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[+] Show/hide bicluster #41 rows and columns.
bicluster 41
Mycobacterium tuberculosis H37Rv
14x35
[+] Show/hide bicluster #41 rows (genes).
bicluster 41 genes
Mycobacterium tuberculosis H37Rv
14
[+] Show/hide bicluster #41 rows (short gene names).
bicluster 41 short names
Mycobacterium tuberculosis H37Rv
14
short_name
[+] Show/hide bicluster #41 rows (long gene names).
bicluster 41 long names
Mycobacterium tuberculosis H37Rv
14
long_name
[+] Show/hide bicluster #41 rows (NCBI RefSeq gene IDs).
bicluster 41 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
28
[+] Show/hide bicluster #41 gene upstream sequences.
bicluster 41 upstream sequences
Mycobacterium tuberculosis H37Rv
14
upstream
[+] Show/hide bicluster #41 columns (arrays; conditions).
bicluster 41 arrays
Mycobacterium tuberculosis H37Rv
35
[+] Show/hide bicluster #41 ratios.
bicluster 41 ratios
Mycobacterium tuberculosis H37Rv
14x35
GENES Antimycin CCCP Clofazimine Clotrimazole CPZ DCCD Deferoxamine Dipyridyl DNP DTNB DTT EMB Eta GSNO GSNO_CPZ GSNO_KCN INH KCN Levo mercaptoethanol methoxatin Mtm Nam Nigericin Oflox PA_1 PA824 Palmitate pH5_2 pH5_6 Procept_6776 Succinate TLM TRC X_59
Rv1584c -0.588269352179152 0.125071961476019 0.60455668539524 -0.0551259603941503 0.69267330815492 4.45920758762213 -0.366106973057992 -0.142401543145614 1.24175412690651 -0.254339743572142 0.589167531633607 -0.288686832548934 0.119516700853789 -0.247260259305688 0.937811707694462 0.930084868064473 0 2.17004231958204 0.253452061464551 -0.354007938938233 0.0281967639175519 -0.189751063063573 0.617213114858596 -0.522253751976956 -0.0829473744332692 -0.564806518296094 1.16519514337958 -0.224034878801164 -0.21407884258187 -0.389035717278505 1.16371452226027 0.0171302003842340 -0.0097771908454473 0.598927978635906 -1.11763319591283
Rv1991c -0.266365972053528 2.19272863887382 0.521495101774784 -0.407969711039192 0.146016821336787 3.70544719858195 -0.145309106033918 -0.237045970458114 2.36520430422048 -0.322958291007441 1.02197318910931 -0.557733594773345 -0.0649556372975515 -0.545152975472679 0.147280680982019 1.06828129109663 -0.264812479072241 2.63058158994237 -0.255419748760264 -0.403470314004259 -0.426251662487835 -0.427891604930391 0.463918001609046 0.822759707542287 -0.074494578310527 -0.79072775500537 1.80268107257757 -0.842293250460711 -0.404854511646802 -0.418290892437598 0.777865539902459 -0.798972046576483 -0.0237534674672045 1.42729418039525 0.258664220296541
Rv1992c -0.530475747142089 1.56377691038056 1.44926606499747 -0.212626576903352 0.0842161729712282 2.665102153766 -0.409351617469798 -0.209456483013802 1.54598121625030 -0.245566369346202 1.26960479544191 -0.54100203044965 -0.207661188388397 -0.240531060220234 -0.189028632422181 1.39507710070643 -0.552168343522173 2.25404022519287 -0.590217112890131 -0.179424827001484 -0.137099058985458 0.119938591763198 0.119938591763198 -0.114021490532488 -0.590229462470552 -0.434153374490856 0.944578237512356 -1.17717119595426 0.119938591763198 0.119938591763198 1.05423345667480 -1.39434568797240 -0.335413182139769 0.595559045826698 -0.598565371454795
Rv2374c -0.444977604233274 2.22048921155749 1.00208044102777 0.0163170763869567 0.351187476543171 4.23112582809369 -0.475260272894941 -0.276407167438256 1.9136158005747 -0.0651198347561792 0.593772940388147 -0.513371069192837 -0.54765776475207 -0.567301501679837 0.596276955743887 0.657431243004622 -0.670568628551161 2.91982659176242 0.298670101670408 -0.503473450303170 -0.417596680066357 -0.367689603171252 -0.333003833924127 0.970124726818654 -0.537726707982482 0 1.22055660159135 -0.574709838424435 -0.261262692073971 -0.604271423590951 0.95432513555885 -0.662344445492672 -0.166755987379107 0.558485226042182 0.165097148588179
