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[+] Show/hide bicluster #72 rows and columns.
bicluster 72
Mycobacterium tuberculosis H37Rv
17x36
[+] Show/hide bicluster #72 rows (genes).
bicluster 72 genes
Mycobacterium tuberculosis H37Rv
17
[+] Show/hide bicluster #72 rows (short gene names).
bicluster 72 short names
Mycobacterium tuberculosis H37Rv
17
short_name
[+] Show/hide bicluster #72 rows (long gene names).
bicluster 72 long names
Mycobacterium tuberculosis H37Rv
17
long_name
[+] Show/hide bicluster #72 rows (NCBI RefSeq gene IDs).
bicluster 72 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
30
[+] Show/hide bicluster #72 gene upstream sequences.
bicluster 72 upstream sequences
Mycobacterium tuberculosis H37Rv
15
upstream
[+] Show/hide bicluster #72 columns (arrays; conditions).
bicluster 72 arrays
Mycobacterium tuberculosis H37Rv
36
[+] Show/hide bicluster #72 ratios.
bicluster 72 ratios
Mycobacterium tuberculosis H37Rv
17x36
GENES Amikacin Antimycin BZA Cap Cephalexin Cerulenin Clotrimazole CPZ DIPED Dipyridyl EMB GSNO_CFZ GSNO_CPZ GSNO_menadione INH Levo menadione NaN3 Novobiocin NRP_1 Oflox PA_21 PA824 Palmitate pH4_8 Rif Rifp Rox starvation Tet TRZ UV X_109 X_111891 X_121940 X_59
ORF05528 0.054241471839306 -0.106477242992147 1.46103089728606 0.389384455959356 -0.0215329192316386 0.048343945455844 -0.301238424386927 -0.317740832391717 -0.430016251319798 0.254853557091573 -0.46732922467235 0.0564621009554044 -0.0853964591225121 1.64015000758851 -0.279970584368247 -0.264953640742246 1.01582003764213 -0.164132304498303 -1.18489909909629 1.12667465060293 -0.220414722859071 0 0.0381545110349546 -0.0788932385822058 0.296209256156609 -0.439737809969494 -0.291949434442583 1.03776894154496 0.133246192740438 0.440536445239918 -0.256358945987284 -0.123848841889571 -0.0249666184686317 0.122444839026808 -0.327068882172351 -0.186891385005471
Rv0135c 0.249500767425078 -0.664116444761186 1.35251068351441 -0.0987632594128081 -0.344481137947554 -0.0741606848363823 0.0173399708723711 -0.20510956764902 -0.417122778821279 -0.448463729521974 0.0183606332044611 -0.273761350389124 0.409488909513506 -0.181409133489034 -0.408611000649699 -0.441263925244992 0.586514297307973 0.48080792867693 0.236815577228713 0.479429836539972 -0.499597271196518 -0.335153917857562 2.26547440596684 0.236815577228713 -0.418936870864344 -0.340946307994452 -0.47196671037632 0.641608306696198 -0.180423977079196 1.46881182321728 0.236815577228713 0 0.263641928489799 -0.333588878595872 0.202355177815918 -0.061944352617914
Rv0136 -0.457956089614418 -0.525620389515108 1.45847447338762 -0.441599529213056 -0.372124133368786 -0.433708385674146 -0.279293489384817 -0.138459425076720 -0.478737389452515 -0.123397667112848 -0.111929401797373 0.352625608879603 0.262927585111042 0.308062114109120 -0.508909694086155 -0.485334699453814 0.352625608879603 0.352625608879603 0.352625608879603 0.20061268045606 -0.645914202130574 -0.135122208568097 1.83721590721317 0.352625608879603 -0.319213560479658 -0.646142875232178 -0.306665755405295 -0.179215799627154 1.04928306519642 -0.0602307161472989 0.352625608879603 0 -0.311195073793099 -0.500689804939852 -0.418689863276133 -0.379201727747518
