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[+] Show/hide bicluster #44 rows and columns.
bicluster 44
Mycobacterium tuberculosis H37Rv
21x38
[+] Show/hide bicluster #44 rows (genes).
bicluster 44 genes
Mycobacterium tuberculosis H37Rv
21
[+] Show/hide bicluster #44 rows (short gene names).
bicluster 44 short names
Mycobacterium tuberculosis H37Rv
21
short_name
[+] Show/hide bicluster #44 rows (long gene names).
bicluster 44 long names
Mycobacterium tuberculosis H37Rv
21
long_name
[+] Show/hide bicluster #44 rows (NCBI RefSeq gene IDs).
bicluster 44 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
40
[+] Show/hide bicluster #44 gene upstream sequences.
bicluster 44 upstream sequences
Mycobacterium tuberculosis H37Rv
21
upstream
[+] Show/hide bicluster #44 columns (arrays; conditions).
bicluster 44 arrays
Mycobacterium tuberculosis H37Rv
38
[+] Show/hide bicluster #44 ratios.
bicluster 44 ratios
Mycobacterium tuberculosis H37Rv
21x38
GENES Amikacin Amp ARP4 BZA Clofazimine DCCD DIPED DTT EMB GSNO_CFZ GSNO_CPZ GSNO_KCN GSNO_menadione H2O2 KCN Levo menadione Mtm Nam NRP_1 Oflox PA_21 PA824 pH4_8 pH5_2 pH5_6 Procept_6776 Procept_6778 PZA Rif starvation TRC TRZ Valinomycin Verapamil X_109 X_121940 X5CL_PZA
Rv0200 -0.556860612740173 0.511325452583558 -0.142156782390014 -0.152366172690923 -0.818696719018169 -2.75094442925377 0.83400637407747 -0.482739958503244 1.05921438060741 0.308712457194478 -0.706232267936513 0.0535912210413007 -1.27061708784842 2.11523347591855 -1.74814458675803 -0.098335562673156 -0.94793598423052 1.55973282691732 0.489814588088428 -0.344495885258523 0.457438444101616 1.44162350093517 -0.747369996598133 0.173915350389943 0.157002783357608 0.497510675097272 0.119709804468704 0.803742736608596 0.612214781074065 0.811190919285874 -0.360791006761584 -0.373028210759116 -2.54647406755480 -2.61106470821782 -1.01589993445112 1.22980530300163 0.354801088277325 -0.16495702014112
Rv0220 -0.774843202287905 0.376566743320855 -0.474119476331985 -0.139044325190320 -1.17787363847983 -3.11376386869644 0.359976892633231 -1.02931926757973 0.586295193116783 -0.61092142112289 -2.04070491992848 0.24785118761419 -0.135627539977292 0.594333384929897 -2.42896856556418 0.188740582275154 0.113674136279612 0.848010348338462 -0.0146438058431959 -0.98063924000468 0.855884546307944 0.264800895395123 -0.291401165522748 0.752315247853925 0.960079233680318 1.03208209625367 -1.20782934372656 -0.00292803433615004 0.156509769767558 0.796497324301754 -0.207783299912501 -0.755524156388465 -2.79621563896897 -3.93987825896979 -0.237570865007836 0.547144234345964 -0.695560037606589 0.0488039331150068
Rv0222 -0.171277862712332 -0.666307757040326 -1.54489039050827 -0.0496355482319813 -1.30593669095201 -2.13862183475382 1.11918334201320 -1.68943271700655 0.648732914808482 -0.742290583239646 -2.34579007007242 -0.591049026014241 -0.47015095161933 1.02120296510312 -0.830335222689613 0.047440178398309 -0.620932597873906 0.742208443069455 0.516715466720571 -1.70958646332758 0.330600011716885 0.231662417363709 -0.228694651767644 1.13885924263737 1.64687819424655 1.26117765266896 -1.26172800095758 0.0680344968926539 0.416545285880555 1.55871362800024 -0.328944460298673 -0.463860192995144 -2.27233454071188 -3.67176513615779 -0.941691593258605 0.495131797566588 -0.853489795915826 0.835302242877891
