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[+] Show/hide bicluster #58 rows and columns.
bicluster 58
Mycobacterium tuberculosis H37Rv
21x38
[+] Show/hide bicluster #58 rows (genes).
bicluster 58 genes
Mycobacterium tuberculosis H37Rv
21
[+] Show/hide bicluster #58 rows (short gene names).
bicluster 58 short names
Mycobacterium tuberculosis H37Rv
21
short_name
[+] Show/hide bicluster #58 rows (long gene names).
bicluster 58 long names
Mycobacterium tuberculosis H37Rv
21
long_name
[+] Show/hide bicluster #58 rows (NCBI RefSeq gene IDs).
bicluster 58 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
34
[+] Show/hide bicluster #58 gene upstream sequences.
bicluster 58 upstream sequences
Mycobacterium tuberculosis H37Rv
20
upstream
[+] Show/hide bicluster #58 columns (arrays; conditions).
bicluster 58 arrays
Mycobacterium tuberculosis H37Rv
38
[+] Show/hide bicluster #58 ratios.
bicluster 58 ratios
Mycobacterium tuberculosis H37Rv
21x38
GENES Amp Antimycin ARP4 Ascididemin_Natural_product CCCP Cephalexin Cerulenin CPZ DCCD Deferoxamine DNP Eta GSNO GSNO_CPZ INH Levo mercaptoethanol methoxatin Min_med__succinate_ Mtm Nigericin Oflox PA_1 PA_21 pH4_8 Procept_6778 Rifp starvation TRC TRZ UV Valinomycin Verapamil X_111891 X_111895 X_121940 X_124196 X_241
ORF03128 0.339052809171232 0.830336387944665 -0.710845379342892 -0.779861149858229 -1.88113665837083 0.776305411812315 0.543003953269909 -1.23378174244095 -0.78155342490992 1.06027917531689 -2.5682351532212 0.57758229711039 0.792539487364333 -1.34502447996565 1.04436845940752 0.690456272803524 0.447048048564505 0.163797019433933 -2.1006926402694 0.738135684766587 0.362951141510076 1.30683863093266 0.971527759595975 0.685246763159724 -0.525784090930583 0.313038380743437 -0.777673402683738 -1.00682318270269 -1.14711688748609 -1.16346406055355 0.498280268357639 -1.19895373516234 -0.270794473931237 0.632240672359829 -0.997813303750744 -0.345107341559631 0.878389176223603 -0.575732297332752
Rv0199 0.124953170036613 0.686878902113246 -0.966155793698628 -1.04555414250220 -2.01405872902617 0.523590737784378 0.95494668590711 -1.63365196432319 -2.04488822046329 1.10520243372590 -1.48725280448771 0.724976711953605 0.84214790987911 -2.49653718092817 1.17952101178725 0.0983894190378818 0.561818956351388 0.663610601849944 -1.36252997735756 0.397814889131059 0.0562437745795602 0.170948372400569 0.643541181509321 0.571936272653741 -0.527365545068539 0.413894383260538 -0.749464957296922 -1.40392187953429 -0.61911122284587 -1.92577929649501 0.0223323028853183 -1.79314932633984 -0.656293938217594 0.90650890921559 -1.16426979906632 -0.415376134379645 0.451497211337378 -0.919819853125404
Rv0440 0.38420947405278 0.676565258124309 0.557224774748427 0.401226142888433 -1.72340403483479 0.413455967917031 0.615507402926878 -1.25021265333281 -0.953642425138007 0.629774457610981 -1.36625080736420 -0.0162475024984646 0.408433374160332 -1.92381247331939 0.331273052079152 0.155875313130733 1.15390373300926 1.23264799031766 -2.16135136062443 0.783905921384977 -0.208212376566836 0.459235974073737 0.480426460381045 0.295671827048982 -0.153997774018979 0.174467341561551 -1.69534213972240 -1.98672445596302 -0.548741040913473 -0.995063678210466 0.741671887099948 -0.522610146505348 -0.424488855613276 0.532472965170746 0.314337844481498 -0.167110263109252 -0.097379917383531 -0.930084853094553
