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[+] Show/hide bicluster #49 rows and columns.
bicluster 49
Mycobacterium tuberculosis H37Rv
22x36
[+] Show/hide bicluster #49 rows (genes).
bicluster 49 genes
Mycobacterium tuberculosis H37Rv
22
[+] Show/hide bicluster #49 rows (short gene names).
bicluster 49 short names
Mycobacterium tuberculosis H37Rv
22
short_name
[+] Show/hide bicluster #49 rows (long gene names).
bicluster 49 long names
Mycobacterium tuberculosis H37Rv
22
long_name
[+] Show/hide bicluster #49 rows (NCBI RefSeq gene IDs).
bicluster 49 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
34
[+] Show/hide bicluster #49 gene upstream sequences.
bicluster 49 upstream sequences
Mycobacterium tuberculosis H37Rv
21
upstream
[+] Show/hide bicluster #49 columns (arrays; conditions).
bicluster 49 arrays
Mycobacterium tuberculosis H37Rv
36
[+] Show/hide bicluster #49 ratios.
bicluster 49 ratios
Mycobacterium tuberculosis H37Rv
22x36
GENES Amikacin Amp Antimycin Ascididemin_Natural_product BZA Cap Cephalexin Cerulenin Clotrimazole Dipyridyl Econazole GSNO_CFZ H2O2 INH Min_med__succinate_ Mtm Nam NaN3 Nigericin PA_1 PA_21 Palmitate pH5_6 Procept_6776 PZA Rif Rifp Rox Succinate Tet TLM Valinomycin X_111891 X_111895 X_121940 X_124196
ORFD0093 1.96593846919242 -0.117562943070917 -0.260460147034217 -0.105969104702080 -0.218126670889602 2.5811994939328 0.299772721697428 0.0158558892574555 -0.374498663506347 -0.171564403679410 -0.797509871912331 0.2484798885806 0.275016441831238 0.133429173934918 -0.888254967976762 -0.265288835878043 -0.0626070068243691 0.2484798885806 0.411592862961757 -0.088377046508433 0.269432354990200 0.193673148814514 -0.207514089330050 0.865950299356515 0.672827666748866 -0.889116555501458 0.343720792882049 2.73857421882632 -0.133716508487692 3.57683516275163 0 4.21677937302947 -0.130133866623758 -0.297406721942507 2.0113900300253 -0.258980420445175
Rv0367c 1.79307437287663 -0.270101160442373 -0.158793913161397 0.345747215953703 -0.590421602026129 1.46060480640681 -0.226157920570283 -0.0264455684645232 -0.509683650703562 -0.26112909933031 -0.592307698398207 -0.462836903472581 0.244138941879488 0.582132454524057 -0.458058555581723 -0.146943001018038 0.105042713325931 -0.329720244785406 0.144058355405759 -0.34281597882621 -0.112001639736445 -0.203513636374704 -0.363461665186145 2.61782906943887 0.299515522273586 0.360026681469195 0.116692252807816 3.04524476220079 -0.21693245774638 3.08464775748835 0.133751737645642 4.13928650963926 -0.354342970927162 -0.231199122990965 1.65649492122858 -0.281705293421613
Rv0477 1.00925380391652 -0.607990939262955 -0.240290700324867 0.396492158792674 -0.937793919283148 0.946204137354518 -0.138297580662172 -0.264355597004032 -0.742034384258589 0.0270692749114547 -0.31406286931507 0.178403101676744 -1.01294037719844 -0.175760095805054 0.0698427664686075 -0.198509951873817 0.298179819048194 0.178403101676744 0.8720405443824 -0.408596099513192 -0.189719413552378 -0.860667316518172 -0.387409737480627 1.08842622601122 0 -0.171957971650039 -0.184222083508725 4.37017948309039 -0.649764927067784 2.27195294370155 -0.243521674497317 4.11345356914851 -0.339245376363478 0.475138864771993 0.250652674988953 0.14926708494666
