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[+] Show/hide bicluster #107 rows and columns.
bicluster 107
Mycobacterium tuberculosis H37Rv
22x37
[+] Show/hide bicluster #107 rows (genes).
bicluster 107 genes
Mycobacterium tuberculosis H37Rv
22
[+] Show/hide bicluster #107 rows (short gene names).
bicluster 107 short names
Mycobacterium tuberculosis H37Rv
22
short_name
[+] Show/hide bicluster #107 rows (long gene names).
bicluster 107 long names
Mycobacterium tuberculosis H37Rv
22
long_name
[+] Show/hide bicluster #107 rows (NCBI RefSeq gene IDs).
bicluster 107 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
44
[+] Show/hide bicluster #107 gene upstream sequences.
bicluster 107 upstream sequences
Mycobacterium tuberculosis H37Rv
22
upstream
[+] Show/hide bicluster #107 columns (arrays; conditions).
bicluster 107 arrays
Mycobacterium tuberculosis H37Rv
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[+] Show/hide bicluster #107 ratios.
bicluster 107 ratios
Mycobacterium tuberculosis H37Rv
22x37
GENES Amikacin Amp ARP4 Cephalexin Clofazimine Clotrimazole DIPED Dipyridyl DTT EMB Eta GSNO_CPZ GSNO_menadione INH menadione Min_med__succinate_ NRP_1 Oflox Palmitate pH4_8 pH5_2 pH5_6 PZA SM starvation Succinate TLM TRZ Valinomycin Verapamil X_109 X_111895 X_124196 X_241 X_59 X5CL_PZA ZnSO4
Rv0063 -0.124092547128374 0.954886511201976 -1.64781971344529 0.694630814063736 -1.15952902299830 0.636916667770943 0 -0.033875911259394 0.0616236686130738 0.161231698965571 1.15782816148275 -0.569391603745938 -1.36124020513396 0.668794881273259 -1.42644072780598 -1.64773052996875 -1.48578611778105 -0.0516895130779103 0.0413990188325466 -0.465898324643412 -0.489936816631391 -0.576189149408286 -0.694046502355047 -0.496450772690843 1.31543634021648 0.584729525848023 0.686743193970931 -0.617138552264415 -0.586544318094744 0.621912790919654 0.837451215164522 0.149408793079634 -0.029749464904074 0.70801580846715 1.29648383592115 -0.827865928171722 2.16861859007388
Rv0208c -0.456920887478431 1.53266753470063 -0.701126655461722 0.949467801340393 0.639256258319998 0.498480137172936 0.388627445976452 0.0151364524566209 -0.595982774075424 0.905794280540039 1.71735420716575 0.101325093856680 -0.402521201408233 1.57764109140167 -0.56993431038591 1.07781367349293 -1.83552187009447 -0.362661223506523 0.321863337958194 0.802920433982435 1.15154105011849 0.801438245392829 -0.716298476810169 -0.635795081257089 1.83643672203441 0.131993848025051 1.95037796649763 -0.377463535731109 -1.58012065139563 0.445919959421606 1.12039227593274 -0.229165048780899 0.111024031484905 1.27505548939986 1.46628361472894 -1.26795892108026 1.34261376833237
Rv0309 0.124518520446375 0.7870064828253 -1.08905614751983 0 -0.373140865399611 0.259076526333524 0.613352725624082 -0.462105586251256 -0.465342197211235 1.70588387155621 2.51471652903888 -1.47757520004327 -0.23152521543355 2.56591773628165 -0.329091373222439 -0.0245840152279377 -1.24477039415420 -0.330172212522411 0.955471794426184 1.29002094705395 1.30483875259994 1.44752812369292 -0.696892232031364 0.8924383601763 1.24379982390542 1.08384751179619 1.15824954416701 -0.546883846476552 -1.22592251103068 0.878230768865747 0.811484534761515 -0.376280090820404 -0.247419014257795 0.249886542291441 0.861472186627815 -1.21330050774578 2.12645513477384
