|
[+] Show/hide bicluster #53 rows and columns.
bicluster 53
Mycobacterium tuberculosis H37Rv
24x40
[+] Show/hide bicluster #53 rows (genes).
bicluster 53 genes
Mycobacterium tuberculosis H37Rv
24
[+] Show/hide bicluster #53 rows (short gene names).
bicluster 53 short names
Mycobacterium tuberculosis H37Rv
24
short_name
[+] Show/hide bicluster #53 rows (long gene names).
bicluster 53 long names
Mycobacterium tuberculosis H37Rv
24
long_name
[+] Show/hide bicluster #53 rows (NCBI RefSeq gene IDs).
bicluster 53 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
36
[+] Show/hide bicluster #53 gene upstream sequences.
bicluster 53 upstream sequences
Mycobacterium tuberculosis H37Rv
19
upstream
[+] Show/hide bicluster #53 columns (arrays; conditions).
bicluster 53 arrays
Mycobacterium tuberculosis H37Rv
40
[+] Show/hide bicluster #53 ratios.
bicluster 53 ratios
Mycobacterium tuberculosis H37Rv
24x40
GENES Amp ARP4 BZA Cephalexin Cerulenin Clotrimazole Deferoxamine Dipyridyl Econazole EMB Eta GSNO GSNO_KCN H2O2 INH Levo menadione mercaptoethanol Min_med__succinate_ Nam NaN3 Novobiocin NRP_1 PA_1 PA_21 Palmitate pH4_8 Procept_6776 PZA Succinate TLM UV Verapamil X_109 X_111891 X_111895 X_241 X_59 X5CL_PZA ZnSO4
ORF03287 0.108557985887876 -0.0353423592038329 1.20009604561985 -0.238269495194412 -0.0817367324840045 -0.241528829775070 0.376005443459165 0.631548183180449 -0.0917265288952236 0.045154924049653 0.275835901638073 0.230578320481452 -0.918030924873623 -0.211873363202043 0.297850509860354 0.156886072439013 -0.00701010041946149 0.0664392227960346 2.85303115446010 0.268343410693358 -0.203535179444282 -1.03489147487247 1.02029040451992 0.181844180305162 -0.591934437180615 0.364044260643106 0.0131245894257284 -0.537617976990484 0.298869741195889 -0.108946338562177 0.111663635555010 -0.122220282792449 0.936993349549122 0.284983615277316 0.136730452116829 0.36163345063957 -0.392061812022177 -0.136433788449202 1.13532107439383 1.28021184810462
ORF04431 -0.166815449882462 0.188273869345313 0.0119522985178009 0.047758216879788 -0.147733376545695 -0.165698784134516 -0.0886314700748614 -0.290965668605461 -0.541938462121854 0.406516283722163 -0.0660927518953403 -0.149128078573600 -0.610119798138889 0.295449145195861 -0.151691167826493 0.257792362049792 0.428730227622356 -0.102198090775301 0.752573390923095 0.142276934286357 -0.326982492410243 -0.222702486665481 0.112151313608033 -0.149726531286611 -0.0964332642102283 -0.0328083634066292 1.05167321102724 -0.290232197184522 0.212037756192387 0.14687738237432 -0.0237297487502240 -0.0285423152998493 -0.128412192380796 0.456673609708592 0 0.110842623149109 0.354483489359603 -0.117341668362587 0.525511066355783 0.739364239135802
ORF08434 0.522000011748447 -0.138816341185507 0.70152386944165 -0.324082516730452 -0.514143817220327 -0.404191265349549 0.191200085608364 -0.7531084275667 -0.537475824776989 0.244243976419255 0.128595831121346 -0.124054274313897 -0.589050439123688 -0.0729705748199363 0.105382414007784 -0.544643553131771 0.889942344411479 -0.282904255671227 1.18355019047142 0.804209290964577 0.342563851380117 0 1.80984623905627 0.634064378766030 0.254555724676214 0.0944523571987842 1.58356462630492 -0.688365115439938 0.357693750960646 -0.406300893700227 0.382934810061856 0.141182736146343 -0.735728914858 0.0618451558724932 0.0300680315762049 -1.31860415548211 0.0267265629527008 -1.16650381760128 0.719121770667434 -0.89581852329575