Rv0163 -0.378405566357797 0.0106907407964835 -0.706223508637175 0.375716858194697 -0.0831187007189645 -0.211781881986258 -0.0908281937527102 -0.375762180511747 -0.421446179182582 -0.311275471706494 0.0104385864661706 0 0.324178255823746 0.872807096007512 0.121528786057846 -0.329565827215591 0.857212524001898 0 0 0.406313640405135 -0.053790620817538 0.12497761566277 0.855278271899768 0 0.0689682534869153 0.119987320802011 -0.64497156882673 0.402949563087919 0.166206885885297 0.902052078061317 0 0.00941806914488985 0.182263233502248 -0.234511281968401 -0.659528145705305 -0.427242635918248
Rv0790c -0.234766283702597 -0.131541912170400 1.98639110156176 -0.771645588363403 -0.0114906194686743 0.143223931689574 -0.168922461350756 -0.368757156581167 -0.0226761092910253 0.0323661490634002 -0.246639863661700 0.456017818353532 -0.378592173407644 1.23443722490665 0.00556363497930474 -0.178864029221887 0.800937628190493 0.456017818353532 0.368578945938007 0.964384190577512 -0.457758259508809 -0.521611167879122 -0.145588323698657 0.335413498403895 0.313591335409854 0 0.394484992538848 -0.50143256333044 0.0390760033492634 0.456017818353532 0.238159137699091 0.0412135537409489 0.0211652648538035 -0.0347161345042436 -0.0652593752644882 -0.260952938354732
Rv0792c 0.486534869015365 -0.120203046353512 1.79958986235472 0.49637722961893 0.00611583383837923 0.134208849299817 -0.0933287848686626 -0.589145655377473 -0.0223638124852019 -0.149868003026967 -0.132732386540922 0.474002156312192 0.0087677214931284 1.58118900233141 0.384303724202500 -0.138994224237149 1.38092109508683 0.474002156312192 0.171442924762556 1.29960107523353 -0.261614471836284 -0.551044773162677 -0.330589174243115 -0.105195594764298 0.195103342050474 0.0282561634290107 0.0306160576948093 1.02542287472391 -0.901130304868263 0.474002156312192 0.0653661850398495 -0.250309571204572 -0.0958746546107365 -0.108534574482374 -0.0221679529875814 -0.149875775286105
Rv0841c 0.331437090790195 -0.000694096474126467 1.27545647144589 0.263377356882981 -0.274201121035937 -0.201769781806343 -0.0616597925341797 -0.351559500182517 0.0814453790448604 -0.392148594932373 -0.120744708870740 0.264660490807922 0.125159142262258 -0.903110030260823 -0.295606183898509 -0.0124129271939471 -0.392566853676919 0.264660490807922 0.623249465625983 0.731453605701828 0.147528276091271 0.292973528799228 0.614873800405274 -0.386691169252016 0.36597644131378 0.645041892065012 0.0747890861221886 0.492423098330308 0.694332116630323 1.16674438332360 -0.050170145944865 0.164640239686492 -0.227621008591955 -0.252498246281131 0.815712462228186 -0.133435117963335
Rv1219c -0.229299100894269 0.504829571262715 0.070088429682424 0 -0.420924347790319 -0.223962682659819 -0.0261507136627726 0.133849606432398 -0.0693629652658165 -0.0423667300920407 -0.121539782274062 -0.337236553324368 0.513075786924863 0.166691355777543 -0.306929835005257 -0.334495465838475 0.186458767300906 -0.374314717116197 -0.246293943368396 0.872452812299403 -0.239392227581763 0.164637846992756 1.37520535504767 -0.890524056848393 0.88678698969079 -0.450812032963583 -0.669833607949172 0.258728843466779 0.480851260998855 0.000401004190984122 0.83915399273924 -0.29228200656284 -0.194260069390718 -0.0777687276663365 0.401419732484893 -0.219264504983281
