|
[+] Show/hide bicluster #108 rows and columns.
bicluster 108
Mycobacterium tuberculosis H37Rv
18x35
[+] Show/hide bicluster #108 rows (genes).
bicluster 108 genes
Mycobacterium tuberculosis H37Rv
18
[+] Show/hide bicluster #108 rows (short gene names).
bicluster 108 short names
Mycobacterium tuberculosis H37Rv
18
short_name
[+] Show/hide bicluster #108 rows (long gene names).
bicluster 108 long names
Mycobacterium tuberculosis H37Rv
18
long_name
[+] Show/hide bicluster #108 rows (NCBI RefSeq gene IDs).
bicluster 108 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
32
[+] Show/hide bicluster #108 gene upstream sequences.
bicluster 108 upstream sequences
Mycobacterium tuberculosis H37Rv
18
upstream
[+] Show/hide bicluster #108 columns (arrays; conditions).
bicluster 108 arrays
Mycobacterium tuberculosis H37Rv
35
[+] Show/hide bicluster #108 ratios.
bicluster 108 ratios
Mycobacterium tuberculosis H37Rv
18x35
GENES BZA Cap CCCP Cerulenin Clofazimine CPZ Deferoxamine DIPED Dipyridyl DTNB DTT GSNO_CFZ GSNO_CPZ GSNO_KCN GSNO_menadione Levo menadione methoxatin Min_med__succinate_ Nam NaN3 Palmitate Procept_6778 PZA Rox starvation Succinate Tet TRZ UV Verapamil X_109 X_111891 X_121940 X5CL_PZA
Rv0049 1.22592421770913 -1.84708907150823 2.63985268748589 -0.235418972667494 0.391918588901776 0.712001582708492 -0.163016651575060 0.215230709933964 -0.385391318891651 -0.0246232606634713 0.0823114991552995 -0.0277217942632481 0.757747247132665 0.653556203406962 -0.103865972431291 0.333899059988489 -0.159790648233944 -0.586585541988935 -0.574254450840335 0.20564635335318 0.164929345679976 -0.251431382309798 0.51340396569573 0.175413145555259 -2.85729446998990 -0.448785800080421 -0.335446735734739 -2.70171390677259 0.555890865364393 0.00333187686106714 -0.108253344567758 -0.341021145156192 -0.457669375258577 -0.228444132777896 0.762974800315465
Rv0490 0.572859151357283 -1.84080142546164 0.657346669349447 -0.198765163560651 0.83851048827939 0.479457677240912 -0.210742552013598 0.243373814035394 -0.475642240164839 -0.309207211291185 1.00925489586988 0.395177566606678 0.783369670175785 1.73279543078939 0.238545469226311 -0.140450339301854 -0.0171223728415109 -0.095139334368425 -0.353869238404328 0.275180435253892 0.872637146950208 -0.41408776233593 0.09150690786761 -0.224634528656278 -2.03222094820277 -0.632203136302462 -0.342880215139769 -4.53350363593065 0.876732302202626 0.289756760292157 -0.468915063338865 -0.533597902017458 -0.0621527612290171 -0.508654853131499 0.0088646548709795
Rv0495c 0.613297259165399 -1.66545588734737 0.865362522510604 0 1.15395192426955 0.346851817032453 -0.084291536467266 -0.842292811258934 -0.131677615600844 -0.186752382303859 1.26576858999880 0.821446180899059 0.424909226829912 2.58586717654887 0.729334961852068 -0.705676101943555 0.459444658306416 -0.419254754796054 -1.31016708353900 0.259444566505153 1.28284887542723 -0.0269331590176226 0.639626669437473 -0.218140868236518 -3.4115959274913 -0.994088862859416 0.307140692559336 -2.57885867494492 0.384241167752586 0.568215760438306 -0.352571774740899 -0.370976612727018 0.0294770490864796 -0.954821146428316 0.498555138371783