ORFD0316 0.060914808106263 -0.0918300089490714 -0.164964967031278 0.0403783377617649 0.0129398837197422 -0.34567169951399 0.0202627711369153 -0.217126648486550 -0.229492246833486 0.0903043903369897 0.263747247580155 0.104323796837923 -0.581741309556833 0.017862127263653 0.556848209304177 0.863249447002765 0.0839940607825908 -0.234024108486883 0.126372040981504 -0.217023086755698 0.0414021806551765 0.0467567160800958 0.812035818062284 -0.318449680859546 -0.226613378990553 0.206435152668476 -0.22019077218634 -0.470313788788798 0.0728119263909202 -0.086402052233349 0.0434529846869515 0.830701632342317 -0.378081414353872 0.0379244560583920 -0.321255545772152 -0.267454180207177 -0.063386044958917 -0.0708600286135245 0 0.371872075072787
ORFD0398 1.08423061848255 -1.25301789626752 0.463122467238376 1.32635528884147 -0.636417422503636 -0.0229265330037042 0.382202011471686 -0.444626557445003 -0.182120479447237 0.0742651965662324 -0.52914497201718 0.703540619770036 -2.22246826928265 -0.81966057553486 -0.412154881185836 0.335586286797593 -0.92969101812152 0.609915989232309 -0.00759814199690773 0.776833925417454 -1.64743101862514 0.961140919642153 -1.54175914830738 -0.205433632215466 0.035892590570052 1.57990253992081 0.886483492443527 -1.08816571001518 0.544558504556716 1.09079930816396 -0.575505950601604 -0.0291543275151459 1.38124032305370 0.345109444655501 0.295725723374757 -0.913700244700067 -0.147315260661225 0.325974377655425 0.187658445819324 1.14126291935473
Rv0176 -0.0354328872711593 -0.698771754188391 1.73204394956076 0.136693791095242 0.344289268914807 0.821684011660428 0.125264720746604 0.0507834149591959 0.663060415070167 -0.325467921656848 -0.318631167646818 0.753373692204922 -0.954156262652244 0.753369423141983 -0.238054520973476 -0.471098036137776 -0.984231706259447 0.432478397604496 1.23091465294735 1.26002892400117 -0.579102927360904 -1.07758246486108 -0.0204692723464679 0.564683210862532 0.801719475680851 0.389908141509892 0.988606348756296 -0.997920922404268 1.01894370576631 0.575181141809221 -0.106961069058464 0.606447759925617 0.517802146681305 -0.252296301500541 0.522366675531472 0.286519257794182 -0.0844324293104794 0.591283234169724 1.23714420156373 0.638011630119041
Rv0250c 0.84667371694227 1.48681360817735 1.53075964414835 0.678322274016241 -0.331745560719583 -0.150717027966236 0.458551642415129 -0.873741800145962 -0.156518737786566 0.245016508757741 -0.100526182298021 0.730760789694023 -2.49555080206432 -0.541106996631127 -0.0529962484165052 1.06822759761053 2.32923222601394 0.591042539726404 -0.191671364467393 1.69430256969515 -1.22600571137829 -0.208075560110712 0.188948587972929 0.205187859142885 0.415264342336308 0.601876349048457 0.210710753776509 -1.12319564268931 2.39825821660644 0.504134475265407 -0.224504130330239 -0.131708499471609 0.863969864571829 -0.0867861671518697 0.781070030149224 -0.562711786239718 -0.0596024437186252 0 0.957326436391058 -0.0190915374551229
