|
[+] Show/hide bicluster #47 rows and columns.
bicluster 47
Mycobacterium tuberculosis H37Rv
25x38
[+] Show/hide bicluster #47 rows (genes).
bicluster 47 genes
Mycobacterium tuberculosis H37Rv
25
[+] Show/hide bicluster #47 rows (short gene names).
bicluster 47 short names
Mycobacterium tuberculosis H37Rv
25
short_name
[+] Show/hide bicluster #47 rows (long gene names).
bicluster 47 long names
Mycobacterium tuberculosis H37Rv
25
long_name
[+] Show/hide bicluster #47 rows (NCBI RefSeq gene IDs).
bicluster 47 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
44
[+] Show/hide bicluster #47 gene upstream sequences.
bicluster 47 upstream sequences
Mycobacterium tuberculosis H37Rv
24
upstream
[+] Show/hide bicluster #47 columns (arrays; conditions).
bicluster 47 arrays
Mycobacterium tuberculosis H37Rv
38
[+] Show/hide bicluster #47 ratios.
bicluster 47 ratios
Mycobacterium tuberculosis H37Rv
25x38
GENES Amikacin Amp Antimycin BZA Cap Cephalexin Clotrimazole DCCD DIPED Dipyridyl DNP Econazole EMB H2O2 KCN Levo Min_med__succinate_ Mtm Nam NaN3 Nigericin NRP_1 Oflox PA_1 PA_21 PA824 Procept_6778 Rif Rifp Rox SM Tet TRC Valinomycin Verapamil X_121940 X5CL_PZA ZnSO4
ORF00401 2.97015262502362 0.137259077115451 -0.233737045063137 -0.334410182741598 3.22139914277637 -0.124723176743651 -0.323762938861382 -0.450648783267412 -0.415962512234161 0.0598660541498795 -0.835672046879503 -0.388332737017997 0.0469546319464886 -0.117114310077750 -0.444064893299877 -0.331033592929190 0.225215479446904 0.385558715496535 -0.396038024070067 -0.158483582455159 1.15716033099495 1.06584804374627 0.339675112335912 -0.653494226804258 -0.62578793286303 -0.403882465436847 0.130015690292374 -1.42427530795221 -1.10470014719277 3.91329509623809 0.433567787517703 3.25972441738449 -0.408655191728483 1.07548231359983 -0.163855135904672 1.78285260815899 -0.339055044793456 0.812037138149992
Rv0263c 2.09302945187195 -0.0374756146635550 0.0744877024741755 -0.333906567406109 1.43866327285476 0.31869185698651 0.321944941911163 -0.306735149051477 -0.193109811474315 -0.245026220912403 0.219910764383256 0.545383789049168 -0.294788056281516 -0.850017658344056 -0.213356338635741 0.0859220106111625 1.65899064725796 -0.908326004974619 -0.610997832609273 -0.185716587054181 0.68615617834469 -0.0200213007419809 -0.592898269323953 -0.282039733594770 -0.332669056021178 -0.578192174065294 0.465260817915878 0.131483455801098 -0.0363158548679767 2.6164541532765 1.54626168936647 1.55882937118805 0.495479224796825 0.376469534970432 0.586365406393835 1.84049409159125 -0.110714336683351 0.692972423973592
Rv0264c 2.67380734146995 0 0.680774484239968 -0.306115191513372 3.48822012952587 0.0231650396120031 -0.243342346549419 -0.292217707691660 -0.371528268344767 -0.314732416392025 -0.532990827261219 0.078080794643508 -0.182704986156395 -0.134720979209706 -1.19919616947998 0.32235562738148 0.160976384235135 -0.209334657147363 -0.291012534509134 -0.460287401841139 1.56393355201308 0.0210580055228661 0.356254198356384 -0.475928592341141 -0.731032352703841 -0.382168582697985 0.0650351424209772 -0.289879937768854 -0.304992027440066 3.61459960711231 0.780973896819873 2.71418374389991 0.313913311416997 0.222884613692784 0.414294746088021 1.81668859054229 -0.497471055187785 0.240101987818621
Rv0520 1.46277245240859 -0.476387773039486 -0.793892750678443 -0.120843742719897 1.60170108029335 -0.255034582910980 -0.221491288680296 0 -0.099354789752412 -0.730971385289231 0 -0.289618072205220 -0.299659993107864 -0.187309936798831 0 -0.109960943289029 0 -0.275437770736 -0.228074524584801 0 2.10108208971505 1.30790217905439 -0.365747949974409 -0.351566204615577 -0.764653556115344 -1.07886178773949 -0.934929620974907 -0.0391111244647484 -0.153534433241787 3.13592520183618 -0.577632096297543 2.43246892512414 -0.347749950893171 0.919236971490369 0 2.30227433097754 -0.380283045634914 0