Rv1894c 0.968404484405825 -0.429733029743767 1.80801441598979 1.09392085719131 -0.191580012446548 -0.31462361595965 0.0228240905655706 0.0620180084385397 -0.266706788175942 -0.295294944494466 -0.464557650071465 0 0.141698196598993 0.831713127722245 -0.469108840923809 -0.190850050823889 0.598103373025377 0.0476024028226474 0.562451587143841 0.286381918843004 -0.609163791766043 -0.192178610124782 1.30059374905448 -0.123357276676597 0.201494681552345 -0.285503212888411 0.0245170383695166 1.83490105942235 0.264785074121021 1.6829686493194 0.887031600919169 -0.366963437894398 -0.459250068586972 -0.463335475198266 -0.174988580689876 -0.306608120507385
Rv1995 -0.0898289891574826 -0.415957907401876 0.174319735045228 0.211593945181575 -0.383230564854338 0.138238582466475 0.225604765644483 -0.201602941323409 0.077851215671307 -0.178085886661814 -0.322262545686522 0.222353315056115 -0.213723404030349 -0.501301011250768 -0.415569254422505 -0.180317601089607 1.06673209502066 0.222353315056115 -0.219215764821886 1.46109048285424 -0.140306246710563 -0.393536237846948 -0.339345457025785 -0.206787203734278 -0.123304537205650 0.197348346547729 -0.43140104613749 0.454352341406126 0.428098096583089 0.600914824727303 1.63689747139097 -0.253289613347102 -0.111239548716112 -0.674392929341597 1.50147849995364 -0.270393470193992
Rv2103c 0.503349770649152 -0.963262157954829 -0.218133711155053 -0.0602528900231026 0.119849590960060 -0.125761626124441 -0.17927319440739 0.129490423586635 -0.319418425373871 -0.721108738150071 -0.228696798578507 0.0606573815949409 1.12568392220239 1.27388949255829 0.283803190034055 -0.264995377544621 1.48255499509667 0.0606573815949409 -0.309910800766244 0.375643911254262 -0.410801636054605 -0.601313092790936 1.69469680127614 -0.799309821493418 0.0543563242541901 -0.377957811424080 0.333996924511798 0.664942212451266 0.57430441189233 1.65801857766254 -0.700973559942188 -0.286838835904962 -0.123151202106608 -0.541496027697041 0.265859266400874 0
Rv2497c 0.0617291232419624 -0.554261931587222 1.13197611919290 -0.00421410485883475 -0.288847688146300 -0.190741356989666 -0.54744522400582 0.2539276834702 -0.027168919026096 -0.554486974334629 0.0706039102251253 0.572035566045534 -0.164042177336297 0.459161019707685 -0.0204478172761868 -0.617160607487298 0.480798288916906 0.312974759604786 0.890573619042668 1.10374935475413 -0.465580429534209 -0.400246916101688 1.77014067782058 -1.06885825110498 0.237082300580955 0.31588871109692 -0.480494808649665 0.182046999999258 -0.199429396850245 0.286651600837873 0.903964852636177 -0.570727387248808 0.199983297917634 -0.616751711827507 -0.261435331076102 0
Rv2526 0.46057269412785 -0.648323839085956 1.17003404920519 0.384702586161796 0.356852106243079 -0.271881858078692 -0.630893536940876 0.151067416515666 0.00279857586095703 -0.387266617863487 -0.156243890750889 0.165785405582152 0.403312049938562 0.624237310741976 0.464511859452517 -0.192231355726728 0.476606874126998 -0.116091993349854 0.187791431314113 0.785302035169763 -0.143115282963391 0.348572568651303 0.507303357342086 -0.532264523400066 -0.459410076349265 0 -0.401747515574236 0.174223960842972 -1.17615842125072 0.739673019155833 1.59314546084434 -0.442667944917418 -0.221642403526703 -0.320674580228649 -0.0440768651601269 -0.0884644001718632