Rv0627 1.17793373244947 -0.330218122082224 0.229566785047299 -0.235403264243585 -0.609451806803333 1.26525743265557 -0.154138072129694 -0.177265663332187 -0.209320722865144 0.168735576228015 -0.267419967210760 0.29138384038562 -1.24903283654736 0.453252382875624 -1.89903683829214 -1.15082232658914 -1.02244256878118 -0.180805090617361 -0.183596905947621 0.608690029259997 0.0544358703972792 -0.791750507917393 -1.00572066586068 0.7679997828403 -0.309526043784933 -0.0851398350382904 -0.202990686157861 2.73885798117797 -0.00438871109350032 3.05952483039647 0.13047602856706 3.48634047086574 0.0696296909657688 0.0915927146961932 1.27960531121205 0.000429915197427558
Rv1955 2.76375851199015 -0.223263770837716 -0.3064672935572 -0.0103844549131177 -0.497088913896848 2.04579154150703 -0.172111634116059 -0.0761885545403291 -0.120021025697010 0.112352814721782 -0.0429499595032932 0.234941553420908 -0.196629954226559 -0.553055207753223 0.544337333503096 0.0998255580102767 -0.284825311826915 -0.138579380118356 1.06315781675021 -0.214241933037635 -0.232614835738955 -0.206124467531264 -0.388794410691552 0.946859748098793 -0.197845985228632 -0.313679091640086 -0.375640022533943 2.37373991289608 -0.720806081337825 2.43722191087130 -0.184309327163078 3.86425274314246 -0.203828229067050 0.378098510084838 0.302963647993699 -0.0514133247765268
Rv1956 3.10344720128133 0.0733895946772036 0.0598269304511162 -0.317547914372665 0.189139572692978 2.11623506097561 0.109905974842301 0.111062283112694 -0.382941499183099 -0.429654057627591 -0.666281330241156 -0.312781898395057 0.189139572692978 0 -0.383745907916986 0.189139572692978 0.189139572692978 -0.409977458632559 1.00712061422853 -0.211368244253428 0.105541220355074 -0.322638052535527 0.189139572692978 -0.166291001916542 0.189139572692978 -0.261511792018923 -0.683044918444871 2.98577964661473 -0.619832830321359 2.46643612710996 0.0191843978103800 3.50261874401965 -0.0224422740713178 -0.183281809522871 -0.0386518709385892 0.0881701334355692
Rv2104c 2.22230129086982 -0.262757414437961 -0.378122631028502 -0.334952106433955 0.380635258831766 2.24266872782624 -0.278045377661104 0.511279933541769 0.0219988847928226 -0.436729118694278 0.255202828644703 -0.00300180344112800 0.117352678033325 0.822213349908207 -1.07184391401338 -0.154703138679283 0.936750627141538 -0.25207271668546 0 -0.152471487121337 -0.360861635313851 -0.125984498241001 -0.78993293089546 0.889756036867177 1.93739029838362 -0.844425320504157 0.153157108448582 3.05217989983505 0.100915908990757 2.2333456338457 -0.0482989564256679 4.75401025957943 -0.1208511858738 -0.317655322079549 1.68205211534336 -0.252347992314249
Rv2254c 1.07512814346513 -0.400109092842498 0.200091367837444 0.211063129784711 -0.398932929146238 2.83650760799431 0.525440381222027 -0.0412830691132588 -0.309454452119815 0.195761308609279 0.0740883328586343 0.210784967081762 -0.0769509628714946 -0.0526693348341656 -1.23786585725441 -0.665989158370179 -0.244336689924637 0.160807342411811 0 -0.0549010686205013 -0.131297983553410 -0.501977141996353 -0.325326118285494 0.471546953161763 -0.167265245608384 -0.080074364662718 -0.372419227296349 4.97558579963354 0.393156434960813 3.42430537956297 0.0414058634447287 4.13730685293509 -0.154445166042494 -0.244251853381725 1.48781853954152 -0.288743742887898