Rv0608 2.54840143019438 0.0321325378429247 -0.140680621968154 -0.988725500217619 2.32849215884843 0.140935373023259 -0.445001231612137 0 0.203927757386153 -0.181604439599802 0 -0.377890806323019 -0.295540753291251 -0.574315389022068 0 1.23225371915721 0 0.332817676720736 -0.365437154008399 0 1.12906217921610 1.17394971259842 1.63211173146949 0.420055796463436 0.184342926514557 -1.52523884483458 -0.595122062195609 -1.07141701956234 -1.07897846283013 2.59129769721665 0.693065326057925 3.82116671242851 -0.606018145201141 0.389695844207988 0.676596268844689 0.922791825213082 0.0811303615380583 0
Rv0610c 1.94958253000828 -0.0576289140904737 0.0498712858900861 0.800674131704906 3.48030330135293 -0.0263722478036062 -0.506462576577083 -0.685948454285179 -0.0363951584388181 -0.50481853397334 -1.36946596132497 0.65736204610085 -0.0927143277433608 0.0204808755978681 -1.77392988929703 -0.028039871469871 0.160286035660369 0.413637935524174 0.62066652925977 0.142069779786747 -0.0547616886032059 0.629731723935083 0.198149315046061 -0.317271050422778 -0.526973605506296 -0.640445189494313 0.0253185963201890 0 -0.700046463276715 4.60786308156034 1.28419896505453 2.84243812348127 -0.391218070278867 1.17925188791493 0.667533132054412 0.90992274770517 0.265520144652529 0.142069779786747
Rv0748 0.898385126748284 0.155996388651807 -0.65788192004503 0.785584524657644 3.24667010010863 -0.40824151476287 -0.379706188833041 0.60205463039735 -0.280280757263694 -0.308017828843254 1.58917880210221 0.0856117975847172 -0.185516389274247 -0.640727783630582 -1.22994860792708 0.575636468496202 -1.04185273203922 0 0.221209254593128 -0.156038657491559 2.08041721294368 2.05622431510580 0.200921669292827 0.124227943329784 -0.0590181741810208 -1.40362564549569 0.00810802023611282 -1.09384712584229 -0.174849697990298 4.60258950560197 0.707590452781087 2.25054969505186 0.438402335099731 -0.119733681786776 0.324444110267731 0.590069625233412 -0.161166211979951 -0.145865691673623
Rv0805 2.48924483544641 0.538615463258200 -0.674692433910576 -1.02257467333906 1.59867187876233 -0.609487467536995 -0.0350119337370035 0.164185835122082 -0.0472341452999398 -0.493635458424751 -1.25079063930755 -0.131705919558672 0.798453816827027 -0.174527762817603 -0.721835927704523 1.06684154130050 -0.0410992555913262 0.0877556030836594 -0.82343438496547 0.42338220558 3.08174177319374 2.27700652115216 0.833808056309049 -0.435315560630585 -0.272295165231755 -0.626421894272986 -0.533066648723639 -1.02252719607472 -0.642419793962749 2.76796306747449 1.66373189889104 1.43901631238039 -0.163734584507959 0.0372686502100583 0.0530816500022052 1.63375537275380 -0.619383293147292 -0.394686095235334
Rv0885 2.09203420946099 -0.243719416585748 -0.513705996045514 -0.182932395478970 2.12735943684792 0 -0.271437900071122 -0.0969571730418684 -0.158642869523751 -0.0968221265856552 -0.0554919578130976 -0.351531130295805 0.321151167733708 0.109280870790752 -0.291771914061891 -0.0160326112520309 1.11714129312326 -0.203992142201095 -0.303499568230149 -0.26338686852704 0.404426433306408 2.83223146919358 0.181720265059905 -0.807460125206965 -0.803160377285242 -0.337653231259423 -0.167990085876095 -0.00756153381786743 0.109736441476080 2.83157955798095 0.0932319615663681 2.22560989437884 0.334635647193043 1.17756852650437 -0.104878036986799 0.560578847116706 0.424014658139702 -1.00874829969738