Rv0333 0.0151529891835319 1.08304117002029 1.19536272384310 -0.182256192784788 -1.09595226592218 -0.425288005545360 -0.660873253228279 -0.529330127022143 -0.207287582601124 0.878817040158402 -0.136208616234109 -0.225963895636994 -0.241950531986373 0.118468709936436 -0.240094867823104 -0.932876593403903 -0.464162672503211 1.18309107782534 1.55909948521375 1.07589176976937 -0.838640260591949 -0.824275771644396 -1.02715811249190 -1.23690963291452 -0.346789264632875 0.731304804920375 0.871910702332971 -0.20562650637092 2.06168899630290 -0.204556595237209 0.140669757666203 -0.696817584001502 1.10060791097410 0.265228969434287 -0.74163269911159 -0.149119076976254 0.894795239562844 0.0118089279275692 0.85902108944477 -0.7460323537078
Rv0424c -0.205072612513676 0.822359135573588 1.06766010804369 0.267991879080405 -0.508706773571299 0.370578688183683 -0.120312801385215 -0.349400107412907 0.984449928855412 -0.428628067291344 -0.337944800760823 0.245177171884298 -0.256331084281288 0.0339909999877465 -0.483340481575487 -0.847317335178473 0.105714243793571 0.371852128619848 -0.601994414396773 0.655261357644707 0.281323826665006 -0.3431596550359 -1.46576031595732 -0.196671881803876 -0.159640940175004 0.563591761071405 -0.400602206159291 -0.691621348406424 0.449849672982891 -0.786758207963495 -0.291869504295707 0.146278732960394 0.379563244735694 -0.526918766334775 0 0.861099171652618 0.0698535187141956 0.510901862222719 0.727226166020009 0.174600559676217
Rv0426c 0.293388282421162 0.793573185159356 0.0368315870665734 -0.126877119206589 -0.522003631405154 -0.0523495702220837 -0.567957201412271 -0.810085771794498 0.600762852815213 -0.352560483749105 -0.492449987603173 -0.309383421440984 -0.018948497248504 -1.06240979114786 -0.504174305997788 -0.460667897149725 1.11008661806184 0.047182429044735 0.265388719913161 0.109459358557220 0.118570168438611 -0.579239596572393 -1.05680702314229 -0.417766253249282 -0.457303917749137 0.465678286806033 0.89764904262263 -0.94099245603427 0.075189155308336 -0.607426232834226 -0.849380336022763 -0.281939129978079 0.642849423300254 -0.531175526925494 -0.921303284946577 0.54676454774121 0.580032182644021 -0.196559104903163 0.73263013144226 0.19776106486336
Rv0433 0.279950360042049 0.0561486569540569 0.310143928102521 -0.0396512046132839 0.62997443260446 0.0796105046234259 0.668662880052448 -0.0786146518767147 0.123004033833701 0.423873690892206 0.400471634668484 0.537614960022717 -1.67897848927685 0.0478174975123708 0.344106029839672 0.443937045345278 -0.555833743648157 0.341054342926674 -0.238256371010222 0.567467510132598 -0.590801340387955 -0.190740532264954 -0.695697878540455 0.103694201091698 0.216239551334876 -0.0547050027998261 -0.17311276967315 -1.46516214332828 0.124855846446566 0.308125679009226 0.0766252926386546 0.72289131616945 0.167848453215851 0.0348246701072234 0.849193878206693 0.207549637451718 -0.132988598506337 -0.338120973495858 0.823412887459279 0.378017990461738
Rv0557 -0.687378376972465 -1.26089140121197 1.80826533627085 -0.096300767920877 -0.389648652675214 0.387880436983916 -0.291167728559665 0.00106966715160839 0.837595173127393 -0.909627876954288 -0.232855630308702 -0.297384469988468 -0.188114267410308 -0.370685926480932 0.1750165367239 0.136831960145146 0.353676882546591 0 1.05103250853515 1.12870219368933 0.823491972360635 0.89326255633341 -0.1885711344394 0.192783036210098 -0.00108580075662015 0.246786444500483 0.221044901378903 0.455933481504726 1.75965559750201 -0.157907207462039 -0.154119476768324 -0.446846709640691 0.887235978819926 -0.378469724265636 -0.00113648102801159 0.159511822431073 -0.197687627941325 0.0387315493348708 1.67301276251263 -0.864130644446549