Rv2255c 1.82759487228917 -0.393003553843841 -0.53458364433078 -0.174718265813967 -0.635136047789518 2.47675583334813 0.522261075441312 0.0182113922609341 0.292537476075463 -0.09239574537707 -0.107905731774376 -0.715448828673206 -0.162614674267153 0.226987751304274 0.0419169870018917 -0.830658965739782 -0.680589947265891 -0.697201631153276 -0.519084722049457 -0.514485512926862 -0.335276731920052 -0.0743277417044765 -0.503460419661624 0.557837576792414 -0.47305867316886 -0.37506582778781 0.415274401165296 4.31671752193381 -0.0462729202940262 3.32241095675375 -0.0992789523515714 3.64212291718485 -0.0996322319636393 -0.211053087613683 1.13635982012118 -0.271540619877886
Rv2432c 2.18485549009297 -0.654117067215088 0.0399519028644836 -0.315655025351624 -0.32027380298287 3.06852925425051 0.11051320732236 0.921168366136793 0.725149962141379 -0.457793791713357 0.447503409014421 -0.174343547872986 0.249906038008309 0.405119841730394 -1.35665062237574 0 -0.282680902216251 0.187859960723721 0.262841754786309 0.670888652029815 0.634901047184124 0.46963955641669 -0.0133426992130142 1.30732702467945 -0.127337865177856 -1.91215733668380 0.5479123743142 2.72733012324481 0.084200562146306 2.33951079785953 0.149184197430354 2.60055448977315 0.128589520304024 -0.152253662419915 1.01331538495444 -0.0445581006757349
Rv2887 1.32745038374553 -0.23360778911816 0.280986579868349 -0.347914547177337 -0.295230851453363 1.29827632486674 -0.235110571309680 0.291012194099869 -0.280607076601359 -0.173481228888397 -0.718579070688783 -1.30457591828475 0.236911652825106 0.9391137754359 -2.26107559027899 0 -0.306998988256536 0.144587742861411 0.511380830356773 1.07824489897543 -0.095483868928833 -0.993855452509146 -0.192324334130435 1.20472098913199 0.566264489550633 -0.132750084361774 0.554464864167146 1.84099135286851 -0.743396577152515 2.86959660747211 1.41729769554470 4.76620607512497 0.049273986598102 -0.43726011917063 2.14462077118364 -0.0201935012401408
Rv2913c 0.935393525169648 -0.294503642300615 0.0077521331431923 0.0271379238943999 -0.369844083353284 1.59942868785340 -0.293999506815844 0.377215055675288 -0.866329936104989 -0.423807755237828 0.0333250069804499 0.29307592004996 -0.367044249519595 0.164134069078676 -0.734816986103005 -0.493797495214748 -0.229051010718939 0.29307592004996 0.460117737724471 0.169612686843558 -0.347794752197434 -0.487409025578301 -0.726867835101876 -0.647925907130557 0.851692824227508 0.289117391931212 -0.253667842381673 1.60976151212768 -0.378792635834634 1.93859851956719 -0.059857678720283 4.25261702325269 0.0508631301294388 0.0275224546987955 -0.145589100366606 0.0488709733412864
Rv3188 2.44869479416249 -0.254348532530712 0.0485528453038279 0.257855836640572 0.716434607887973 2.33374546663757 -0.425501976123209 0.208779569344592 -0.496615742838057 -0.181754311670799 -0.448525581485855 -0.932159675298958 0.318491115356525 -0.742067972003253 -0.524017467790711 -0.251510697655476 0.647658425814285 -0.266119177952129 0 -0.177202148669051 -0.44661871328473 -0.368904992325197 -0.391681073446992 1.94847045194186 1.52931718912759 0.218544214637780 0.00299218015125826 3.10517083728834 -0.415852343496462 3.39000213066903 -0.0574542462477728 2.98437527832598 -0.459218890051457 -0.00590691276103664 0.719446615813638 -0.355133406156866