Rv1009 2.23213338009296 -0.323293691226477 -0.070906654792547 -0.380718288614349 1.06499223234616 -0.0556210622492169 -0.347814355016867 0 -0.0900456073201319 0.285008944586524 0 -0.893001837092358 0.0319094399938978 -0.972860174616734 0 0.526015935482486 0 -0.130266357710125 -0.488780563078902 0 1.90284652460485 2.13626707206185 0.394447044961869 -0.346182584579867 -0.496421041396459 -1.44446342072661 -0.490498842837114 -0.34409154023527 0.557354093703058 2.11122910261465 0.561691690984788 2.53842137739348 -0.777522500878373 1.82202300316189 0 0.780823206667995 -0.112160557937443 0
Rv1031 1.18116150411677 0.0171234057852877 0.0200521866520925 -0.749320682411572 2.34315708374403 -0.339294040045656 -0.238614562535883 0 0.133712833840334 -0.631803198482596 0 -0.576601303660314 0.195166296601255 -0.245679685955462 0 0.087454433302139 0 -0.388480731405323 -0.239628839284091 0 1.58776744141468 0 0.236714177577391 -0.41424487236112 -0.0788761507231006 -0.742249854083718 -0.689228325983075 -0.0530286153270582 -0.391714044005438 2.84414663355068 0.129171211871537 2.73905901071169 -0.603664568887317 2.75455644716726 0 2.4447040943608 0.132814795411374 0
Rv1169c 3.44164178620056 -0.433265877754566 0.241075763377135 0.067836169736904 1.87257134204635 -0.297831898999567 -0.966626899957608 0.657782995648964 -0.0184148702403127 0.760908231022567 -0.945612289751485 0 0.394383775789137 0.0294868734470988 -0.77730763365536 0.109870963919628 1.69756581938002 -0.244583277469678 -0.354242754322752 0.248173935714094 1.23073988081591 2.10272206696101 0.476815820276907 -0.41187575655624 -0.449345813565257 -0.0169967761131437 0.394551113438831 -0.556726141341799 -0.210159112218318 2.79629311769329 1.97455810095887 2.78987625243458 0.793841899442206 2.32732997872841 -0.171905913925819 -0.181612304380729 -0.500844826701429 0.248173935714094
Rv1636 2.45437471356394 0.317315562609092 -0.658268139846467 -0.780411567916873 3.50694516775196 0.186786301190049 -0.116709257392969 -0.834163881750714 0.469316218553211 -0.0974361671571297 -1.83125063832172 -0.212811615058935 0.648412817056082 -0.314166704759997 -0.637511507828955 -0.473850121911541 -1.31718073477855 0.493789051770695 -0.478460092665215 0 1.18838235315800 0.644470620811247 -1.14459351411002 -0.853955942160184 -0.247233325171921 -0.520123790412731 -0.217511733604758 -1.48619444633922 -0.881054667545699 4.32366282061007 0.950675606244093 2.26423610785855 -0.6091577712172 -0.0703977900405774 0.146866285491109 -0.0772087793267688 -1.13761496706270 0.112251785130269
Rv1649 1.76949573305273 0.476470142099133 -0.360553694054547 0 1.5618769971521 -0.0967730612310862 -0.197198833471665 -0.776252757393186 -0.0929217024238574 0.0606781514383096 -0.455333862639799 -0.155143111378934 0.34111281497674 0.335755016565666 -2.06365025075478 -0.0804183737961603 -0.97417366565914 0.181040891935592 -0.301584801304965 -0.159255928137979 1.24932713592653 1.08194067826051 0.833854803358673 -0.0757531209942791 0.239282826239708 -1.47907095552641 -0.451320649071552 -0.75103700094209 0.386855081978119 2.37912487514989 1.81304504505911 3.95461697842349 -0.358769407603277 0.128052279377208 0.564862617067034 0.112528972777736 1.09780410815383 0.636777009581388
Rv1660 1.99726203896361 -0.117082388254255 -0.220872098975305 -0.352273484050593 3.44890936003403 -0.318143551348835 -0.0783664411472099 -0.524505687425997 -0.117922141070782 -0.204094274526204 -1.01493015798623 -0.0773608358880515 -0.36718126294959 0 -0.931465299058325 -0.137691436918182 1.80161491044066 0.317784227758681 0.0246622260917035 -0.312075013310333 1.42921979553590 2.15112698659557 0.0164309445119221 -1.06857056716503 -0.62979073197505 -0.783599883552176 -0.64573483167481 -0.104334033043419 -0.0788923182464175 2.53832687773337 0.345333257687982 2.77733881975341 -0.728164874610669 2.26482179209092 0.283102994087544 0.595074253983628 0.62239956312936 2.14868052312948
