|
[+] Show/hide bicluster #98 rows and columns.
bicluster 98
Mycobacterium tuberculosis H37Rv
25x37
[+] Show/hide bicluster #98 rows (genes).
bicluster 98 genes
Mycobacterium tuberculosis H37Rv
25
[+] Show/hide bicluster #98 rows (short gene names).
bicluster 98 short names
Mycobacterium tuberculosis H37Rv
25
short_name
[+] Show/hide bicluster #98 rows (long gene names).
bicluster 98 long names
Mycobacterium tuberculosis H37Rv
25
long_name
[+] Show/hide bicluster #98 rows (NCBI RefSeq gene IDs).
bicluster 98 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
38
[+] Show/hide bicluster #98 gene upstream sequences.
bicluster 98 upstream sequences
Mycobacterium tuberculosis H37Rv
22
upstream
[+] Show/hide bicluster #98 columns (arrays; conditions).
bicluster 98 arrays
Mycobacterium tuberculosis H37Rv
37
[+] Show/hide bicluster #98 ratios.
bicluster 98 ratios
Mycobacterium tuberculosis H37Rv
25x37
GENES Amp Antimycin BZA Cephalexin Cerulenin DCCD Deferoxamine DIPED DTNB Econazole EMB Eta GSNO INH methoxatin Min_med__succinate_ Nam Novobiocin NRP_1 PA824 Palmitate pH4_8 pH5_2 pH5_6 PZA Rif Rifp Rox Succinate Tet TRC TRZ X_109 X_111891 X_124196 X_59 X5CL_PZA
ORF07004 -0.891445384464645 -1.05806141086034 0.802376166664853 -0.700424901752133 -0.742179246824238 2.41905543203197 -0.617453492687003 -1.38852602868166 -0.614242653487628 -1.02481345486052 -0.754087729249142 -1.6228719029 -0.0256687071507418 -1.54517030541630 -0.207735571501632 -0.0260501691197173 0.796813572809216 0.272977214888444 -0.429698507359569 1.08583133526332 -0.398640178952539 1.02146351032529 0.490093737512946 0.928083162085184 0.728778649109819 -0.289239111760772 -1.03124278337935 0.541765312190761 -0.143830113789939 1.15416734056972 0.428411601994583 0.196722169242052 -0.127382156466112 -0.66315022343278 0.236074034734354 -0.516758440572013 0.539784428357685
ORFD0070 0.481923054573540 -0.511409913151661 1.19091008216420 -0.522479846895916 -0.454495472466154 2.33004806097484 -0.419825011342126 -0.626333926282494 -0.90093452500634 -0.597040334911587 -0.478731211926696 -0.971290189180591 -0.88458449864375 -0.593906460300997 -0.773311089690677 -1.71275454004005 1.11672212313697 0.607288091129021 0.410341673725339 2.38712418334681 -0.167265679136160 0.479744311905696 0.334407182767733 0.0719278119088117 0.545216926585552 -0.531846991073942 -0.625755499343091 0.839868027985103 0.0492992541638868 0.391129005848345 1.89699484497369 0.326841557809693 -0.521563069948749 -0.617651362724128 -0.634525822318721 -0.234027876915275 0.293190552868686
Rv0140 -0.231918693903757 -0.261217853973905 1.77327434591204 -0.116509501771916 -0.0972955203105512 1.24305986627678 -0.0965996785803642 -0.0437737350797276 0.0855197911570003 -0.384896657546468 -0.521310387814566 -0.425151958111677 0.00726678157444528 -0.249932127161450 -0.0927383145466228 -0.970724481518583 1.71818902308086 -0.169358913450165 0.538264501183416 0.442160558665147 -0.424519945436598 1.34711574559071 1.16975854550403 0.649781779486 1.66863724932557 -0.374053607882585 0.134898863584896 1.08637365795087 -0.530271801639313 1.0319682290898 2.51328747552195 0.332659987201819 -0.395369080093253 -0.0384564838129932 -0.316402611626771 -0.47744465361195 1.09544814088404