Rv3270 0.0657228667062694 -0.213475749215677 1.18816461573799 -0.382411080839793 -0.220984468649559 -0.277186773900896 0.0726460942022185 -0.389409596932805 -0.133301267621982 0.0484300422805523 -0.313179405902507 0.288899610743477 -0.511129246081799 0.56087077777583 -0.296579015210222 -0.135085412365148 0.951332835955017 -0.102650571488374 1.22290713188120 -0.156287939925615 -0.162473406672849 -0.403734048668279 2.16301608422376 -0.144500469239931 0.742073903942353 -0.0940017774306122 -0.222419682236370 -0.0725793052440318 -0.501399921495634 0.0109321897094466 0.485204232604724 0.119460062824381 -0.222707822629489 -0.251141813755150 1.51553630632262 -0.629015521610005
Rv3516 0.589493699943884 0.0686996246225048 0.549073011712729 -0.390678579783247 -0.229793033060481 -0.464648404282296 -0.250050444488582 -0.428998990907803 -0.491394856847872 -1.01903151651983 -0.469897933058593 0.227262814266217 0.0509602028205942 -0.0231612198630863 -0.373987588801052 -0.273610378730311 1.39086472321849 0.227262814266217 0.156331244444303 -0.632965284253603 -0.136115277642774 0.435996501658337 1.55330582113173 0.238307121246013 0.312437251410963 0.370485055673782 0.789082431637047 -0.0350833790402904 0.641748116974654 0.335366745546857 0.471656421925346 -0.869650015601999 -0.457978332004335 -0.173440824258102 -0.131013787428719 -0.593395070108188
Rv3573c -0.0264280657893872 -0.36163451639052 0.491429052935632 -0.364691875020755 -0.21968714696335 -0.355022860026474 -0.242281218567305 -0.190695798300172 -0.525916466193263 -0.468542204087511 -0.137316809906565 0 0.827506533260536 0 -0.0747704660409932 -0.363140691438797 0 0 0 0 0.153146034496484 -0.0730851297526765 0.873644194893665 0 -0.152365250718431 -0.580045308217715 -0.436051534271136 -0.0829632993114262 0.246633705883367 0.170662997018964 0 -0.492862340488247 -0.352810736529522 -0.383897115313018 -0.0815971583539682 -0.305131274537710
Rv3574 0.362384302992188 -0.408951939236836 0.78037316001057 0.810296393832581 -0.170157989559998 -0.749524866400805 -0.197522259402956 -0.0286212339245967 -0.774778463428752 -0.175904940114191 -0.822689939108513 -0.1611289599642 -0.131680784034521 0.252438712903930 -1.56201856865301 0.216003635545175 0.582684456639404 0.0269897395454740 0.815376245413894 -0.179510591616504 -0.329483391642749 -0.485789271058765 1.41657904321309 0.541209812230384 -0.00751703882206183 -0.0273552422899457 -0.431400076844089 1.19063328780241 0.0842466203345402 1.50483734543530 0.81490269211373 0.00259620235514646 -0.671237756394652 -0.354565229895897 -0.571756339322829 -0.648597677415491
[+] Show/hide bicluster #72 motif PSSM #1. bicluster 72 motif PSSM #1 Mycobacterium tuberculosis H37Rv 19x4
POSITION A C G T
1 1 0 0 0
2 0.125 0.25 0.625 0
3 0.125 0 0 0.875
4 0.75 0 0.25 0
5 0 0.5 0.25 0.25
6 0.75 0 0.25 0
7 0.625 0.125 0.25 0
8 0 0.5 0.125 0.375
9 0.875 0 0.125 0
10 0 0.75 0 0.25
11 0.25 0 0.5 0.25
12 0 0.25 0 0.75
13 0.25 0 0 0.75
14 0 0.375 0 0.625
15 0 0.125 0 0.875
16 0.5 0 0.5 0
17 0.375 0 0.625 0
18 0 0 0 1
19 0.75 0 0 0.25 [+] Show/hide bicluster #72 motif PSSM #2. bicluster 72 motif PSSM #2 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 0.2 0.8 0 0
2 0.8 0.2 0 0
3 1 0 0 0
4 1 0 0 0
5 0 0.4 0.6 0
6 0.2 0.6 0.2 0
7 0 0 0 1
8 0 0.4 0.6 0
9 0.6 0.4 0 0
10 0.2 0.8 0 0
11 1 0 0 0
12 0.6 0.4 0 0
13 0 0.2 0.6 0.2
14 0.2 0.2 0.6 0
15 0 0 1 0
16 1 0 0 0
17 0 0.6 0 0.4
18 0.8 0 0.2 0
19 0 0.4 0.6 0
20 0.4 0 0.6 0
21 0.2 0.4 0 0.4
22 1 0 0 0
23 0 0 0.8 0.2
24 0.8 0 0.2 0 |