Rv0312 -1.1442862328963 1.51002779641853 -1.64462538235959 0.868384589360423 -1.00103079285761 0.922359824240056 0.674767537066084 -0.202684695893335 -0.892442618687189 0.999301574793964 2.01024005086299 -0.851812778688772 -1.44394609682663 1.53162153778470 -1.16303096910935 -1.98683468070688 -1.60638697787765 -0.472095428067144 1.65732003265822 1.35847950868902 0.809270125386466 0.800147922792656 0.187718916794284 -0.712447114106371 1.70316417435052 1.71474729126092 1.24612894795015 -1.20690252807215 -1.18426993324599 0.68374205027517 0.838416033833745 -0.667076995330573 -0.266873360620348 0.773721048510126 0.684760591962727 0 2.07850160707573
Rv0888 -0.917704560544402 1.20688057269343 -1.44651897118978 0.824593808819674 -1.16426712005799 0.802017840370697 0.599194251432242 -0.337937582866081 -1.01355833581092 0.81161519201169 1.88369690828532 -1.27967734619196 -1.18785512565739 1.34174625898093 -1.17631510678369 -0.0998534798978724 -0.988518878690858 -0.982738911502635 1.25820040532747 0.773420034097542 1.38996229359447 1.10833882436195 -0.142418616200291 -0.523382689058775 0.713635233627692 1.09972943237163 1.20847632890009 -0.963807555618774 -1.59164536261587 0.81100354591483 0.831817604008076 -0.4823157756882 0.0254120824665399 0.59781605555137 0.719681813686653 -0.399569646283932 1.30887114103946
Rv1433 -0.276926234941341 0.172078098235011 -0.186666646881512 0.716046278944856 -0.649812934301554 0.254405558194312 -0.118508373345262 -0.793961068276845 0.297267851428563 -0.181890701268148 0.606571683547234 -0.523580936242423 -0.506392943535419 0.331613834230406 -0.47270330347107 -1.67842674647551 -0.188600041632737 -0.363897588157395 0.978915758126222 0.353881392718786 0.356225840512313 0.137136353814326 -1.02085129553793 -0.591528318124376 0.792072493771687 0.933347866781339 0.0982640914677162 0.556529710491039 -1.53492746967013 0.360892817180316 0.250626453895732 -1.07992812740225 -0.662913249215607 0.0199066426579161 0.80296972495189 -0.784692128540247 0.255295973391244
Rv1435c 0.584113918467996 0.824006009616842 -1.32164173359514 0.775420284925332 -1.01210090320357 -0.049612876114627 -0.323389843271156 -1.02264413416351 0.086640065405956 0.702789228030387 2.15773278633379 -0.74631782566841 -1.28566446179946 2.56510781814751 -1.00584751876685 -2.38496428937460 -2.20063506521869 -1.27258280514971 0.238294094994688 1.78208624107504 0.306953602564615 0.0664441275059699 -0.143430805822708 -0.678028597962791 1.5390687302635 0.195644771961514 0.951510055785947 -0.515253204878907 -0.120832904473425 0.356206816253266 1.14218510617151 -1.30478397588427 -0.280582698101817 0.691831462778069 1.23499934214782 -0.0453750558421008 0.99551907731123
Rv1469 0.478093954540588 0.834133263794897 0 0.447518155936504 -2.10482407855667 -0.167191876650744 0.0541968622274234 0.085820617658598 -1.66045402044788 1.06655067498555 1.93629250871815 -0.146973888142333 -0.63824048027247 1.57639529248798 -1.14301316519880 -1.37190582199406 -1.51972136421453 -0.114891798864630 1.35643758456395 1.13886113853379 1.44758794523225 1.31594668736944 -0.341657676489031 -0.0951491289506674 1.26484947805056 0.663369136921841 0.94491022957797 -0.343294244795128 -2.17771641455782 -0.159541082584354 0.7145067568466 -0.760349134325254 -0.784442803505105 0.640533276404983 0.37644094593837 -1.62709181295130 0.0878330818455328