Rv0500 0.337464344321958 0.316749605838526 -1.63102862540684 -0.456082730902880 -1.03270226090538 0.273517606451434 0.354767277087802 -1.26576895127063 -2.11420321860289 0.173266818276008 -1.34395396735568 0.165068995214189 -0.52905108155033 -1.19343144124532 0.820338171637849 0.352078464727752 0 -0.0550979926625629 -1.28943100162020 0.928934509238787 0.242217839269282 0.251870487646431 0.104348272101180 -0.287203425233444 -0.198070796768094 -0.0469119718678695 -0.363095581920428 -0.35424457252947 -0.639789985786611 -2.66239927374101 1.27311374277925 -1.15764797389348 -0.626607192181228 0.384722811742286 -1.12268407619985 -0.232668057673228 -0.106772526011201 0.44513026722413
Rv0554 0.0709252140182527 0.855786031414847 -1.61423063606817 -0.0103038339121614 -2.26719499647026 0.445625931384772 0.390330050754858 -0.616638130544639 -1.996880013288 0.578102627702934 -1.82222144492244 0.519127533643804 0.300281013644379 -0.644182420974848 0.726523168356738 1.27606554089062 0.530415824610896 0.233492181606108 -1.13136790883619 0.686417030085404 0.624418815044054 0.65037921377671 0.448049582848336 0.266721501794199 0.088225503184778 0.415685944319598 -1.34772264985271 -0.979440663991453 -1.87665104312520 -2.07362167108433 0.761146805373262 -1.94567384375471 0.0502266198738161 0.613485864734484 -0.412638534992456 -0.0131302596892112 0.403763728562574 -0.408743390537908
Rv0637 0.72578532986955 0.444973947401381 -1.60516179235022 0.00265886194251642 -1.79437527949283 0.117816850669694 0.639696687036135 -1.57519862991381 -0.78131666130012 0.558028624676713 -1.87364264036227 0.215824987763351 0.619379993030465 -2.70820284861517 0.95978040554838 0.59213967019354 0.557431791289017 0.911441994113128 -1.18221340802114 0.259070078318455 0.534800792335918 0.734594903833436 0.437038958136222 0.0374095731753883 -0.683351194033479 0.132207893222417 -0.247868050122213 -2.92328556429694 -1.59737803514046 -0.950029216975062 -0.195599858850411 -1.39253832776696 0.258301688871315 0.682263388689103 -0.428566584517888 -0.511095497064067 0.520308944789034 -0.426637286800699
Rv0652 0.348657974192258 0.468192182163371 -0.675812786067808 0 -1.46310860632856 0.76391120408386 0.58613479033746 -1.13009984462757 -2.0485753572207 0.604698582642357 -2.68057201212244 0.243921566508116 0.717155311630074 -2.0666723135433 0.616118656604377 0.460102651868692 0.160182530772286 0.415720408109897 -1.04666947758741 1.02083910421741 0.588792100502222 0.665219500012887 0.321484685558956 0.507275592271316 -0.664297334690217 0.334339266735861 -0.0767450946806989 -1.26341088883087 -0.100350761921507 -1.92685557279811 0.815657317836562 -1.38909647370536 -0.135580174234082 0.417171782968367 -0.339212751128187 -0.407706639265219 0.241749955998076 -0.209220594743754
Rv0716 0.492140956011764 0.507472624778967 -1.52261484118874 -0.310280526836341 -2.82181647258834 0.298994124755385 0.355665557566339 -1.21692126576609 -2.27366591866096 0.353124913396229 -1.98055647951613 -0.111291519450627 0.457787888477454 -1.9566382967586 0.178217575655506 0.373718214933898 0.431157045586959 0.216503614697558 -0.149100083423091 0.4354377602683 0.242618740810555 0.488604274812361 0.485684002661393 0.507993810820667 -0.697523813669573 -0.0638621282374238 -0.402430050837400 -1.29047631716909 -1.67341866566232 -1.56878531908768 0.308259087434348 0.132704060897531 0.318753700545228 0.338709548608687 -0.423880872819568 -0.304949215143812 0.246857208095315 -0.229099545862639