Rv0314c -0.539444524580097 0.880925782069855 -0.196015417234086 1.11499168366197 -1.10052169289871 -1.80377140833164 1.19587007375336 -0.417284948426426 0.93906131908652 -0.355622249764707 -1.67631339286120 -0.097978708084509 -0.838193357503622 0.819005269019142 -1.75471180231178 0.602003264817855 -0.688427055289814 1.36203261469582 1.23918755290346 -0.0590381653480307 0.357939905516795 0 -0.112695283729624 0.856115481852209 0.967090741509218 1.4242335487655 -0.535327026328161 0.213959283946541 0.328413223015199 1.40168128541444 0.594503702819468 0.281253839360703 -2.04757956151786 -2.81350791684930 -0.290173073912522 0.269332896718923 -0.945841474787213 0.395254122054912
Rv0317c 0.72471304519654 0.56070554395826 -0.750154960300951 0.365209411811312 -1.39884145625300 -1.16155269635052 0.163396166077714 -0.893275506204205 0.218495214304812 -1.80016048832724 -2.53508023681872 -0.622283529573258 -1.14845475194376 0.685053255261526 -0.888605829859626 -0.0235549623106588 -0.771117272552437 0.88716075249774 0.52641061307759 0.738791019656641 0.51849942731014 -0.614709783134526 0.91428028362367 0.52905809272114 -0.135132326220343 0.118268984865248 0.268376310750838 0.434821463885064 0.815841876769902 0.82701126632322 -0.287171353283196 -0.377739753878271 -1.91397869383492 -0.0559011267185749 -0.665339174061114 0.303318678487105 0.65485951126877 1.17412978311404
Rv0460 0.170408559557770 0.417127325224358 -0.784008830174895 0.163036901569294 -2.05183112854888 -2.34650379463935 0.165439122081003 -1.45608679468554 0.950027978562856 -0.761394556608227 -0.840447229543718 -1.59255843306801 -1.34899058245769 1.81118082778728 -2.15984320594384 0.426543185711045 -0.736586659286469 0.911094239829414 0.456518933483884 -1.01829087371452 0.855038649257876 -0.0162854771874351 -0.0160618123215454 0.827216326099443 -0.153293306421755 -0.124399843003675 0.570047592816451 1.19619723117218 1.11441506285822 0.500073658025119 -0.516691346954172 -0.476153247379073 -1.46529663063513 -3.16682142797331 -1.04048151139586 0.978423093496621 0.194068795059565 -0.485997708213594
Rv0540 -0.0205682246635672 0.0441358842122113 -1.10335932011239 0.453599835439146 -0.548465829543005 -2.629736044493 0.0376560951995009 -0.224934605161549 0 -0.294651922838890 -1.38655578022744 -0.630723268458796 -0.923916519344272 0.286844196434962 -2.60501329793542 0.61759841304603 -1.05115427712527 0.390246144490452 0.0415834066276764 -0.704812817291762 0.729913191672101 -0.0172081007947852 -0.523132918141915 0.444529890323536 0.714065033315668 0.591793024929171 0.591274804563003 0.249591968302389 0.192914649589705 0.293079832557083 0.218297765249955 0.441765998170862 -4.07672421404774 -1.15126465717534 -2.19806204455541 0.039403981514791 0.083981785121349 -0.311403834056282
Rv0890c -0.500864862309138 0.324537694615357 -1.58044123273005 0.670844381706175 -2.81486556381187 -2.22785408026294 0.866858166906742 -1.58624854880483 0.466357991132611 -0.00865804738768593 -0.363891800263904 -0.889401492589185 -1.2424079400857 1.45927735319539 -1.75182621456312 0.322103005715270 0.0701139288647567 0.943517938587683 1.21336588375783 -1.65774946970308 0.219989150662339 0.381174715913083 -0.93058747627474 0.751303568196953 0.934549093121355 0.884616623689067 -1.11658493433863 0.727894722029304 0.785339637420763 1.16592380014575 -1.03891894395413 -0.182341889173304 -2.42351379348825 -2.80861973129907 -0.687272026046908 0.520257296832136 0.0706365262419553 0.48106504063896