Rv0610c -0.0576289140904737 0.924919508916234 0.800674131704906 -0.0263722478036062 -0.566830807179357 -0.506462576577083 0.00978338276368518 -0.50481853397334 0.65736204610085 -0.0927143277433608 0.553431387310865 0.264234999496611 -1.15826336901308 0.0204808755978681 0.255742494102003 -0.028039871469871 0.352480140103984 -0.180348455030612 0.160286035660369 0.62066652925977 0.142069779786747 -0.819903374534112 0.629731723935083 -0.317271050422778 -0.526973605506296 -0.594003678200295 -0.338538230955890 -0.529379561095698 0.777033362227062 -0.550454830912477 -0.142278838139311 0.321682071871275 0.667533132054412 0.348589422298364 -0.124008585354427 -0.0440713222412353 0.343756956590916 0.0718065545251925 0.265520144652529 0.142069779786747
Rv0734 0.757389177885118 -0.230321951685419 0.447001383119116 0.661104626413355 0 0.0348223872671113 0.780216156864694 0.249708331889982 -0.0356514817981824 0.403323843237410 -0.148335551706357 0.293418964469699 -0.0878769519046662 0.622531763518326 -0.224237379649828 -0.139609696109510 0.0865517041607643 0.388902875845244 -0.196668372672117 0.611192317692386 0.263627320345019 -0.571932222525678 -0.72792341491159 0.969383365689021 0.500488607621888 0.383976477767534 0.141100886556267 -0.447434025366215 0.168128662604841 1.10202401561479 0.0237500344567126 1.25755229312899 -0.258208556949813 0.146030551033025 0.97163726794791 -0.431791836994206 -0.439719943040702 0.147619160275110 1.03671466406069 -0.0162463500435309
Rv1842c 0.0246711219065105 0.45492679201892 1.392416721729 0.56034972215516 -0.174168597863907 0.298035199325658 0.51691607406946 0.835371797039724 -0.146870079081953 -0.375465144998125 -0.394243307060618 0.225260770182777 -0.861130779822226 1.11163635416467 0.349496406247277 -0.204066160221608 1.09456793597425 0.326341728821513 -0.209491821069013 1.29665233572803 -0.256942747530257 0 -1.54258486458501 -0.0141936095170581 0.330196344368744 0.769058378567241 -0.341159307097703 1.96151790661865 1.75338328342305 0.743014688461814 -0.821586212416304 0.923615016245804 -0.719115053341212 -0.892144073280616 0.429770379908261 0.535809876546684 -0.699263529324985 -0.111096421802414 0.529722092022045 -0.165671452764671
Rv1882c 0.163604662072624 -1.10533977480858 -0.202235293900607 0 0.0075692062557796 0.611291409591157 0.167989682820668 -0.395172077304829 0.904146733410516 -0.733488025507123 -0.967686726307204 0.0219347573029624 0.209830145657623 -0.598619396775127 -0.225604248422441 0.231901540519734 -1.47561757552313 0.365900433592976 0.737003764955753 -0.0438559039634842 -0.343317047493728 0.616021813921221 -0.273582771174544 0.154248199993056 0.115709784232239 0.952812555847473 -0.0342353093314309 -0.330052512337739 -0.0184868633953675 0.761042379699356 -0.784961184541423 -0.482713553340416 0.192766233772767 -0.342343166632515 0.446273380347044 -0.449862177253702 0.0414945921716521 -0.66541799068115 0.124706065215160 0.0739841862058113