Rv1386 0 -0.076096390154494 -0.391429907301601 -0.829443123431208 -2.36016759164181 0.309101519893940 0.92638567025985 -1.42214152293986 0.0562375440407584 0.196288800927446 -3.04943896787918 0.190321977189208 0.262283471805909 -1.79032258592985 0.662393168274094 0.593791928857907 0.357615879468407 0.223138146384032 -2.20293779242944 0.114243500734439 0.298778484666462 0.340682647856563 0.758405235707391 0.173605390809613 -1.31331842968064 0.310336632366852 -0.8858313449178 -2.59431798373211 -1.31941448629719 -1.91004144410451 0.694275021093336 -0.165012028871495 -0.328790056179934 0.195428801972383 -0.740367938912833 -0.661525985138454 0.509773041647538 -0.215281292078822
Rv1387 0.433849197077611 0.512827893100084 -0.919888965508155 -0.262057562526509 -2.24104325295561 0.483842750004348 0.714343629448479 -0.480592227989449 0 0.467166446353398 -2.67861031400297 0.279247223939395 0.478804288401874 -0.733040853345725 0.631968031206629 0.460966347551484 0.381652300251161 0.388625461348173 -2.21421197602324 0.141422845802297 0.0307482682010322 0.398922392224878 1.63222361412320 0.975324041298756 -1.84369848865962 0.249064143433712 -0.739953218525964 -2.41332328499802 -1.70115047124024 -1.79311672871027 0.687065217478976 -0.4341096349044 -0.287659463988606 0.786519965214564 -0.194942293172539 -0.744888429339364 1.33659036092409 0.0108976180346228
Rv1400c -0.441060299946179 0.548605669853432 -1.44334942449889 -0.373890036013409 -1.58507610011324 0.455000585458072 0.310614245479196 -0.774182233919729 -1.44665102609388 0.207578437741763 -1.51841039815328 0.484182677755257 0.803302724132674 -1.35693827915085 0.701240692595636 0.205928143870696 0.377838611630968 -0.129607186843099 -1.43972065270832 0.478775351890268 0.0849599863689522 -0.320405908855853 0.920736674773886 0.310388787695869 1.00279488198191 0.60783041948489 0.298766168604601 -0.465963242867259 -0.67937671166555 -2.0326018852301 0.709546314682214 -1.37292164292884 -0.386508774553368 -0.0314244978828492 -1.25218672690635 -0.201305139624466 0.327001438995762 0.00371121378257767
Rv1427c 0.42217751603769 0.167746993008526 -1.91348014942766 -0.67520930310369 -1.33459583707303 0.387663246738743 -0.193930391867663 -0.60159209282367 -1.74320264254214 -0.00730511723486365 -1.21770813032866 0.762325765516332 0.699657275310142 -0.0171547582413663 0.460968159324624 0.0370277025188606 0.585176081131761 0.294203893176946 -0.834675035219207 0.0678483765047116 0 -0.416171601986715 0.830906290680175 0.88706915716288 0.483021331295758 0.110497652586854 0.437682864644624 -0.715248266400928 -0.723892317890522 -1.62965975985097 0.194232361015093 -1.86538956518264 0.100099855830650 0.338484648452504 -0.711810712036396 -0.563631381049706 0.563032226723662 -0.134741527674572
Rv2062c 0.414791116497345 0.828936220251498 -0.836452643269788 0.0158776003487596 -2.66201247057688 0.371779337490227 0.0772229503696948 0 -2.11016684949305 0.383969663589392 -2.14250177886829 0.133839735965107 1.03322888213068 -1.29265002258413 0.0437508807227874 0.647418946428537 0.225013347690467 0.626307807451913 0.0911926863996469 0.114270790962417 -0.123012369190411 0.44115441372111 0.892217346912825 0.66840841008225 -0.332045012927958 -0.0944682156994922 -0.534969393962178 -0.839276678165599 -1.08476000144765 -1.91941851449840 -0.415783216253143 -0.905832046514977 0.169252907194365 0.706952979065021 -0.741450107452015 0.0358412491183468 0.483271156548189 -0.707551304552251