Rv0935 0.144549197796359 0.638195574069839 -1.57961027738412 0.613005556547431 -1.31042812317759 -2.29125222328704 0.63627360015782 -1.4141940885466 0.647314814529506 -1.00118554753262 -1.12569071003740 -1.86294218580845 -1.75893716160432 0.878624841074693 -2.15593385451569 0.822668940234089 -1.10859265279848 0.729522183284883 0.607157105251591 -1.06784965534499 0.969640585269275 0.0338215044026156 -1.51713092304984 0.131467973034825 0.335052046599214 0.418908278013695 -1.11777745984818 0.272166518418151 0.834380257630108 0.97441560545537 -0.78868939253668 -0.355570374212969 -1.80456681244865 -2.34936921019406 -0.687838382081431 0.59555023535785 -0.646035527613952 0.134323729912109
Rv0959 0.248507693407179 0.416260346787646 -0.754505517677054 1.20805471758955 -0.273757939744915 -1.63012231698471 0.473417130569629 -0.813812863107584 0.40519950620228 -1.02477965168589 -0.551856524325146 -1.31747005402992 -0.717869631985794 1.23641625481100 -0.501712550169225 0.579444263123772 -0.639943674117917 1.00006828633339 1.28351353569154 -1.05870948494687 0.423709841704322 1.04665525204102 -0.310941697164952 0.837190083755645 0.943755301097463 1.25193378928923 -0.230448507649196 0 0.644913789659412 1.48919441612932 0.0226397933841349 1.00618461310389 -1.65206131175245 -2.16113961726422 -0.31226819196526 0.396878943863044 0.522267872235248 1.43783837654409
Rv1240 -0.19264106484558 0.623500221270273 -1.92271478499534 0.659507450065165 -1.93956121278128 -2.70836979877549 0.285297457683312 -0.682768590375703 0.426958776944937 -1.45214798881049 -1.99838076849456 -1.03122965803827 -0.946474903761636 0.492996638458936 -2.19962163186191 -0.326121983004342 -0.595942196811272 1.24484150283335 0.5765713462818 -0.215629847865533 0.788885707981195 0.276306601067417 -0.247989759241928 -0.00089873944522078 0.405752137715224 0.903309342335047 -0.694386850477665 0.0140292497960321 0.397152596247933 0.60911405071144 -0.641629020577318 -0.511287980638726 -2.73277037217417 -2.31130663761675 -0.809233829961454 0.1605459021956 -1.04965695347501 0.498235203810248
Rv1547 -0.683518306592402 0.772744794514048 -1.10587130202620 -0.463774092960821 -0.538764171298125 -2.19750799568342 1.10421641623846 -2.09431816287180 0.55698952954771 -0.113687115968660 -1.07389602346225 -1.19211724187285 -0.498884301869021 0.556062737014416 -2.33973594920224 1.09423191165085 -1.09672496150858 0.719386682718006 0.101469016541044 -0.887946129239502 1.51922376982673 0.408960192456687 -0.9348028413896 0.391394461276383 0.275690237442810 0.476943928587737 -0.551276165514673 -0.240649624785188 0.0431210892589131 0.876858258564877 -0.0537701178659104 -1.03546905035160 -1.32044919106614 -3.44916583276104 0 0.59403934072355 -0.206653422579906 0.574378139364803
Rv1590 -0.401652788418322 0.203875425721530 -0.963493517465209 0.760198806011707 -0.894248227011743 -2.14153929551316 0.142206915547356 -0.572194027983382 0.157323423186751 -1.14548260421150 -1.83896357157971 -0.591378616070268 -0.890252403300464 0.627408497020734 -1.65375104160057 1.40302947067666 -0.914505606966784 0.623522291781368 0.403398129498358 -0.54697923423828 1.82944885249786 0.257797287548755 -1.19750416235043 -0.81842300712866 -0.124279714400233 -0.236237705555730 -0.665666286621482 0.784827669780353 0.681066544746504 0.97398605468055 -0.940350957205988 -1.10680446597435 -2.48082417902456 -1.95027899656935 0.355240864548314 0.421650859955482 -0.194829398982679 0.565369495623929