Rv1477 -0.571203695540141 1.13892794317892 -0.197078232864126 0.95982544813201 0.320178410292989 0.816897962954788 0.192491163868683 -0.502098102602345 -0.429820333540173 0.961890221267321 1.37145276073144 -0.92320335746946 -1.21831270751499 1.56636961472223 -1.09736366788127 -1.11878655680532 -2.57078669007712 -0.0327616588801234 0.409058884446538 0.826164437000633 0.96430364452223 0.870879329295729 0.461170728471772 -0.0328300896388715 2.21640465713333 1.15409339655389 0.969536066562419 0.355900929872384 -2.16881449618948 0.0765873382322677 1.07719816673206 -1.93278889341039 -0.590716461344112 1.07438936220016 1.30676310197732 0.365963092934803 0.477737293437761
Rv1690 -0.194711190864795 0.846829868809704 0.547346567123014 0.72897527362917 -1.08522720458223 0.471829465841917 0.338524655865541 -0.556759714163911 -0.77376283373198 0.847361541346838 2.48247188488087 -0.581543563565552 -0.61518552558093 2.51582373895018 -0.499219494356525 -1.65451420850377 -1.93964985529881 -0.417811320581841 0.589226587419875 1.71555546028579 1.35748054268671 0.783977108439777 0.0247453628288151 -0.94391972140828 0.680608796482942 0.338471427959329 1.33940094812955 -0.485019300850891 -0.789443264267665 0.357632919993961 1.14040370256998 -0.803061728772195 -0.149767804029673 1.14897257431209 1.19177717253383 -0.560733138333574 1.35662560621643
Rv1987 -0.829125291275344 1.14398754845719 -1.57327354198784 0.400980521840963 -0.553685199802405 0.25703804334196 0.194081272047472 -0.818177363291534 -0.132373663962622 0.824659697905993 2.05505359081213 0.147201947156760 -0.866467137065354 1.96023233668330 -0.757112851697967 -2.30134657851757 -1.40008822847941 -1.58629522861368 0.748027332412111 1.33912404685529 0.684056274228811 1.12832164413859 -0.970664961061057 -0.691253130903631 1.62592814768689 0.723949363724917 1.40907265060744 -0.140520589345355 -1.44636868853645 0.520431219922763 0.546645741126186 -1.23235537347263 -0.0754873450809095 0.564714957178305 0.785888976402468 -0.828567882132102 1.16737352202454
Rv2152c -2.09724487154684 0.14441679597374 -1.15942237781393 0.725509694574417 0.604618709169796 0.388374588420613 -0.0393038732344703 0.32332258136991 -0.598881334726154 0.56855431419594 0.336402756004446 -0.0269372027645119 -1.28380666717577 0.671912447692155 -1.21404452936946 -1.24183494436084 -2.44736075516013 -0.330525650376091 0.0302590783576526 0.367384024035741 -0.132952116289483 -0.000416194942070892 -0.0588141759356734 -0.178901591720363 0 0.306638476628445 -0.192935744847162 -0.757592538771492 -1.56539546146072 0.143759747009598 0.463775444629743 -0.485400848291152 0.228063845107965 0.562449811790748 0.528088141684326 -0.670651230725814 0.642666212626185
Rv2154c -2.01416174981830 0.31722784297377 -1.15204932028052 0.940895201331154 -0.39727560349491 0.381980751789017 -0.339020094227112 -0.304855381967616 -0.220451359574129 0.272077099466180 0.393307144825694 -0.657080078532327 -1.11600644891227 0.092551960680148 -1.01366979222848 -0.17580769985468 -1.78934942121981 -0.91294415013756 0.78864049709268 0.239773300942805 0.314557721360308 0.374664008820637 0.0287580080615241 -0.511756245366257 1.14388227623778 0.991179163941228 0.362178941696062 -0.86440976413401 -0.750118256154281 0.309653100283422 0.181595808846093 -1.32452978053721 -0.34186631722787 0.00420660739058812 0.63326257457993 0.117282358607977 0.558329056159002
Rv2155c 0.592469409613102 1.40879893469002 -1.60509144160427 1.20587342934594 -0.948913330904566 0.226268354349897 0.0521638084796243 -0.0986233028112074 -0.376482477147948 0.25430758072354 1.51423242399092 -1.31463852229908 -1.80977185153632 1.62039129266392 -1.84379773593873 -1.10856284390679 -2.20687513872197 -1.84713482712815 0.847660766191702 2.06735122724091 0.822814221151813 0.192109861272140 0 -1.3859931315669 0.739628918119518 0.661187975442786 0.481021439548167 -0.602678835430136 -1.82619172491920 0.0443366785545021 0.685976799245887 -1.64721364512527 -0.309856026991015 0.109821954341869 0.34040535414911 -0.0804701354455177 0.371968781211251