Rv2214c 0.00324007306221794 -0.0549501295149809 -1.59449903020114 -0.676882868359309 -1.61421982608755 -0.104379025798250 0.103588905293995 -0.672033447328855 -0.8234968392102 0 -1.00350058061631 0.523368988221518 0.719935401814401 -1.20489953067756 0.499400253653537 0.689643363464424 -0.163828442347168 0.110189573197270 -0.639946631652466 0.537131675366686 -0.248856748583449 1.65667537842315 0.609334437790861 0.146689287213716 0.245777287457597 0.257183051166208 -1.24359300227884 -1.15766554947348 -1.70670065789032 -1.61384240864916 0.0223052678581939 -0.804137788164777 -0.380251421581781 0.0930283390136857 -1.02579214299853 -0.881488945603265 0.381102458476272 -1.07034655942697
Rv2229c 0.81005382242974 0.146201853400262 -1.18302480281739 -0.509111992245425 -1.31189990464682 0.169167148757993 0.129698994331929 -0.105499747126116 -0.885278772745759 0.694770596737455 -0.672778757870089 0.356474046292700 0.360050918170615 0.106155288484341 0.435879968790876 -0.278553508222467 0.182744159994318 0.218993908550733 -1.10204750699575 0 1.23837429300267 0.232857180460983 0.165435263964212 0.340101962776124 -0.688443727166195 -0.181574504984791 -0.637176713838858 -0.577191383714844 -1.50478407560115 -1.51509945553568 0.0406452853955232 -0.561136023937272 -0.426224203473808 0.0713900170543304 -0.763919662169918 -0.980714260272388 0.0898811257103302 -0.30393183920754
Rv2448c 0 0.233428782968382 -1.96067872466405 -0.862265895013896 -2.03475949074303 -0.104087873849731 0.466542285566544 -0.495737129156564 -0.611072240769153 0.0218260558442717 -0.903259890871346 0.093558614376609 0.351604837762811 -1.06356937821542 -0.369179328231078 0.899993276627759 -0.199564752476682 0.601482997777968 -1.45995553230565 0.282794148548093 1.07758160755973 0.174712234901383 0.871987887755245 0.759026124454968 -0.79164627363357 -0.0457063232773176 -0.455696782207712 -1.72449226870751 -1.08604567068008 -1.02704712076183 0.304518220688553 -0.771950746449857 -0.417618275385162 0.469842798141088 -0.751194751891106 -0.0157168406222739 0.529667778552834 -0.534543335349631
Rv2883c 0.56473203870033 -0.0786906741365716 -2.30174086066638 -0.356426795845387 -1.11426823640428 0.277629802398981 0.217623910219443 -1.33433641310274 -0.624651801116457 0.374450895526098 -1.86021838265799 1.04806679953897 0.092908330583691 -1.56389251311949 1.34087240074751 0.0511454977906255 -0.519293716664261 0.0545050890582318 -0.205401976853444 0.498422828150021 0.349723191141848 0.281239780689914 -0.138000852178299 -0.436125838902606 -0.0312731909568981 1.36952899394085 -0.361496561889127 -1.5520108433182 -0.587492542414846 -2.47874055624069 0.569642098973677 -0.609230610133275 -0.817220503446806 0.259474424536564 -0.927003970919436 -0.103953981969689 0.192612033740721 -0.473399907389716