Rv0505c 0.70996400342833 -1.92214270026817 1.67723518823144 -0.953699841465695 1.15336762577332 1.85034761797925 -0.269668410911295 -0.255558427981588 -0.347844314097326 -0.380883863256648 1.36232211114432 0.91591278714675 2.09019495256962 1.52087797743309 0.278147423041699 -0.959699129302212 -0.442809403567193 -0.674402185338542 -0.651913367688846 0.555013316816665 0.343194133101396 0.136436181725925 0.114825525978671 0.683269818570433 -2.18638709267546 0.719797993975975 0.327361750381470 -2.07820567073018 0.707915912022876 -0.475349686065688 0.266648060172558 -0.835045597920433 -0.297507587169965 -1.12339342599224 0.426914920289482
Rv0938 0.678452745759667 -1.28400972987210 1.36413096766549 -0.718548638465277 1.30974454016090 1.22141582374259 0.0354028993275551 -0.435105675350701 -0.331217215590038 -0.178985629252323 0.935288198754793 0.590361278177089 1.59634771996835 2.24551791746770 0.183227067418874 -0.356748651553973 -0.279053894817419 -0.238010632120274 -0.521020867754448 0.617901607151176 -0.579358523363323 -0.767198864916733 0.502684521903192 0.280284147394223 -1.31462128643434 -0.216986527744182 -0.850398752661843 -2.09763438051457 1.63226955626225 -0.118989059197334 -0.202282075334903 -0.712568702799249 -0.0845258139074781 -0.386037395350145 0.458133671655755
Rv1594 -0.560685047371422 -2.09025392187933 0.0154207564734958 0.143160377952011 0.54819562081149 0.717431820097577 -0.351471908893606 -0.194918366140868 0.115501719670223 -0.732695416681547 1.0558581686338 0.184540334776819 0.739435669097805 1.14555878329906 -0.626355634500598 -0.445150194930792 -0.373329444275286 -0.751414239856279 -1.69717938391474 -0.130780834571585 0.600477484726665 -0.395888289440138 0.334372864307117 0.131718873594391 -1.90665928157715 -0.440751185633258 -0.984532168837698 -1.53531259513731 1.09784481268383 0 -0.778351138200166 -0.117386681936830 -0.49862567347321 -1.0034908691219 0.422507995639219
Rv1595 0.0199159233593966 -1.73603415131554 -0.385309514204629 -0.0496723555668897 0.704209412651283 0.6114425977681 -0.151807978348493 -0.128679819273230 0.148477615893873 -0.368244166496372 0.594395832559345 0.347540750121593 0.86378692228147 1.17908977990053 -0.864223446929052 -0.515509536946086 -0.691480060958804 -0.432947790943716 -1.62804957793789 0 0.731823067800241 -0.915267805215753 1.15142163012180 0.453127329649402 -1.75065559692627 -0.187423939327084 -0.934598801935822 -2.54754750144136 0.602915767194665 0.0963316258174409 -0.286595058996284 0.2013359000293 -0.386369269837396 -0.841477417977253 0.941992735762155
Rv1916 0.458552091804419 -2.36185822568385 0.0654162614015725 -0.523822184850996 0.851550976805216 1.29771003563133 -0.205713391003482 -0.162685291282557 -0.453356969388547 -0.0896302355020488 1.2088034971844 0.559520514141153 1.5582900816673 1.27077233813587 0.618452567681286 0.157592555707441 0.326748727282330 0.175309012366150 0.203385611221748 0 1.42626770481583 0.218126890979935 0.0755390850407704 -0.111257355421824 -3.19071288349614 -0.470762533382371 0.31980671451208 -3.35110469748270 0.708670578080495 -0.473311368807179 0.0214603925064068 -0.414788543064698 0.127089018686149 -0.477559756584648 0.629051897152586
Rv1925 0.115887568119740 -1.58826081414894 1.33797161840773 0.00475057579264055 0.461853866256431 0.927876825628531 -0.246533213479457 -0.33517088456549 -0.586298586658522 -0.332054680930907 0.580341814236332 0.0354319018655982 1.00556988569742 1.98670165723398 0.793890520393307 -0.490217662056709 0.793439744676933 -0.371041621566662 -1.00171130484999 0.0485159729849301 0.932889335142452 -0.633006419692802 0.277633620167397 0.304696004877922 -2.61671194287750 -0.276703435266353 -0.377619658840247 -3.44400060654057 0.664276607274913 -0.387671385641156 -0.253997131959971 -0.407513194534778 -0.216269561067684 -0.53970880541125 0.847783970306711