Rv2516c -0.251598022021851 0.483758608510988 0.125351825158792 -0.263927565206228 -0.525362873758435 2.89939582182894 -0.456115273856195 -0.283719856834885 0.5455426833414 -0.290289802183421 0.821517657145998 -0.327619052646181 0.175408611636230 -0.608084380734596 -0.488146023180401 0.74974435826547 -0.60863740735923 2.58469089028553 -0.245019047578421 -0.31101794791888 -0.425713768857661 0 0.670490199013874 0.369016874426353 -0.438623803389784 -0.734881073465637 1.39544505505800 -0.336317313161996 -0.152824622895712 0.097730265502725 1.49263266773536 -0.361435987753771 -0.325268949540168 0.859614815688598 -0.210654199817047
Rv2517c -0.731451151266946 0.970062143175327 0.657220688888867 0 -0.158954808227697 2.49979761119165 -0.315288518897147 -0.182805103766615 1.07123208655304 -0.109389864404705 0.349560554418197 -0.247667010829217 0.0436466037089009 -0.0869756218694275 0.216127725160357 0.327214123518037 0.196112512571012 2.27036904881210 -0.255000564446289 -0.231030196884250 -0.0611920835612781 -0.946744119200278 0.598186486032141 0.164337644050837 -0.280153172019705 -0.71540947749827 1.74569598799269 0.38530376865746 -0.384669283142832 -0.476637198126311 1.11796226053671 -0.0625659498749255 -0.0621011642336715 0.90161624578508 -0.519644351339745
Rv2554c -0.280735875722187 0.852655276484988 0.734422233394623 -0.220725956364607 0.382731019544465 4.06805882436901 -0.46733241799651 -0.0701088136566546 1.28532431592538 -0.654800667970253 1.01740545365795 0.444245846149442 -0.0599837740195208 -0.717895683646776 0.46913417224451 0 -0.147921853984208 2.25856718533035 -0.3188887363449 0.0578233921920489 -0.628739834871193 -0.169466973711840 -0.126459082122371 0.209476350131969 0.496520461591231 0.0665317216387917 1.53335679397488 -1.49915528176976 0.063306859169192 -0.151533183996830 1.52600872401016 -1.2071882734194 0.178460728383378 1.01241236428571 0.179818936821899
Rv2650c -0.450340688754867 1.43108351418173 0.162300205871253 -0.190651549087149 0.677618847019967 3.40944941545592 -0.240838693551886 -0.424099858837117 1.31559068501902 -0.16599025119414 0.975209882985739 -0.586641873324626 -0.175428839009232 -0.126177843748525 0.374194049272682 1.29115913629794 -0.369676005206646 2.15080184138295 -0.199153879510118 0.183322158673742 -0.573035181705316 0.0437339670526584 0.237857998738515 0.342666458916073 -0.304314105035559 0.171695621933997 1.52485307299822 -0.60081230486588 -0.0407679658284564 -0.347011045720545 1.75926665101224 -0.713082708212152 -0.210604770531362 0.512498325773366 -0.109529132307313
Rv2651c -0.37501350542556 1.28813992340086 0.231157252436074 -0.202291566668185 0.560395367630405 4.77371596550822 -0.296304210846734 -0.0333322856649438 1.85103316911193 -0.691321784937836 0.77271700076157 -0.498888290887393 0.221129603059931 -0.295243311530779 -0.192404834142698 1.10845661287462 -0.202936162908119 2.32409614153923 -0.298563940516146 -0.382633448507600 -0.494547351986921 -0.120510084773562 0.337707383376796 0.443776940581408 0.288620133553055 -0.133045284017593 1.16144280378896 -0.57136650873724 -0.351508858640756 -0.105303805060215 1.12776620479186 0 -0.232411840900906 0.306440081043552 -0.06699267596207
Rv2665 -0.134921407411640 0.653440962613415 0.719055482381887 -0.208751535566377 0.233612331620717 2.92256025151259 -0.235786518295941 -0.0555900518615113 0.0434664988760111 -0.355321179043464 0.394058950536441 -0.271562409081657 -0.352647650426886 -0.630543995982927 0.615807596310175 -0.0130893438202440 -0.29548378882598 3.08942899103377 -0.0781464039667087 -0.330176583920842 -0.189393845663883 -0.467157171877819 0.0927795175223881 -0.451378124786612 -0.0330280179990415 -0.538916593062486 1.71548548359894 -0.550723013862658 -0.137570995635586 -0.0384538814488737 1.82836617080768 -0.61498500670429 -0.0487640451641644 0.59542912386375 0.104594599008984