Rv3189 1.93597686748163 -0.275297287334902 -0.50587681524953 0.252677291135662 0.0986842049588055 1.75010986449211 -0.084488067077056 0.228476828840203 -0.100666688619458 -0.0503117755312754 0.266362561663530 -0.267767976869482 -0.247746081288637 -0.323688599018189 -0.232035519585619 -0.0689065350603927 0.311890839912735 0.308133802689670 0.203335507997636 -0.266904112823818 -0.245348752340078 -0.169116367259649 -0.0449776300837579 1.35314821749970 0.630246767973222 -0.122293229000799 0.207177394280958 2.39506785841398 0.0668043811754794 3.46401198922637 -0.0902304716077783 2.47330641248536 -0.010491069384543 0.0341712226350306 0.727827370809955 -0.270889015607891
Rv3334 2.40957952931905 -0.387576463906937 -0.430167822340986 -0.0223159504922506 -0.0447251553347279 2.41164348493318 -0.145300467174037 -0.157739346808024 -0.428088525925027 -0.0729708801967155 -0.179594399520982 0.0546848569446987 -0.102806810125390 -0.646592005366762 0.0802650804695496 -0.418114529143012 0.391112288687850 -0.237516418861626 0.0410439812325562 -0.0634997555992079 -0.114973412287479 0.312211226043183 -0.322580712788199 0.355097868065012 1.71411399243635 -0.302237762814956 0.204205308418196 3.02958843803479 0.38707140437798 2.41335276631871 -0.275013833021640 2.92278123490607 -0.610315572530395 -0.0978081244195184 0.194052975804135 -0.182738540431278
Rv3340 1.40308902299117 0.00447124932281109 -0.395249193442058 -0.193472297559342 -0.030941694627459 2.07942113982111 0.156726901070949 0.0371486728550064 -0.139767995877395 -0.206037206715742 -0.459880422829285 -1.25027673350241 -0.0450881986380246 -0.501210899704881 -0.532491475458694 0.320230282787886 0.213673376807673 0.131962686997253 0.166703981572312 -0.365573390628373 -0.355247117803314 -0.0838200150165226 -0.0206987791223328 0 0.153014573780008 -0.322099478026995 -0.231247151256084 1.59945196767088 0.250884333583585 1.25530025643558 -0.116599836431924 3.9162477109818 -0.151706247763452 -0.162686313286850 1.77507446728042 -0.248277967323551
Rv3357 1.08597049433541 -0.40270692698603 0.205711130802486 -0.209884748575279 0.396823482184142 1.67908223491774 -0.180901315637250 0.295576821232019 -0.414134082994794 -0.0591605398716457 -0.421936851065971 0.078090998901505 -0.354743475389701 -0.564430126087736 -0.997574669876147 -0.519625744960078 0.181285117231508 -1.49644658633814 -0.164458850442168 0.530079239195665 0.115540871578267 -0.673767017287974 -0.56969166373125 -0.624213127724669 -0.215820699567492 0.536960898184774 -0.173312269706799 2.08940465543876 -0.561982798889967 2.78435718728513 0.244276508522474 4.79214770510443 -0.0556717629648626 -0.161967673004923 0.196775726118694 -0.287625034025880
Rv3426 0.74042354706172 0.37110104077285 -0.990076079408762 -0.155412060468406 0.289962961534903 1.28110061869131 -0.138542280873070 0.135828307567417 -1.00615286809606 -0.218746411237349 -0.829338107954357 0.0222859074732403 0 0.387843337967743 -1.83429236990992 -0.133229907883600 -0.182485884036159 0.0150944171038015 0.210560222696056 -0.284118840390019 -0.505393454470016 -0.884315664532248 -0.561151881871258 2.34502962674801 0.234576329587452 -1.1543777615655 0.593682314039597 2.68551797732333 -0.717653572170395 1.16212912661081 -0.0116398928167106 3.73421504883685 0.059441676115669 -0.0813373660866315 0.501739329976925 -0.0537772767971714