Rv1967 0.428569572447619 0.542755027524788 1.82135042060813 0.0824120019909978 -0.520673380756325 0.562695713597433 0.915698377016808 0.396580427601635 0.0554632183784369 0.522708324393791 -0.85114312514305 1.19717296221592 -0.217916801632911 -0.404752793389313 -0.626251618713278 -0.31525275425689 -0.434054048230481 0.0913528797869205 1.18174638342886 1.46386027699906 -1.33319315081901 -0.223592388027283 -1.53502080179032 -0.107579524577964 0.610144388277143 0.899131946114506 0.0911002691572891 -1.74677918704677 1.40993364962577 1.06565992293962 -0.533731778315795 -0.197905275400593 1.05019278004684 0.740876634896809 0.699192519896645 -0.307193823793551 0.441473254681481 0.552514289317506 1.63289133979818 0.970982316291417
Rv2084 0.405735134792313 0.241371719172756 0.759353434479378 -0.0642479847103798 -0.44262149220245 -0.390415099641037 0.156561307118837 0.081718851925369 -0.368726498380034 0.0888356450483582 -0.519994423198385 0.116413014055536 -1.30163076489418 1.48601247348285 -0.489101655603858 0.0409604893596466 0.401973641160226 0.420763024697122 -0.47457840268546 0.967863505011128 0.289455903955292 -1.64564875290791 -1.46493538794233 0.328280085511208 0.491752785999781 -0.0318189415093424 0.081385322769541 -1.73815074929326 0.217478866599297 0.0492974191882454 -0.153634219232091 0.757868397298342 0.220612759071154 0.0574810556498276 0.1755187577496 -0.265682831116823 0.279828957957489 0.181031520294526 0.210261244026386 -0.396757582092798
Rv2406c 0.465448028440736 -0.0997818097403657 1.05925562377822 0.300998928234118 -0.825290387488212 0.0121166100995026 -0.451201374273920 -0.213316949292333 0.504505210547886 -0.5702066056437 -0.140774329497725 0.082834410482772 -1.44219190102786 -0.920289658334806 0.0743812024774844 0.0381314211965087 -0.151277131779131 -0.203611788730972 3.30554094376998 0.746535090965391 0.191822481118999 -2.10993549691200 0 -1.04109396364370 -1.40985656967296 0.773163271834075 1.95983038546329 -1.18316407865788 0.421209914781495 0.347941581223572 -0.244678095709265 0.186585719511869 0.0391892668178618 -0.88568626295393 -0.415464121884232 0.232683468483785 -0.700754492997742 -0.59960030921204 0.612541421069405 1.16747722081370
Rv3148 0.522911182320607 -0.597297931413318 0.69904827390528 0.0443255467999793 -0.332839661763716 0.238014130665533 0.305861187452449 -0.5940600940535 -0.0289268757105917 0.704075402798257 -0.331483337451358 0.448860300588926 -1.24272947177551 0.791532955994163 -0.416380412167191 -0.131638943053301 -0.201514870709570 0.221397075066846 -0.585074877382762 0.625092221585366 0.394177080031799 -0.36212082272911 -1.68529389218482 0.373541712930342 0.618504251999067 0.306571523458509 0.692010138179454 -0.588364038849376 0.407326529421703 0.534378129482699 -0.00683949169907001 0.643567572241422 -0.158954734780166 0.46856059034327 0.765170889365062 -0.635293436166316 0.145090726375366 -0.114309741936951 0.232792519622487 0.491820144182288
Rv3461c 0.507773395664182 0.536725176274592 -0.0367705172984538 -0.223431333716562 0.210942734035350 0.151763091627929 0.667409687921362 0.279101829074426 0.0727675646626212 -0.380802083633023 -0.372943911944814 0.441412302615824 -0.894559870546582 -1.00427462510327 -0.272295458096974 0.917450052059335 0.69097278296413 0.362680219161006 0 0.0441641465821438 -0.326848540746531 -0.208887617108506 -0.607702140203462 0.406395062262351 0.632484932288567 -0.195164329392591 0.334709895063784 -1.04566532172203 0.175190245655049 0.119218240468813 -0.359373324645259 -0.0445340045076763 -0.0106750020492096 -0.357151021027095 0.433588674343317 0.288258265480844 -0.269040894806788 -0.0122797529322994 0.64156946227688 0.182452572516375