Rv0384c -0.0489271962439607 -0.208975338447713 1.96486535375961 0 0.301434977617936 2.22219730108794 -0.161525785374087 0.154476434304041 -0.139710465002119 -0.294535494133807 0.176977681035142 -0.237240464660499 -0.151859428891469 -0.267519659629163 -0.0349266056127601 -0.88089527983711 1.91147556697603 0.175855604665161 0.128412649136435 0.332343235419558 -0.404559963162457 0.72665772539752 0.518006803895037 0.311671974772258 3.26299505167283 -0.431682022201578 -0.212471344235872 -0.0380453024027708 -0.355211312247173 -0.512637801056548 1.07504601231894 0.503358842814943 -0.204600838713443 -0.272199989458431 -0.349220054815596 -0.178879220907655 2.19273266302676
Rv0560c -0.251579327284215 0.719178746827636 1.24436576761425 -0.0709116670187161 -0.185631724462631 0.990747676613635 -0.169849190996202 -0.0078391426611886 0.142118951022908 -0.356612115402762 -0.40725449028638 -0.440983233176079 -0.0943729938150395 -0.175272073101715 -0.384260385042889 -0.265808583488704 1.47488378214216 0.479347563357238 -0.136955723832806 -0.191120226980657 -0.69513492477677 0.670822513221159 0.473160061960078 0.0639267072895682 0.203428917344416 0.0840985272906645 0.023575132942519 0.126493380374167 -0.956661548162035 -0.109947634520599 0.309646385675207 1.39003557459888 -0.163556688785936 0.0454265821617006 0.0475053636114113 -0.19541502819485 1.37130701491005
Rv0676c -0.406786279636084 -0.303616217002304 0.690057243750943 -0.729809179167349 -0.667754928328558 2.00943252715509 -0.254864267501704 -0.962029273548847 -0.410735414108185 0.567234467142312 -0.76906294645232 -0.835698576271181 -0.0797521796034226 -0.937531464158716 0.404828594185854 -1.97496412463027 0.56374252458539 -0.666916136050192 -0.743153736042446 1.25316562829044 -1.17114751952163 0.55463693082472 0.489494357512829 0.236252776529749 0.64908361181295 -1.29477965956830 -0.804325318146605 -0.890073721645312 -0.816984326602929 -1.59777867915082 1.92971256164943 1.3073814145183 -0.811702124383428 -0.342254232522153 -0.66309956643616 -0.577368972956364 1.01956240743846
Rv0677c -0.387188199303096 -0.386706493823365 1.14573830221294 -0.411272508324423 -0.744002671220016 3.64952190422549 -0.55045942176775 0.430162243119215 -0.65436624510784 -0.380127603791720 0.288612443006270 -0.369785217574156 -0.441141912251866 -0.187413148741272 0.363531738851442 -1.34992635774992 1.09779143607831 -0.367980084139256 -0.00255888753669643 1.48616028762367 -1.01587074639846 0.652605870180033 0.260200904687318 0.245361599540164 0.597297300259196 0.900485092974854 0.103036156381536 0.829943176663426 -1.13037078540736 -0.300500912553867 1.74312751344979 1.35716047703653 0 -0.418679080196628 -0.194463752446222 -0.433651291128839 1.15502504670191
Rv0678 -0.514134557014278 -0.331449108542798 1.74458240361393 -0.659997518096011 -0.682732254094571 2.53495505887822 -0.603783631547239 -0.609679930952429 -0.554834461856623 0.0515876288630031 -0.729422618454157 -1.13489143719216 -0.936210903874607 -0.95019834922769 -0.14066679541565 -1.66900913641183 1.67168509812849 -0.52279719826899 -0.632334195875332 1.21929082343103 -1.10344922488483 1.26443548317602 0.372969125661513 0.109117176822768 1.48181874941483 -0.441318710621982 -0.346108232490764 0.523505464800005 -1.24149076999521 -0.135314902068117 2.72550216607947 1.71714388124462 -0.579143068790372 -0.394330062460228 -0.739770467337775 -0.65475992068092 1.27762939885712