Rv1869c 2.11067192146765 0.130066741146743 -0.262936579571947 0.67876159259303 2.45640230485733 0.526397054248065 0.387823704770991 0.365226182263684 0.514872897118252 -0.097386483389870 -0.575560235044964 -0.520430753353525 -0.54495570663882 -0.621931090001947 1.09982334669741 -0.186928060246310 0.00306214320575498 -0.201795309679374 0.379660961873400 0.405605503758375 0.707900449826022 0.777627613018379 0.275034955957173 -0.36498943474452 -0.230149008692521 1.23532018462403 0.809609837213772 0.478242549564512 -0.820754891280532 3.36152824631397 1.10925195594537 2.8812746333848 -0.642646509978693 1.75552876726699 0.356570971702204 -0.128976855689029 1.47932361061305 1.36258106544180
Rv1891 2.00062962236884 0.378764108100173 0.0406659113085387 -0.204180736108532 1.97354024197772 0.0132138543438314 -0.130034671495523 0.436890594979929 0.076388563664649 0.108081051259420 0.896253741058313 -0.59886471428598 -0.411750662980318 -1.29232723451650 -0.614529393064921 1.32774042952422 1.98899955012078 -0.503278852806954 -0.447133659261632 -0.543302098072155 0.525321017783236 0.45971583078103 0.741110602609982 -0.103840503645472 0.0523498950369433 0.428218000751583 -0.653905854936466 -1.53711786112525 -0.0798592728989107 3.68414374897768 0.703346454841771 2.78469230047831 -1.07209636134850 0.701922768206636 0.8086907055159 0 -0.169838047359316 1.13032592067843
Rv1892 1.83895272111710 -0.0561979071042721 0.185444210736459 -0.145512598533425 2.59929136815703 0.524745348150087 0.239715236459377 0 0.605185361695865 0.268438936607859 0 0.575042024093359 -0.312962198268662 -1.34084567474095 0 0.915919247216932 0 -0.286667093844209 -0.151973934950413 0 1.46728538388653 0 -0.227810452033937 0.488268007321201 0.69432431630581 0.159946068586665 -0.621541263469534 -2.04688926038577 -0.49545466660594 4.04503473361573 0.376098561740565 2.84878560071591 -0.51105116494116 1.29542799371825 1.95347723917768 -0.530124402691494 -0.93245844661577 0
Rv2050 2.74675222410359 0.0727248170001105 -0.456011959961283 -0.133234212344684 2.31317950743915 0.122326361518119 -0.584443519121175 0.64371014343906 -0.225487807899079 -0.105402147607551 -0.598540429691044 -0.0220427923450090 0.80235583389527 -0.119279912111275 -0.776509462026369 -0.0589352634484965 0.00630647988914830 -0.203890904638143 -0.0717098430504741 -0.522748662661919 1.22176435569846 1.63855121612931 0.141012145526490 -0.864024465805006 -0.372856447592366 -1.39889048730465 -0.632265363724444 -0.590942557400821 0 3.32552884323392 1.74396586013205 2.24815218732054 -0.717359740039581 2.60152334981814 0.424440070273233 1.20001574959943 -0.82424257913337 0.596473827023693
Rv2182c 2.19598316714141 -0.181131484588684 -0.902618052256992 0.598360445151596 1.70050411594580 -0.232140834121298 -0.306253839958928 -0.518831086222621 -1.30437661862913 -1.06776005592941 0.748156445369122 -0.334584069495015 -0.773075396743612 -0.519455628305941 0.7540824684546 -0.415660795445613 1.27620018178907 -0.759676680995733 0.240587489890062 0.371277579460718 1.15044771828475 1.02985451723049 0.0478126792803289 -0.954373705684325 -1.25168969111387 0.298686352528299 -0.0617934506958671 -1.04336180473523 -1.38551863424458 4.12376310888797 -0.107326145184213 2.42376351314215 -0.0257871177680481 0 -0.716901637422581 0.861190363791153 0.303527046060166 0.79223213367306
Rv2225 2.20668937838521 0.0165091652520875 0.0356377440673596 -0.640986475206252 1.81821198350113 -0.178222747175278 -0.590324196903492 -1.08481188116275 -0.480862140060269 -0.652272738024632 -0.447194207027458 -0.165933398758931 0.268593805163481 -0.489517046386384 -2.17297673789364 0.0168820505626411 0.511048974953148 -0.332377593311928 -1.09878180894407 -0.73873294135903 0.236803326796603 -0.0216480090196356 -0.125705714509991 -0.814933307787055 -1.11615448788079 -1.46135703349064 -0.0854681939352422 -1.15897200468477 -0.872595413105682 3.78591202090538 1.23643465039042 3.24855408863382 -0.416114262090991 1.44692198801745 0.0577081908076674 1.12592014211048 -0.287800026006923 0.137889318290972