Rv2181 -0.0374331768341053 -1.83554028323568 1.10802794196802 0.374462368656142 1.51115701341313 0.701329704211949 -0.123332853218421 -0.567370288487033 -0.507740850639391 -0.107917997455329 0.546202529995537 0.018928949390303 0.849832633548583 0.767990867597577 -0.151294116152385 -0.114659533056258 -0.272598591599132 0.0925049482442475 -0.423065072815053 -0.442875813878346 0.684563260330938 -0.238396956175739 0.226929230711378 -0.461612189892805 -2.00521636296386 -1.53952019977618 0.24089684281539 -1.98271009665989 0.298571935320345 -0.49792938702241 0.110171265006515 0.470695527368035 -0.0990857248518678 -0.639022434955006 -0.208590046335459
Rv2495c 0.435069971811487 -2.02209469695349 1.84187592407810 -0.640411134227669 0.519691126917121 0.663313231528198 -0.365649843345943 -0.168889542100470 -0.523942230828313 -0.0401428036204057 1.07189691362861 0.083838033725377 0.777714935630035 2.13382539178129 -0.151087016848462 -0.9617504163036 0.107347839386036 -0.332165196123340 -1.61392433202337 0.043842742011056 0.569764440193737 -0.367913926275852 0.343493220352591 -0.573999077706916 -2.86356664570509 0.103360112387879 -0.426447273212242 -1.69624763007654 0.77631549322898 -0.200997978521242 0.259732004723963 0.0304360501965792 -0.245956146561348 -0.662718654779681 -0.363941964739823
Rv2496c 2.09871382592989 -1.41273642609683 1.48067619893535 -0.0956961806823967 -0.173352426927275 0.644648676716876 -0.0592358096183865 -0.490325354842470 -0.597292213944444 -0.349218477345375 0.48153537278199 -0.229732941668071 0.517581843412393 1.55238879268335 -0.0690691898690358 -0.958324872240292 0.0486144558423078 -0.597878187480766 -0.428937771865722 1.50398491604409 0.0100927532902046 -0.0622922260189167 0.322097160395472 1.21094182686652 -1.91938981033703 -0.0454367237363721 -0.431533598064295 -2.9266842843439 0.552336657063115 -0.0581150993210942 -0.690304038166499 -0.246371395505458 -0.202388862700721 0 1.76477884864882
Rv2678c 0.0656026296812768 -2.31730440963415 0.527727209784911 -0.10684611621132 1.21910287448165 0.611447269218557 -0.135077257048524 -0.124831707539669 -0.0333361536516801 0.197649646066259 0.637290892944116 0.189753518390743 0.340951517619667 1.69855423303644 -0.128723880728798 -0.312675378406482 0.520436064416098 0.0052756754085072 -1.17366344229424 -0.158964545304510 1.12746824805649 0.0921290681946226 1.22896217167152 -0.0531544417832352 -2.39853014137149 -0.906022962275377 0.0282512341345314 -2.70624202813837 -0.165820317629932 -0.379886400251811 0.0323141488352895 0.243738872603140 0.0675583732688646 -0.109137884354967 0.251132753339535
Rv2753c 1.35844369398295 -1.76510326360086 1.72040267549245 -0.194895936413098 1.53176735007097 0.907518162068812 -0.408645411331549 0.140191195017053 -0.831715094247014 -0.445795306734074 0.185230422269225 0.0268145414378807 0.956415634463424 0.973305316624834 -0.100713280651633 -0.228083235896725 -0.327666261860068 -0.243010485179371 -0.214493753856266 0.68203685828359 0.89918030534183 -0.0728709406819905 0.350604916521477 0.380976615213945 -1.47996563311913 -0.00261209527507359 0.528152854988961 -3.68719253337066 0.724121804121722 -0.584948322257842 -0.197668987707613 0.350757421758177 -0.431079785951378 -0.438734833878576 1.25944988926208