Rv0747 -0.327856654417844 -0.212490350881744 1.39431415462978 -0.362269085966889 -0.489455865381648 3.45448982546784 -0.266162842296841 -0.267415878250311 -0.644845922020161 -0.418232335492036 -0.244010710143825 -0.195386193286013 -0.443244864139761 -0.26679684258525 -0.17008760830952 -2.06820485843562 1.28733141427304 -0.193894531826858 0.0902250223967316 1.99166071440199 -0.407986447990693 0.653077566544547 0.632885590761983 0.256638046514599 0.777472343083925 0.479189188251292 0.0683745252489538 0.549007246155518 -0.120935921533492 0.900335824115929 1.59044364009877 1.35894309372861 -0.0947937178675386 -0.490848593108786 -0.387583349483163 0 0.452304528492
Rv0841c -0.278063347812353 -0.000694096474126467 1.27545647144589 -0.274201121035937 -0.201769781806343 0.770823980048958 -0.484267022632361 0.0814453790448604 -0.939660795896872 0.318431649488375 -0.120744708870740 -0.198852220696985 -0.745392371284227 -0.295606183898509 -1.20732018227456 0.0527199817614558 0.872364588995283 0.623249465625983 0.731453605701828 0.614873800405274 -0.386691169252016 0.36597644131378 -0.493954056337713 0.359095860552627 1.19048759825330 0.645041892065012 0.0747890861221886 0.492423098330308 -0.750795701146493 1.16674438332360 0.0131592362969246 -0.050170145944865 -0.227621008591955 -0.252498246281131 0.173941745924896 -0.133435117963335 1.53881295872914
Rv0859 -0.583737077773976 -0.155626816043345 0.94595290060072 -0.504558670294894 -0.417594091878941 1.73589740618752 -0.472102231250223 0.296760607959770 0 -0.370756901348657 -0.0876591779507919 0.130278727228251 -0.771114261369302 -0.00508277321367675 0.816930168341793 0.308101959046132 0.338184380796015 -0.342756558185469 -0.99008130537142 0.401575756904401 -0.98633492393501 0.719898842467933 0.497126190406091 0.455120845049155 -0.0227307552451637 -0.969130030907612 -1.35471709897390 -0.0574475567221976 -1.21220178540252 0.0739460344920667 1.26934745094710 0.381785724839088 -0.115595535496183 -0.77247954132927 -0.535885436012061 0.123431506976757 0.65849107422447
Rv1460 -0.16070382033198 -0.3645537706084 0.971582204408421 -0.21867572203196 0.125098085881317 3.08175977587792 0.0902293981816461 -0.400600491044056 -0.556477515285787 -0.236789223944325 -0.302529357992007 -0.201716903861037 0.0106194557144053 -0.400357742227229 -0.0157321107698676 -0.176424451132814 0.815541360481619 -0.257208797010934 0.294339825692741 1.36608140752908 -0.52717423001686 -0.165598690093472 -0.175094432980060 0.0606040189988559 1.85940830494257 -0.762349467186785 -0.212378483067638 1.76403212461322 -0.7209939130511 1.32622302343826 2.40396907531676 1.22745723509427 -0.622160711422792 -0.547986677245902 -0.483843335246074 -0.325127816623717 0.964817726555998