Rv2457c -1.71540956486243 0.675238989660103 -1.56868217365317 0.608765282025106 0.248968071874809 0.461987148778710 0.192816524006864 0.176592405705600 -0.767167792428186 0.948631703609258 1.48494892715527 0.283515824439321 -0.475135515625583 1.88430213088779 -0.83512703266676 0.0379207685808667 -1.41194678364001 -0.69511441784711 -0.185515114812965 0.56482845395267 0.493766112854143 0.363570361109474 -1.05219206085787 -0.341544369407565 0.710352170395716 0.244597794907529 0.599440079990305 -1.10188689784465 -3.0571657863602 0 0.286330698721197 0.123688514754821 0.0947802505054126 0.482853835565161 0.544490555265644 -0.616775276506621 0.694840844541172
Rv2721c -0.326466912540996 1.28502966007814 -1.12512583024708 1.26983514727322 -1.13565237371153 0.575335280893998 0.66827198137926 -0.270541691624139 -0.812171207173386 1.14369993402076 2.27606477061385 -1.49675017774974 -1.02159784641903 2.44318476627106 -1.30879866061407 -1.77451948565631 -2.12242666163977 -0.78469809493622 1.01953693338952 1.00577965269176 0.761096664383063 0.63303695533216 0.265988332259108 -0.588372592741662 1.13263479087235 1.20047462989759 1.35946653981300 -1.37352603437527 -1.64661997318831 0.113711035565299 1.24164553602119 -0.721105646083504 -0.050005336121958 0.716978381387174 1.36067327384009 0.457014684515317 0.747717973454718
Rv3096 -1.15414940429101 0.94976030243106 -0.848578359933356 0.819875914971368 -0.958514880445631 0.350045322630588 0.857941439910162 0.0334324264408266 -0.473260110824959 1.99517548221886 2.21592636189641 -0.99769282972166 -0.899936451023059 1.93634425477912 -1.58431014242384 -1.00876322777444 -1.86527195591416 -0.294611660759729 -0.26107599316434 1.09515310307606 0.991275809524728 0.837363799569617 0.273793682690651 -0.162696313050188 1.14565223335104 0.0800862928401349 1.92748068851369 0.205673117718934 -2.24967375296472 -0.614268579610163 1.12239904630721 -0.512815717063271 0.0236717923764795 1.43435631577736 1.18950009544551 -0.12431530641842 -0.298085040746387
Rv3209 -1.02375770688772 0.861309619801138 -1.56186652922281 0.717102582611292 0.160985287089494 0.250387002652546 -0.439671905448233 -0.569026162326637 -0.171576529169488 0.0896484706562036 1.03272399347320 0.462292026654392 -0.468616632531099 0.978713384768253 -1.06328576397132 -2.05805724215129 -1.30689641618384 -0.176387056507322 0.366167039997165 0.469547876283636 0.321264471377203 0.257001261628728 -0.409569181588568 -0.678098186543924 0.586866138444505 0.548129023041795 0.630601542251486 -0.351527774609464 -1.38332535942726 0.517088377962731 0.399757908979028 -1.04725738438842 -0.447040307016816 0.460349364611128 1.03425320752873 0.084777580995115 1.45879543348282
Rv3310 -0.765119437534001 1.70743090626836 -2.21206536899763 1.28595231834857 -0.948539448929434 0.328962460883265 0.253554402611493 -0.105789510109456 -0.237921987436947 0.58962540377868 1.64567141988752 -0.523433142572512 -1.65392978176457 1.73699584968929 -1.02581122721574 -2.20123081426241 -2.83702516940389 -0.616374629057594 1.25332966524095 1.40047716743773 0.871854151984228 0.91249940484919 -0.620979772376349 -0.103798120180560 0.98477793501581 1.34388589034787 1.15076632679961 0.510173628125143 -1.95646984715756 0.420295586370832 0.334895454836907 -1.00374384878931 -0.0639227560658967 0.294529028279121 0.55100142153966 -0.299619719098009 1.13624668625569