Rv3462c 0.748160414815546 0.89572609660806 -0.0762547591270801 0.151147486552489 -0.174986255323086 0.22599466541709 -0.0273556701022697 0.329724964235491 -0.110579837127281 -0.283815192860671 -0.449406392036736 0.363606423390449 -1.10961627753759 -0.371138934557267 -0.225263567669718 0.548249937129868 0.470565307056473 0.0938874261345502 0.301674650152014 0.482578702981652 -0.69787351735259 -0.143731072799208 -0.134752821871220 0.114754973915649 0.303893948784355 -0.424648751879463 0.490955061427187 -0.931692560056048 0.476759378208616 0.127108930650066 -0.170029509095124 0.190919176375431 -0.0155838939405888 -0.141130005549842 0.254402957122783 -0.0678377431100576 -0.187785658910007 0.138842720943178 0.456399397735399 0.414553198459764
Rv3780 0.00430248628600289 -1.18266508598775 -0.199496226417030 0.312087785205141 0.98784174927327 0.195633475300069 0.306883874168877 -0.447242785522704 0.300148599651227 0.471261652676407 -0.228986385137370 0.389534747852600 -0.771753889201544 -0.437628468585845 -0.171870355214493 -0.303613582402907 0.943918298182488 0.362304785104525 -0.697242268909184 0.0582793823679831 -0.626127906977068 0.514529284283725 -0.437988478895391 0.60860766401607 -0.0561255235310052 -0.64053586226141 -0.446509046350711 -0.740222264997482 0.45504617012253 0.0874768806998757 0.216032539232700 0.479197694326748 0.50695959156876 0.11756248209304 0.153196733657906 0.344815388049092 0.186287770540212 0.945407677442889 0 1.24601937249421
Rv3898c 0.0655662014102313 -0.664495662526533 0.19291168736523 -0.297484113991543 0.183083031950283 -0.43286406555441 -0.0249409292618596 0.181447258318259 -0.487026979965584 -0.609645884964109 0.0890442157276607 0.115906444170692 -0.255917693299213 -0.0770395758717125 -0.165362948341959 -0.119478610892869 0.298532726824809 0.540764777579774 -0.699387903218587 0.143298437431567 -0.49376989303964 0.236655528580486 -1.27836426147496 0.422873582194924 0.164430807557385 0.284260687743964 0.0607669564281794 -0.727489304827052 0.696375697731511 0.285031561687865 0.0831004499978723 -0.1473433083631 0.268634365362018 -0.32991814789686 -0.0147501823430024 -0.00280995871576487 -0.391058952137348 -0.459596443598715 0.464886337364723 -0.83919565330376
[+] Show/hide bicluster #53 motif PSSM #1. bicluster 53 motif PSSM #1 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0.6 0.4 0 0
2 1 0 0 0
3 0 0 1 0
4 0.4 0.2 0.4 0
5 0 0 0 1
6 0 1 0 0
7 0.8 0 0 0.2
8 0 0.8 0.2 0
9 0 0.2 0.6 0.2
10 0 0 0.4 0.6
11 0 0.2 0 0.8
12 0 0 1 0
13 0.8 0 0 0.2
14 0.4 0.6 0 0
15 0 0 1 0 [+] Show/hide bicluster #53 motif PSSM #2. bicluster 53 motif PSSM #2 Mycobacterium tuberculosis H37Rv 10x4
POSITION A C G T
1 0.727273 0.181818 0 0.090909
2 1 0 0 0
3 0.636364 0.181818 0.181818 0
4 0.727273 0 0.272727 0
5 0.090909 0.909091 0 0
6 0 0.545455 0.454545 0
7 0.090909 0 0.909091 0
8 0.909091 0 0 0.090909
9 0 0.454545 0 0.545455
10 0.181818 0 0.818182 0 |