Rv3429 1.65942470921483 -0.114800600790832 -0.814916386027015 -0.215451168487226 0.593904972141709 1.05646146357252 -0.052586390759663 0.0801703300343946 -0.389583277955001 -0.421970559722389 -0.554714323587991 -0.366666904686749 0.077316246248415 0.96812922758174 -1.10418709713483 -0.42566052713249 0.596250005538696 0.446656666792987 -0.0507327871440314 -0.331775711140957 -0.43907949731348 -0.484124154659517 -0.825018065413572 3.10026724014684 0.806640352378128 -0.665578850466535 0.352463552570920 2.60870214714541 -0.0878772445460616 1.57818414758769 0.079879893109305 3.11445090088978 0 -0.317901047798368 2.0368564603173 -0.0935728155995075
Rv3681c 2.43510437366225 -0.252854630779144 0.471789588923187 0.249018168379721 0.397391209519781 1.91579759304768 -0.530791169301294 -0.0845525214597846 -0.483811036230671 0.0882764375790106 -0.490683194721514 0.125332674492894 -0.272084636449352 0.1420421422047 -0.138138905532415 -0.510673862161508 -0.105324893872832 -0.859390698866504 0.0643818411372769 0.137062814850942 -0.266002291012515 -0.491518761722087 0.0342040370251724 0.81686833668841 1.42716753563936 -0.652721598388202 -0.981846512093487 3.08863550264732 -0.433564149638463 3.89589351183153 -0.248867647527924 3.06408058765683 -0.173553280134494 0.32548203745784 1.50121669684153 0.485941082315888
Rv3872 2.2360404933703 0.938691773691693 -0.355318495168078 -0.242268661851932 -0.0569659348334056 3.15559692682664 0.149480217339700 0.893296277169128 -0.264345841147214 -0.173644975361649 -0.221264222818814 -0.0341945401630197 0.303208736878975 1.26282092632586 0.156284680389835 0.307441889160171 0.544274965364236 -0.0468798124016157 0.8537889642291 -0.880508122530045 -0.251648274917408 -0.292481093179077 -0.837860750178401 1.37375652026003 0.467554926415489 -0.440824235370471 -0.480157791900961 2.04365352347189 -0.755313733517434 3.37528953342459 0.36920347388807 3.14659022082441 -0.217724071518472 -0.149136591782612 1.20579540614824 -0.306139511346811
Rv3873 1.07542111254102 0.359855431137222 -0.682938726311629 -0.691669765804841 1.01195585449903 1.46931711950447 -0.187253184232764 0.491564143452503 -0.497869056415445 -1.14921489821940 -0.180147350508519 0.089840952041576 -1.17838298138801 1.1542352369709 0.0979985615479233 -0.815086697023266 0.659555659709818 -0.662393501559233 0.57063421926243 -0.887235875628133 -0.555657329682666 -0.698279483080532 -1.30875933337252 0.984100436380088 1.05165388173570 -1.83214643358880 -0.065401366988959 3.95300160618790 -0.895094884186464 1.44084432649648 0.251044242944550 3.80385407692976 -0.477162409823542 -0.599676892720003 0.324968189041092 -0.272330808826189
[+] Show/hide bicluster #49 motif PSSM #1. bicluster 49 motif PSSM #1 Mycobacterium tuberculosis H37Rv 20x4
POSITION A C G T
1 0.125 0 0.75 0.125
2 0 0.375 0.25 0.375
3 0 0 0 1
4 0.125 0 0.125 0.75
5 0 0 0.625 0.375
6 0 0 1 0
7 0 0.375 0.25 0.375
8 0.125 0.125 0 0.75
9 0.125 0.125 0 0.75
10 0 0.375 0 0.625
11 0.125 0.75 0.125 0
12 0.375 0.25 0.375 0
13 0 0 1 0
14 0 1 0 0
15 0.125 0 0 0.875
16 0.375 0.125 0.375 0.125
17 0.125 0.25 0.25 0.375
18 0.75 0.125 0 0.125
19 0.625 0 0 0.375
20 0 0.875 0 0.125 [+] Show/hide bicluster #49 motif PSSM #2. bicluster 49 motif PSSM #2 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 0 1 0 0
2 0.8 0.2 0 0
3 1 0 0 0
4 0.2 0.4 0.4 0
5 0 0.6 0.2 0.2
6 0.4 0 0.6 0
7 0.6 0.4 0 0
8 0.6 0.4 0 0
9 0.4 0 0.6 0
10 0 0 1 0
11 0 0 1 0
12 1 0 0 0
13 0 0.2 0.8 0
14 0 0.8 0.2 0
15 0.6 0 0.4 0
16 0.8 0.2 0 0
17 1 0 0 0
18 0 0 0.6 0.4
19 1 0 0 0
20 0.8 0 0.2 0
21 0 0.4 0.4 0.2
22 0.6 0 0 0.4
23 0.8 0 0.2 0 |