Rv1591 -0.440935575029986 0.388100543162483 -1.25291074041277 0.0156809213544051 -0.383986831573846 -1.76757075821238 0.680685289786664 -0.204216069470276 0.429311840789916 -0.0512817610589016 -0.165582154586144 -0.835655906303393 0.146037818257528 1.13012946664455 -1.32711351258998 1.12527282296401 -0.248562702064907 0.694992513698227 0.336935048725739 -0.758270746495112 0.95089411874394 0.421358612516817 -1.88368387623955 -0.643269279244288 -0.531943179639854 -0.0449222361244263 -0.440228669198581 0.871599886631548 0.352903399291138 1.29562988707690 -1.14613026456863 -0.883645444879663 -2.32886309296925 -1.29405164144679 0.260624243769605 1.08294521078145 0.0943729871417369 -0.272636667967686
Rv2048c -0.898673464596136 0.811780466994139 -0.702178482785083 0.164063112430359 -1.62866171769887 -2.82203551566556 0.702241727822764 -1.4663625876869 0.399401722391815 0.198660112135504 -0.680841840842729 -1.31783674180573 -0.93281812436433 0.881169417755395 -2.20468132298095 0.713733181235397 -0.702269641345236 1.05170194833327 0.923115745740276 -0.851722684599512 -0.524111105150269 -0.159266218909297 -1.02280529061659 0.0101695668605449 0.0675498168357655 0.0523591468848262 -0.664289560397518 0.395951940784929 1.16499912976983 0.98425052826505 -0.99163406501727 -0.614879444899013 -1.51787615728405 -0.674452689464897 -0.0692927446658716 0.232127380115372 0.244380439975249 0.948967217694322
Rv2732c 0.215013109075732 0.326675249333999 -0.26938290465291 0.192902303958966 -1.37173551218289 -2.37843435354807 0.975271346433136 0.535004233336 0.952740300920332 -0.548538361919831 -0.164681925406614 -1.46239054206328 -0.157435551333320 0.96933686326779 -1.97768278125620 0.0253714223445834 -0.0792978831201694 0.79143292118436 0.271357252786653 -0.691185312940513 0.912846260727668 0.494437450601518 0.0672209932315763 0.15050116679492 0.435727718129818 0.511254236722249 0.451191693802241 0.332564788006714 -0.0692444961858079 1.70069579671 0.860515705643872 0.249749082061797 -0.946219996977444 -3.257783532988 -1.12571419867272 1.03107618531101 0 -0.606380133183298
Rv3096 -1.15414940429101 0.94976030243106 -0.848578359933356 0.585344593115993 -0.958514880445631 -0.338140410569827 0.857941439910162 -0.473260110824959 1.99517548221886 -0.861407411511172 -0.99769282972166 0.2821744730751 -0.899936451023059 1.35520034992214 -0.638134548631978 -0.642334774253449 -1.58431014242384 1.0273373568679 0.764393504215879 -1.86527195591416 -0.294611660759729 0.957502291805337 -0.96301775266081 1.09515310307606 0.991275809524728 0.837363799569617 0 -0.413738848359881 0.273793682690651 1.07047443823062 1.14565223335104 0.163067627919764 0.205673117718934 -2.24967375296472 -0.614268579610163 1.12239904630721 -0.875757051252236 -0.12431530641842
Rv3146 -1.02341666915798 0.896793707916351 -0.95677564432152 0.464401074410188 -2.15362530944913 -2.39534337985275 0.828744110010046 -0.487367637971188 0.117350093922409 -1.01817909348242 -0.832410818023903 -0.96740253417301 0 -0.623327982729492 -2.04761029653715 0.084696860367378 -0.418308529531941 0.68101222162648 0.809643204411319 -1.90424469261296 0.797715924115927 0.600738568916514 -0.00235550513878454 0.476905868522229 0.0844541030644045 0.658112854288005 -0.940753760730542 0.669536585085234 0.304387903090073 -0.0432338826475091 -0.409731573365562 -0.31841497209731 -1.70562908886757 -3.32903694497222 0.32763170467556 -0.133412684494423 -0.770760263504846 0.835996376919507