Rv2908c 0.542897735042613 0.450359921172161 -1.02863109248057 0.0771508454735149 -1.42057373147608 0.314792713461363 0.581852490948591 -0.796652295740104 -1.77703370623505 0.50900122961484 -1.41508866148604 0.367588247247334 0.235656323920008 -1.64366663974923 0.632907215814014 0.224874959164764 -0.0622102126760778 0.254566357039398 -0.34054669535378 0.583746450900358 0.451225261652018 0.374024793376470 0.211856540213028 0.146037931697777 -0.502985889533995 0.138778158467829 0.318273817948253 -0.371885058627295 -0.431355028607442 -1.58185623293756 0.553550818405317 0.285224509811634 -0.129615555905867 0.38267867270414 -0.0905114052978767 -0.23968343776513 0.412582755599341 -0.421691678135474
Rv2996c 0.656626321775562 0.584239585646257 -2.25822763061241 -0.511492518770115 -1.44295404215348 0.582750622430399 0.87108784230271 -1.13270615310353 -1.96339163085091 0.90671392389269 -1.96588140122150 0.0670582908570237 0.793925671505283 -1.54250206296158 -0.0829596944420448 0.852382374822965 1.27758668479216 0.834560223531689 -1.45100261788881 0.636902600054752 1.00588574467648 0.922385456925949 0.874062946676311 -0.0637300080700973 0.229343287638559 0.308596575902374 -0.985332275477483 -0.803869663615694 -1.62786868021099 -2.89180872345939 1.24166539936538 -1.00513776729205 0.164472584960739 0.740903388221308 -0.680429840839203 0.322284019703044 0.366214494436718 -0.945969107426113
Rv3624c 0.667069989083456 1.24097566770980 -0.781107447868725 -0.0126957413687888 -0.151222856169116 0.182282334267956 0 -0.994261959853852 -0.507058652387541 0.992896663836348 -0.831357076479846 0.514592747946853 1.02252807652049 -1.96646044638595 0.765432161252431 -0.0611012434211342 -0.093996264776959 0.994409663215517 0.775600531705749 0.751348320052524 0.437653746628404 -0.21475932236249 0.56638111738368 0.965772548041295 -0.86458360082928 0.428647629917014 -0.42670595122717 -0.760736944122156 -1.08133186139868 -2.72437711185116 0.278581726216426 -2.42426204690336 0.069645395301952 1.07925853421802 -0.366686791116594 -0.260513587137719 0.832398958567826 -0.957268632426806
Rv3628 0.408488662795789 0.108577451903130 -0.843377125061755 -0.585952075031828 -0.561112770435261 0.246936967854618 1.07422940100789 -1.23916645509669 -1.94388090081585 0.772189443022952 -1.17845687848817 0.1886136244158 0.505540934101782 -1.34015474679969 0.553207431752737 1.31724412888041 -0.0266283810986218 0.151608633339169 -0.99057219097758 1.18335233933349 0.397585648999845 1.53314272699026 -0.39498558762177 -0.566776262798367 -0.232270292115176 -0.0491430857467448 -0.518310602054479 -1.66036909736411 -0.631480794312751 -1.52007744676307 1.62274031704609 -0.91824354451203 0.310368840760567 0.508665734403367 -0.59413117812203 0.5472742574729 0.0740863045395249 -0.829961520526399
[+] Show/hide bicluster #58 motif PSSM #1. bicluster 58 motif PSSM #1 Mycobacterium tuberculosis H37Rv 20x4
POSITION A C G T
1 0.1 0.7 0.2 0
2 0 0 1 0
3 0.9 0 0 0.1
4 0 0.6 0.3 0.1
5 0.2 0.1 0.6 0.1
6 0.8 0.2 0 0
7 0 1 0 0
8 0.2 0.1 0.7 0
9 0.3 0.1 0.6 0
10 0.2 0 0.4 0.4
11 0 0.7 0.3 0
12 0.7 0.2 0 0.1
13 0.1 0.2 0.4 0.3
14 0 0 1 0
15 0 0 0.1 0.9
16 0.1 0.9 0 0
17 0 0.6 0.3 0.1
18 0.7 0 0 0.3
19 0.2 0.8 0 0
20 0.2 0 0.3 0.5 [+] Show/hide bicluster #58 motif PSSM #2. bicluster 58 motif PSSM #2 Mycobacterium tuberculosis H37Rv 22x4
POSITION A C G T
1 0 0 0.2 0.8
2 0 0.4 0.6 0
3 0.6 0.4 0 0
4 0.8 0 0 0.2
5 0 1 0 0
6 0 0.6 0 0.4
7 0 1 0 0
8 0 0.6 0 0.4
9 0 0.2 0.8 0
10 1 0 0 0
11 0.4 0 0 0.6
12 0 1 0 0
13 0.4 0.2 0 0.4
14 0 0 1 0
15 0.6 0 0.4 0
16 0.8 0 0 0.2
17 0 0.2 0.8 0
18 0.2 0 0.8 0
19 1 0 0 0
20 0.2 0 0.8 0
21 0 0.4 0 0.6
22 0 1 0 0 |