Rv3244c 0.711641722593046 -1.81521713360174 0.374584881946997 -0.0595503303951598 1.43795605733297 0.824933647887785 0.194127704443224 0.149461284803285 0.283671273963993 0.271386684349915 -0.729828802227152 0.729909203082986 1.14166807968677 1.13010923834905 -0.250516440476728 -0.347539661545196 -0.760133009541355 0.520362095568649 -0.483394370832842 0.592266392003732 -0.0661599988573719 -0.297297547742707 0.39107811386028 0.0814477317183394 -2.52686350161976 -0.846553274155993 0.0351249410120538 -2.97516970208535 -0.307546710291969 0.171754764670689 0.26591648939032 -0.165404886408715 0.187874606461424 -0.76042278082786 0.875695026462897
Rv3408 0.950500768036013 -1.26459685076957 0.791327777442012 0.187971119588622 0.915454094299176 0.797870963151871 -0.177978544788250 -0.26939886787764 -0.365562978141235 0.43103023464432 1.02304000759841 0.738850569851951 0.622926638103305 1.20312703793706 0.799805977987626 -0.654404532691324 0.72828544830973 0.182182769376896 -1.00058106104461 0.412016980465299 0.612006981755052 -0.0826159652000282 -0.112919440237998 0.829407533729703 -2.11213688990682 -1.38679847155834 0.360401274640589 -3.22655905149347 -0.106190117961103 -0.0904285694651471 0.623074251120716 -0.562600321464283 0.294625487788624 -0.666837782826077 1.40976525528789
Rv3869 0.187866967007813 -1.60307060228278 0.357398185436672 -0.451577174776909 0.698547266954531 0.954920440676197 -0.184036939756593 0 -0.183261921395773 -0.387800243305155 -0.974839180364269 0.908850896597737 1.20400463216338 1.21008387182024 0.256337128954033 0.01275823326813 0.247323397713647 -0.43457743073072 0.849287287598158 0.195181338267441 0.502182766386466 -0.332824497532855 -0.0451221411545439 -0.067017196675474 -2.10352022826614 -0.266836084866212 -0.413804443154595 -3.82496498402445 0.945576198810202 -0.511164106103191 0.0442975263277819 -0.124495492982722 -0.157210125180444 -0.337789543967506 1.63203213374121
Rv3875 1.196269534023 -1.79596885821717 0.335715510975087 0.331420213119987 0.081434255841552 1.35372594928706 0.107909713307287 -0.756405176939228 -0.365412863713731 -0.453173872379192 1.23500095068642 0.647301828163768 1.63445944891533 0.209327498125775 0.518551453441571 -1.01792806034956 -0.117575545973845 -0.688090181566007 -0.575487698601141 0.730296962649806 0.354448247636535 -0.182026972446129 -0.093299232687195 0.536108022184433 -2.56206256070789 -0.363747805098739 -0.363075523487645 -2.13617309256388 0.997700466605049 -0.0591938090773227 0.2878961017444 -1.03099782575620 0.103738933847391 -0.636552090847584 1.91158481165614
[+] Show/hide bicluster #108 motif PSSM #1. bicluster 108 motif PSSM #1 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0 0.142857 0.857143 0
2 0.142857 0.428571 0 0.428571
3 0 0 1 0
4 0 1 0 0
5 0.142857 0.857143 0 0
6 0 0 1 0
7 0.571429 0 0 0.428571
8 0.142857 0 0 0.857143
9 0.142857 0 0.857143 0
10 0.142857 0 0.142857 0.714286
11 0.142857 0.142857 0 0.714286
12 0 0 1 0
13 0.714286 0.142857 0 0.142857
14 0 0.142857 0.285714 0.571429
15 0 0.714286 0.285714 0 [+] Show/hide bicluster #108 motif PSSM #2. bicluster 108 motif PSSM #2 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 1 0 0 0
2 0 1 0 0
3 0 0 0 1
4 0 0 0 1
5 0 0 1 0
6 1 0 0 0
7 1 0 0 0
8 1 0 0 0 |