Rv3182 -0.319195626259799 0.58455469713924 0.86644188186391 -0.122818557970916 -0.0577720426142715 3.34489845944169 -0.350470121855217 -0.349251743392557 0.987988548619983 -0.334367394972132 0.648745752630277 -0.0838638092075787 0.082901655225512 -0.245321919529283 0.172166579230348 1.17581712741797 0.087043352946499 2.73098195051351 -0.248342492418324 -0.299233318578318 -0.151755965333792 -0.446414922648144 0.622395438352717 -0.51584777325718 -0.0333740949732832 -0.500339178385304 1.92094175481761 -0.176568822265162 -0.376199471003013 -0.438498161998866 1.52132004566532 -0.102287760725837 -0.526458574590914 1.10972765524203 -0.0299315396968304
Rv3188 0.0485528453038279 0.977148338675846 0.724324740250204 -0.496615742838057 0.307326674332269 2.23538470337471 -0.275427469597148 -0.181754311670799 0.725917321443404 -0.620344263693277 0.00638386275583632 0.0403053013924521 -0.146194825700955 -0.474327984033509 0.260132339467184 1.59835570318982 -0.742067972003253 2.77068900152899 -0.160219716606657 -0.455161912115029 -0.0910578455449008 -0.251510697655476 0.647658425814285 0 0.00282857612640494 -0.177202148669051 1.88044105353312 -0.368904992325197 -0.105710822006396 -0.391681073446992 1.94847045194186 -0.415852343496462 -0.0574542462477728 1.17353408363609 -0.177150014238984
Rv3334 -0.430167822340986 1.26204750388187 -0.0934535014389328 -0.428088525925027 0.308549846560470 3.39902975458823 -0.119345222030342 -0.0729708801967155 1.45598061207977 0.0674928800625758 0.645610293526425 -0.30086480344248 -0.429637382833954 -0.185540651885571 0.418089369594998 0.954883001472062 -0.646592005366762 1.34435656787164 0.0553593378879615 0.341817964098763 0 -0.418114529143012 0.391112288687850 0.0410439812325562 -0.075783649161844 -0.0634997555992079 1.07262357517989 0.312211226043183 -0.620974911240411 -0.322580712788199 0.355097868065012 0.38707140437798 -0.275013833021640 1.16017213849968 -0.502377441105535
Rv3504 -0.103985092802191 0.848415956643544 0.337358413234958 -0.235213531953419 0.0578974301394414 3.11051363825664 -0.186195622334459 -0.57144022955803 0.658696762991445 0.0615104774062529 0.797724865490245 -0.511671471893527 -0.130131180357503 0.0796843628580691 -0.469094348512948 1.07204873900449 -0.212479431454865 2.68577742426116 -0.4012601000158 -0.207139266928647 -0.0338495549290013 -0.341175815046720 -0.0595195797061474 0.184763293413901 -0.290990028834129 -0.48245417495393 2.30219139841445 0.110031328383641 0.135377556308415 -0.279843609515552 1.60075197345755 -0.0573406456944269 -0.199561416706053 0.383061359423283 -0.268811430617079
[+] Show/hide bicluster #41 motif PSSM #1. bicluster 41 motif PSSM #1 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0.625 0 0.125 0.25
2 0 0.25 0.75 0
3 0 1 0 0
4 0.125 0.125 0.5 0.25
5 0 1 0 0
6 0.125 0.25 0.25 0.375
7 0.375 0.375 0.25 0
8 0 1 0 0
9 0.125 0.125 0.75 0
10 0.75 0 0 0.25
11 0 0.25 0.75 0
12 0.75 0.25 0 0
13 0.5 0 0 0.5
14 0 1 0 0
15 0.375 0 0.5 0.125
16 0.25 0.125 0.375 0.25
17 0 0.375 0.625 0
18 0.125 0.625 0.25 0
19 0.125 0 0 0.875
20 0 0.125 0.875 0
21 0.125 0 0.875 0 [+] Show/hide bicluster #41 motif PSSM #2. bicluster 41 motif PSSM #2 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0.857143 0 0 0.142857
4 0.428571 0.142857 0.285714 0.142857
5 0.142857 0.857143 0 0
6 0.285714 0 0.714286 0
7 0 0.714286 0.285714 0
8 0.428571 0.285714 0.142857 0.142857
9 0.428571 0 0 0.571429
10 0.571429 0 0.428571 0
11 0.142857 0.428571 0.428571 0
12 0 0.428571 0.428571 0.142857
13 0.714286 0 0.285714 0
14 0.142857 0.285714 0.428571 0.142857
15 0.285714 0.285714 0.285714 0.142857
16 0 0.142857 0 0.857143
17 0.142857 0 0.714286 0.142857
18 0 0.714286 0 0.285714
19 0.142857 0.285714 0 0.571429
20 1 0 0 0
21 0.142857 0 0.857143 0
22 0.714286 0.142857 0.142857 0
23 0.571429 0.142857 0 0.285714
24 0.428571 0 0.428571 0.142857 |