Rv3413c -0.846085460769796 0.795713848732974 -1.06728544711945 0.510786819194215 -0.257353040815370 0.384226667766613 -0.286701691244707 -0.901197762066043 -0.557192089948526 0.801363758339528 2.09363936977272 -0.978930663334633 -1.06039372722749 1.88772462875293 -1.30410154102292 -2.97920728802481 -1.70130259293014 -0.354678672847344 0.435155126404201 0.281085713640803 0.443207151630744 0.542002955712443 -0.50989061860427 0.234286900895794 0.357636363111006 0.926353275018482 1.37714938499523 -0.43517742892835 -2.18473981481859 0.164892067297627 1.01396307977883 -1.31276476628286 -0.288123864169413 0.983792915976535 1.19192916456928 0.0977288424303757 0.88303529830058
Rv3675 -0.0464303639375419 -0.0437277291885004 0.156551260952911 1.10805359395339 -1.48892170990395 -0.194450641021525 -0.427165417624222 0.0224914033771568 -1.73082358140545 0.415585562389283 1.86266679982583 -0.76080763446631 -0.236830556186504 1.71799442481529 -0.311340901906268 -1.26698997791359 -1.32824795609011 -0.243088573973013 0.417600621023528 0.650878582892018 0.182901897105232 0 0.089224953521522 -0.646912382552826 0.50252555608672 0.667082611797432 0.743692836053415 -0.0132881902241669 -2.00207453985695 -0.378707481901417 0.931323402761865 -0.335354884580846 -0.405798111919056 0.732212860042135 1.69181391829715 -0.607834675636376 1.03317303951446
Rv3717 -0.927341813414965 1.1319137064567 -1.36248544822959 0.944372360784763 -0.378526193520778 0.0975946109337433 0.289065647464395 -0.214698259589792 -0.301283757533463 1.34094313877250 1.90825051436442 -0.902571028533171 -1.04718954695840 1.39759576843778 -1.48199200642799 -1.53164244171142 -2.05161027834397 -1.28178100429764 0.400052503516787 0.395911721590551 -0.0486612893793805 0.275773158572201 -0.328849496407781 -1.03251391727456 1.88216768773749 0.7164639657975 1.06814869520459 -0.146830366684996 -1.45054039463701 1.06556626709664 0.786791184076201 -1.05506697756474 -0.48684317268387 0.614014390847539 1.10368727077268 0.417577463387118 1.27973404251542
[+] Show/hide bicluster #107 motif PSSM #1. bicluster 107 motif PSSM #1 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 0.058824 0.764706 0 0.176471
2 0.705882 0.294118 0 0
3 0.647059 0.117647 0.235294 0
4 0 0.647059 0.235294 0.117647
5 0.235294 0.647059 0.058824 0.058824
6 0.176471 0.411765 0 0.411765
7 0.176471 0 0.764706 0.058824
8 0.764706 0.058824 0.176471 0
9 0.764706 0 0.235294 0
10 0.176471 0.823529 0 0
11 0 0.823529 0.176471 0
12 0.176471 0 0.823529 0
13 0.058824 0.647059 0.294118 0
14 0.294118 0 0.705882 0
15 0.176471 0.058824 0.352941 0.411765
16 0.117647 0.294118 0.294118 0.294118
17 0.058824 0.117647 0.411765 0.411765
18 0.176471 0.411765 0.411765 0
19 0.058824 0.235294 0.529412 0.176471
20 0.058824 0.058824 0.764706 0.117647
21 0.235294 0.411765 0.058824 0.294118
22 0.588235 0.352941 0.058824 0
23 0 0.470588 0.411765 0.117647 [+] Show/hide bicluster #107 motif PSSM #2. bicluster 107 motif PSSM #2 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0.6 0.2 0.2 0
4 0.8 0 0 0.2
5 0.2 0 0.2 0.6
6 0.2 0.2 0 0.6
7 0 0.6 0.4 0
8 0 0.8 0 0.2
9 0.8 0 0.2 0
10 0.8 0 0 0.2
11 0 0.6 0 0.4
12 0 1 0 0
13 0 0 0.4 0.6
14 0.4 0.4 0 0.2
15 0.4 0 0.6 0
16 1 0 0 0
17 0.4 0.2 0.2 0.2
18 0.2 0 0 0.8
19 0.2 0 0 0.8
20 0 0 0.4 0.6
21 0.2 0 0 0.8 |