Rv2465c 1.39145870316085 0.143846037975553 -0.0840913773293925 0.0399821534542149 2.45923284072712 0.0278582797630984 -0.195942886557604 0.0809461013641622 -0.122396235292556 0.117686289125172 -1.0164564234811 -0.432817144321246 -0.0858580149006348 0.629276271095356 -0.0761336149342383 0 -0.620082789651095 0.129133146831759 0.136587874188611 0.120409884863374 0.124092008838540 0.0784157481630102 0.454833165617149 0.363052956597437 0.256297715707203 -0.589446603319616 -0.194278252566793 -0.068005424488377 0.187347203020952 2.93506331904971 0.783490645615691 2.73448690206155 -0.183168317291643 0.237732044672507 -0.181239277915524 0.144293773769142 0.376867765700299 0.0503315532157829
Rv2785c 1.39378939936941 0.660342010735645 0.183877303741859 0.534900649913415 1.82486817292805 -0.0529215077316601 -0.443211793213175 0.179432664148951 -0.576226153297307 0.0597049172852422 -2.21086447021715 -0.657985055435929 0.172206648259024 -0.78930547402739 -0.225544156091568 -0.121276226863802 1.59929489773406 0.163869825668283 -0.165027539219174 -1.12258484222729 1.07664179166647 1.32174830439464 0.261165308502998 0.282055741019482 0.303098667705566 -0.616439631519112 0.595216288802506 -0.329249371759708 -0.00784448270818782 3.90865236256544 1.36111448184691 3.32629844914614 -0.24114568937306 0.599572684325293 -0.100643353160110 0.00207314428649791 0.591287784267097 0.424597889734632
Rv3489 2.49197533957345 0.781667989094024 -0.278051312402026 -0.141319144321895 1.59724985118797 0.162954489172575 -0.428419750490887 -1.11090522610921 0.681718925367629 -0.533870469987928 0.407020816850498 -0.0406076487890771 1.76309120139825 -1.88105853457563 -0.842213621979883 -0.582395836302407 0.713533839982022 -0.251840434907353 -0.64721858181433 0.534918837778095 0.325338016909882 0.313795319073649 0.190367234312023 -0.46491367486433 -0.551031214149602 -0.184000610222530 0.173424019544599 -2.63422101958812 -1.13194963314541 1.89969149386181 1.22228250959554 2.36625319114317 -0.552886214853076 -0.227789801713036 0.0597230951277628 0.241539389079977 -1.28024159228943 -0.116796192687182
Rv3651 0.991072194120248 0.250767895902553 0.266141033405842 -0.74377825009201 2.55748396278089 -0.141836031688356 -0.310854540261397 0 0.163551201756231 -0.022896709000847 0 -0.492562096546389 0.509485015254759 -0.58108707175983 0 1.35939971307979 0 -0.071878345582423 -0.775003604368963 0 1.79993674688481 -0.145705675188939 1.04269283413885 0.147400222187856 0.256051129626335 -0.879465481740721 -0.991829634685256 -1.57551120699009 -0.250114499167655 2.61058139796509 1.09742412119357 2.75593108706312 -0.588912648666961 0.801901394486824 1.35902627637252 -0.042781237173976 0.452376135551822 0
[+] Show/hide bicluster #47 motif PSSM #1. bicluster 47 motif PSSM #1 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 1 0 0 0
2 0 0.875 0 0.125
3 0 0 0.875 0.125
4 0 0 1 0
5 0 0 0 1
6 1 0 0 0
7 0.125 0.5 0.375 0
8 0 1 0 0
9 0.125 0.25 0.625 0
10 0.375 0.5 0.125 0
11 0.125 0 0 0.875 [+] Show/hide bicluster #47 motif PSSM #2. bicluster 47 motif PSSM #2 Mycobacterium tuberculosis H37Rv 22x4
POSITION A C G T
1 0.125 0 0 0.875
2 0.125 0.75 0.125 0
3 0.375 0.25 0 0.375
4 0 0.75 0.125 0.125
5 0 0 0.5 0.5
6 0.125 0.875 0 0
7 0 1 0 0
8 0.5 0.125 0.125 0.25
9 0 0.75 0 0.25
10 0.125 0.25 0.375 0.25
11 0.625 0 0.375 0
12 0.25 0.375 0 0.375
13 0 0.25 0.375 0.375
14 0 0.125 0.875 0
15 0 0 0.125 0.875
16 0.375 0 0.625 0
17 0.25 0 0.375 0.375
18 0 0.125 0 0.875
19 0 1 0 0
20 0.125 0 0.75 0.125
21 0 0.25 0.75 0
22 0.5 0 0.5 0 |