Rv1465 -0.245898663769486 -0.404487053615544 1.26315693539094 0.651575739376126 -0.204144201207294 1.41319771234385 0.455561979865078 0.618632383679751 -1.62146140040481 0.099701139485792 0.0761824231806627 0.0262438212353661 -0.639133781723565 0.0894200908014641 -0.214840770315408 -0.558514305565498 0.61310044309106 0.278967079677211 -2.56963406455375 -0.225443382619282 -0.749915801376426 -0.174656851610707 0.122838669280645 -0.0313610216343917 0.713819599066266 0.731852291801525 -0.246883254210401 -1.81427939560917 0.338355500421059 -0.986536781888063 2.17437180925308 0.510973721884731 -0.0229663490776965 -0.151406305866711 0 -0.157245651474599 0.328729870071357
Rv1907c -0.0297888479384585 -0.249015126676249 0.954875139792576 -0.574279783552746 -0.577111059552934 1.49394969578031 -0.505967245825267 -0.551406983516881 -0.240408799002945 -0.944257336342913 -0.383109664608266 0.0913211142650895 -0.41347827523178 0.264366847435916 -0.00181805882947026 -0.597006007653751 0.973443635230981 -0.0229776069301105 0.846940401741193 -0.394387296341390 -1.33811382289016 1.43263197442166 0.352785612321135 -0.158259166202887 1.71986452921169 -0.663023476583674 -0.276114284514244 -0.133753094431823 -1.55496985917439 -0.687491505684026 0.0579497707727924 -1.19489808582909 -0.371299043114217 -0.497220554372313 -0.114772647589308 -0.325143258461643 0.651582575840252
Rv1908c -0.0348414340647576 -0.00891759078548176 1.01418842383804 0.0924247411647766 -0.226303379655265 2.28120902554958 -0.5166909070874 -0.106216892732369 -0.00970729596053037 -0.386203639273960 -0.116372772919743 -0.138005173527568 -0.169784957266050 -0.157604958002471 0.186453435619277 -0.625985521656807 0.761728654723368 0.719106827839741 1.03749929308832 0.0285093404541835 -0.0978312621189992 0.081804770950903 0.417437076123544 0.278086244833418 1.32409195639844 -0.207977552857201 -0.610090011592894 -0.719416956172226 -0.339759794135324 -0.770988975316655 0.735500552838901 -0.130702187726457 -0.0150871629994627 0 0.394176554212351 -0.143091387146152 0.294955333266432
Rv1909c -0.127876078342383 -0.450452207419042 0.385047148302347 -0.313354616909485 -0.328673393033791 2.71714604476789 -0.565138526162142 -0.180753442840456 -0.289755471239374 -0.182620090302843 -0.469382162255017 -0.238499636007308 -0.131789258426893 -0.543010517792566 -0.117632374598628 0.0562042139360867 0.249187382245001 0.340714600035871 0.88416522356604 0.00154870025801591 -0.0462795754355006 -0.130043575676382 0.201153163017383 -0.207506315152037 0.811159371560563 -0.431340232717207 -0.213522942529180 2.31053730367635 -0.451013066267868 1.48223019116073 1.14586797936653 0.981597351462807 -0.460908631822927 -0.192314777945014 -0.0329158053011204 -0.568746381267278 0
Rv1993c -0.122173952643575 -0.383465695293576 0.507593116340766 -0.270861891182993 -0.638128438046917 2.26316251762691 -0.60073208708084 0.31045859327902 -1.01096057776549 -0.468348842451284 0 0.241521500251579 -0.96218731286498 0.257564964863264 -1.04443803570487 -0.0958220872441931 0.803675431660412 0.274921588780543 -1.18363858205106 1.18990034470023 -0.782267449076536 0.565352033454251 -0.305959620233718 -0.546427289339805 1.83332655138267 0.0197539946885075 -0.135153361045407 0.623711554185357 -1.21729500550633 1.91241545872929 0.830023049030288 0.89268349347516 0.200052386657017 -0.656425833342237 -0.131026336860599 -0.0546517710408564 1.59384110425943