Rv3148 -0.796464413074364 0.522911182320607 -0.597297931413318 0.69904827390528 -2.47840241682957 -2.56987105693091 1.71265246907994 -0.607133647880745 0.704075402798257 -0.951340584505963 -0.531829458065832 -1.24272947177551 0.124992764657617 0.791532955994163 -1.58260340693590 -0.131638943053301 -0.201514870709570 0.66434588220099 0.625092221585366 -1.68529389218482 0.212995094551725 0.618504251999067 0.423454637868346 0.692010138179454 1.03379174605639 0.867629391558589 -0.588364038849376 0.648533625227237 0.407326529421703 1.52597237429336 -1.02300503465296 -0.00178727784017940 -1.76471967749044 -3.12415920467592 -0.158954734780166 0.46856059034327 -0.7792468673824 0.232792519622487
Rv3233c -1.10920361928135 0.728516264128121 -1.52208283968355 0.0254575084179460 -2.04785962579107 -3.46013299399199 0.134611006796324 -1.96568792295282 0.619329091020953 -1.10989317907277 -1.64158069387307 -1.52179444865897 -1.80215554713507 0.526330194297097 -2.30648736673466 -0.195715967534226 -0.826143338528604 0.254526504242845 0 0.983074447886352 0.723964187721714 0.0139483453560101 -1.67020543640946 0.0753343658692461 0.267029961738279 0.288086225696438 -0.590187571556452 0.0711609207654518 0.455534315491683 1.62642336341051 -0.353365608324183 0.336665974331220 -0.96744435297597 -3.11729408280648 -1.19866401752594 -0.113195531850633 0.0785778928079185 0.430865393458625
Rv3678c -0.325105559170327 0.697060968396315 -1.42226815377563 0.123118778020186 -1.56252503320065 -3.66413301261371 0.971390720698826 0.534477189018639 0.746747189194559 -0.0772164163521907 -1.04418195621780 0 -0.323991336769953 0.856225694783987 -1.64766625720261 0.160764612204072 -0.323787363054174 1.02677729839691 0.356638160832911 -0.534911642213861 1.88941040677040 0.337682105827005 0.307930224990519 -0.332664938305353 -0.063808421243352 0.463188870136063 0.0566190004471106 0.714923335896249 0.489954344097823 1.05488368572136 -0.725703160120519 -0.902726960850296 -2.16699621114251 -3.00142613736878 -0.0404331216329869 0.546319272568726 -0.678308615755525 0.285155632239677
[+] Show/hide bicluster #44 motif PSSM #1. bicluster 44 motif PSSM #1 Mycobacterium tuberculosis H37Rv 17x4
POSITION A C G T
1 0.222222 0 0.333333 0.444444
2 0 0 1 0
3 0 0.222222 0 0.777778
4 0 0 0 1
5 0.111111 0.555556 0 0.333333
6 0 0 1 0
7 0 0 1 0
8 0 0.666667 0 0.333333
9 0 0.111111 0.888889 0
10 0.444444 0.222222 0.222222 0.111111
11 0.111111 0.555556 0.222222 0.111111
12 0 0.444444 0.555556 0
13 0.111111 0 0 0.888889
14 0 0 0.666667 0.333333
15 0.333333 0.222222 0.444444 0
16 0.222222 0.111111 0.333333 0.333333
17 0 0.111111 0 0.888889 [+] Show/hide bicluster #44 motif PSSM #2. bicluster 44 motif PSSM #2 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0 0 0.090909 0.909091
2 0 0.727273 0.272727 0
3 0.454545 0 0.181818 0.363636
4 0.090909 0.090909 0.090909 0.727273
5 0 0.272727 0.272727 0.454545
6 0.090909 0.272727 0.545455 0.090909
7 0 0 0.909091 0.090909
8 0 0 1 0
9 0 0.727273 0 0.272727
10 0 0.181818 0.727273 0.090909
11 0.818182 0 0.181818 0
12 0 0.636364 0 0.363636
13 0.090909 0 0.909091 0
14 0.545455 0.090909 0.363636 0
15 0 0.090909 0.090909 0.818182 |