Rv3054c -0.0884906705026856 -0.568396517746788 0.837590089714655 -0.284431398752538 0 0.805901545914617 -0.247839501646041 -0.133389714689201 -0.258696885285823 -0.208824436351834 -0.0278324997076170 -0.114268942181005 -0.404725242473694 -0.141755082658309 -0.406182268772677 -0.223182053023965 0.740366457508924 0.208534631620561 -0.0389367986786984 0.216838907184719 -0.41752702771122 0.543882917005264 0.342248311453184 0.276605485734228 1.34164230597119 0.0358802633087780 -0.346225439160119 1.32048115737397 -1.01996221187434 1.16675554485789 2.73618481102223 -0.126748355096431 -0.366212797553304 -0.119998242241313 -0.100724318328017 -0.905257461401035 0.606249414360285
Rv3206c -0.134767761138473 -0.346685542234227 1.17288784901660 -0.00488179685692982 -0.409699960303066 3.23102782741078 -0.326943350979871 -0.674982734728907 -0.150211009552401 0.048337484049768 -0.436426757426825 -0.0783851415167264 -0.217567169777762 -0.254948943210203 -0.385994969758697 -0.957156056829523 1.13981648179375 0.00669361007490646 0 0.938263592272824 -0.643897152238314 0.767931742559813 0.781431866142611 0.249992217829862 1.88846951655714 -0.781348407368153 -0.446217328478403 -0.298199813596088 -0.531998419203151 -0.206635914059798 2.19217270056349 1.47898854475518 -0.198455838843149 -0.432339927443624 -0.39768854547042 0.0611564779479223 0.89603074191073
Rv3222c -0.114527849341926 -0.0901069989209065 0.990656233742794 0.120177149312995 -0.207964091924461 0.748529075699874 0 -0.0228038947864275 0.0965219090129286 -0.247271658021605 -0.227914720216986 -0.207782286668337 -0.132071937487060 0.323968763145688 -0.102893790086828 -0.374639201098955 1.03087955225109 -0.36917859493375 0.686053484123621 1.05906437560748 -0.296644167877669 0.532111804821028 0.703423182327366 0.238706721483768 1.82945599839100 -0.920313606694078 -1.25786411522916 0.178099329398878 -0.564229632317781 -0.363102554958032 0.70411130422009 -0.528316944800674 -0.408384974962441 -0.00760215059716956 -0.0380422699939703 -0.169633366516514 0.809213690435642
Rv3223c 0.110382637923226 -0.543095559066843 1.67162895785592 -0.517066675075539 0 1.05349274404148 -0.155490621164394 -0.351387936666025 -0.0304507464034703 -0.256832501257382 -0.256049311277396 0.166422950644326 -0.161038262615626 0.331370220341679 -0.186643435449267 -0.218790041695616 1.51960862384136 -1.00096157524384 -0.161394543993830 0.174072956672029 -0.163533598529977 0.836142565039925 0.687065721466555 0.184342631276115 2.65167475719223 -0.9820440584056 -0.68070243407993 1.75163490294052 -0.42208321267127 2.0846430057305 1.05660350255717 -0.0345669670772764 -0.358828423526217 -0.284798691260449 -0.449693430840982 -0.778124131454715 2.40214814415516
Rv3269 -0.190999654169795 -0.715254414303994 0.823267744452497 -0.234941376102639 -0.827073706572597 0.131845056750119 -0.387646352909959 -0.380668185202232 -0.653066645228447 -0.096159352653516 -0.897603949022115 0.358307502343947 -0.354369111001367 0.254949435908707 -0.79689550202321 -1.93599405810401 0.671361195904962 0.429864292669484 0.69135951936658 1.54755749814347 0.0180438918230028 1.88082334556317 0.124163451226556 0 1.44341990956212 -0.420022826641876 -0.218799723777013 0.0350131889107423 -0.661218491114546 0.791086853340904 0.903680886543616 0.752404758030024 -0.645406189712522 -0.548221399926501 -0.64470875481985 -1.39844636345481 1.72051320073845
Rv3270 -0.0329857190337329 -0.213475749215677 1.18816461573799 -0.220984468649559 -0.277186773900896 0.810955100030873 -0.237249194554825 -0.133301267621982 -0.377432311452258 0.142200414863638 -0.313179405902507 0.0901452380876518 -0.266044526755562 -0.296579015210222 -0.323175465697745 -1.30324052205842 1.10240853400148 1.22290713188120 -0.156287939925615 2.16301608422376 -0.144500469239931 0.742073903942353 0.399816682074247 -0.0868809166072106 1.63477759010457 -0.0940017774306122 -0.222419682236370 -0.0725793052440318 -0.605990820872005 0.0109321897094466 0.911838835186895 0.485204232604724 -0.222707822629489 -0.251141813755150 -0.319190398963156 -0.629015521610005 2.10052222586675
Rv3507 -0.500219551884807 -0.807950787114044 1.21108037930670 -0.341971135070085 -0.0181642804895801 0.514773912525635 -0.0729736084372158 -1.48185217504246 -0.68602417126298 -0.072709133296136 -0.367459950423356 -0.0995732674566442 -0.426126438427171 -0.228282844512308 -0.0799162780464286 0.0520305564612102 1.12880462628476 0.921292726130429 0.713280578076983 2.75872601758661 0.205413969989566 1.25710526426437 -0.449082785335892 0 0.550557044503262 0.419781344195571 0.321964049507413 1.16516639992498 -0.181323470459915 1.45446945073542 1.25434734133554 -0.435802146113894 -0.231980988910169 -0.308127314611398 0.414602908995844 -0.0641127945569656 1.25949575482839
Rv3516 -0.276393688573218 0.0686996246225048 0.549073011712729 -0.229793033060481 -0.464648404282296 1.56312110746863 -0.0783952507437542 -0.491394856847872 0 -0.594588207481267 -0.469897933058593 -0.285226304162416 0.149729438516004 -0.373987588801052 0.187693496665127 -0.0651983522211752 0.755527640437954 0.156331244444303 -0.632965284253603 1.55330582113173 0.238307121246013 0.312437251410963 0.343000788858171 0.00745909577413722 -0.0677515093991468 0.370485055673782 0.789082431637047 -0.0350833790402904 0.294729531112887 0.335366745546857 1.48322761861617 0.471656421925346 -0.457978332004335 -0.173440824258102 -0.416124352650450 -0.593395070108188 0.564148968507231
[+] Show/hide bicluster #98 motif PSSM #1. bicluster 98 motif PSSM #1 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0.285714 0.428571 0 0.285714
2 0.285714 0 0.714286 0
3 0.785714 0.071429 0.142857 0
4 0.071429 0 0 0.928571
5 0 0.285714 0 0.714286
6 0.142857 0.214286 0.5 0.142857
7 0.142857 0.785714 0.071429 0
8 0.642857 0.357143 0 0
9 0 0.285714 0.642857 0.071429
10 0.857143 0.071429 0.071429 0
11 0.428571 0.071429 0.5 0
12 0.428571 0.357143 0.071429 0.142857
13 0.357143 0.214286 0 0.428571
14 0.071429 0.5 0.428571 0
15 0.5 0 0.5 0
16 0.142857 0 0.714286 0.142857
17 0.214286 0.285714 0.285714 0.214286
18 0.214286 0.142857 0.642857 0
19 0.785714 0 0 0.214286
20 0.571429 0.142857 0 0.285714
21 0.571429 0 0.214286 0.214286 [+] Show/hide bicluster #98 motif PSSM #2. bicluster 98 motif PSSM #2 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 0 0 1 0
4 0 0 0.5 0.5
5 0.25 0 0 0.75
6 0 1 0 0
7 0.75 0.25 0 0
8 0 1 0 0
9 0 0.5 0.5 0
10 0 0.75 0.25 0
11 0 0.75 0.25 0
12 0 0.25 0.75 0
13 0 0 1 0
14 0 0.25 0 0.75
15 0 1 0 0
16 0 0.25 0 0.75
17 0 0.25 0.5 0.25
18 0 0 1 0
19 0 0 0 1
20 0 0 1 0
21 1 0 0 0
22 0 0.75 0 0.25
23 0 0.25 0.75 0
24 0 1 0 0 |