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[+] Show/hide bicluster #35 rows and columns.
bicluster 35
Mycobacterium tuberculosis H37Rv
22x39
[+] Show/hide bicluster #35 rows (genes).
bicluster 35 genes
Mycobacterium tuberculosis H37Rv
22
[+] Show/hide bicluster #35 rows (short gene names).
bicluster 35 short names
Mycobacterium tuberculosis H37Rv
22
short_name
[+] Show/hide bicluster #35 rows (long gene names).
bicluster 35 long names
Mycobacterium tuberculosis H37Rv
22
long_name
[+] Show/hide bicluster #35 rows (NCBI RefSeq gene IDs).
bicluster 35 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
40
[+] Show/hide bicluster #35 gene upstream sequences.
bicluster 35 upstream sequences
Mycobacterium tuberculosis H37Rv
20
upstream
[+] Show/hide bicluster #35 columns (arrays; conditions).
bicluster 35 arrays
Mycobacterium tuberculosis H37Rv
39
[+] Show/hide bicluster #35 ratios.
bicluster 35 ratios
Mycobacterium tuberculosis H37Rv
22x39
GENES Antimycin Ascididemin_Natural_product BZA CCCP Cephalexin Clofazimine CPZ Deferoxamine DIPED Dipyridyl DNP DTNB Econazole GSNO GSNO_CFZ GSNO_CPZ GSNO_menadione H2O2 Levo menadione mercaptoethanol methoxatin Mtm Nam Nigericin Palmitate Procept_6778 PZA Rif Rifp Succinate TRC TRZ UV Verapamil X_111895 X_241 X_59 X5CL_PZA
ORF04174 -1.06512619345921 0.137827785799876 -0.489206197670013 2.25064610600809 -0.407680235258939 1.36474935721459 1.03089405497843 -0.579752376218015 -0.177670018514488 0.0942875207719405 0.878475857116811 -0.390838598835077 -0.313533822424747 -0.733941944914031 1.23527269800437 2.22433857809772 1.56738433663289 -0.795566288533026 -0.875808057793923 1.37940514794674 0 -0.990936895534523 -1.13674884074653 -0.356812220519231 1.33805487153079 -0.585356000719324 -0.58545492741494 -0.792815521106807 0.64624087755752 -0.106987157161990 -0.966935857738302 0.73822919336814 1.97627806359053 -1.16575746126234 0.703816019387847 0.356843834206555 0.799172583013277 0.0823182194302061 -0.441646766111267
ORF05088 -0.680965587441409 0.322290998043766 0.0856672396012766 2.49709190538566 -0.00666209825235083 0.5885539413092 1.16348259996602 -0.892123112144624 -0.418853018554556 -0.218641607926074 1.32347323121244 -0.32830015307207 -0.271362151174643 -0.257030306835343 0.640908487959524 1.6396402749784 0.84962857671488 -1.07575596426716 0.810162366022683 1.04011614641928 -0.326969260426953 -0.732763436311463 -1.09757976071740 -0.0906550253153545 0.510264637338336 0.431674130894989 0.265788316267276 0.134761025174591 -0.877791453197976 -0.569154605744658 -0.301427970533397 1.04877520827926 2.81424641705671 -0.181004002503242 0.274053142471892 0.410901113334388 -0.15561922035886 -0.262136066496614 0.0242944261646996
Rv0262c -0.976611890682036 0.340016984780346 -0.195923686836795 0.966759485165438 -0.41474874005316 0.689633509780344 2.38363870443791 -0.832437034096337 -0.750306946980145 -0.689831605185955 1.31198356662009 -0.0197996555283675 0.396065150439777 -0.529897502208058 0.275197497328396 2.95109874515771 0.944647383102794 -0.952323867315424 -0.475583798284871 1.10122364340874 0.089580749810294 -0.33272404852105 -0.958420656278557 -0.968976364174151 2.00759871904317 -0.109097864595452 -0.179916422028685 -0.701301896335971 0.0965372978753206 -0.345155148035509 0.463566938210841 0 1.69595494038872 -0.821915213672085 1.07332476556802 0.260331529889854 0.713791361902309 0.387672776607986 -0.493688800800985
Rv0724 -0.494188525243203 0.277311354348882 0.252533162930057 1.2425112725572 -0.366540418477636 1.84666310490949 1.72020445873074 -0.405917631033405 -0.318203268962468 -0.688315567871894 1.41142118643611 -0.241213441940948 0.688617465257204 -0.371170329190795 1.20771430526964 2.59440507162757 1.58007589802230 -1.03077870811129 -0.775366315159572 1.21121121862208 -0.0868283065395396 -0.126488180132692 -0.167938285668320 -0.0745592090279872 -0.03603356246376 -0.71299995037237 0.220574267539072 -0.626486333920139 -1.44391959009796 -1.41923702902908 -0.572655186078974 0.95002872415286 1.85461760470403 0.066503583443248 0.300550573335678 0.400584215146748 0.95091084151612 0.939722121717478 -0.179591853498755
Rv1829 -0.0353089799682571 0.740783136771724 -0.96058667633244 0.997649952071893 0 1.63209054858412 2.55790174804022 -0.182585757903673 -0.169766953134538 -0.076229762144725 0.623142930435472 -0.0986476166123533 1.40039616906397 -0.293426248037004 1.75847782437694 3.35805283280734 0.667817346863661 -0.874537069824924 -0.764516150753802 0.622122954807172 -0.138345970728314 -0.225394069680992 -0.177622808971079 -0.901440751963652 -0.906303567765077 0.680273805502544 -0.687439770670604 -1.12181101542067 -0.252166036904979 -0.270151613944548 -0.0455955982879916 -0.152833570432024 1.90767546675752 -0.403619271571831 1.13491492973934 0.907055863756435 0.556735464512196 0.595277847947884 -0.662440503322636
Rv2053c -0.666342149819466 0.509019534128731 -0.388795064803515 1.24791812935152 0.134329778117384 1.59198788864426 1.72274466621733 -0.435475665279741 -1.12450025980224 -0.290243491862297 0.896836122863676 -0.176430489305200 0.808967242282386 -0.441268025979542 0.557399184475698 2.27977445891041 0.955529059162543 0.0529335154021455 -0.606532113296292 0.781154052270574 -0.326340156386058 0.143703580474328 -0.443299484465898 -0.493024771726195 0.945119685378369 -1.01077410744214 0.25991891271708 -0.318636280204296 -0.545423873446231 1.06969813875211 -0.990336816496336 0.166088088657993 2.90836004656349 -0.179143782252246 1.19182170770947 0.47380143835865 0.554291916678408 1.46170060029905 -0.80441670507097
Rv2091c -0.480701936448672 0.408338912748651 -0.203081918842245 2.02268814037381 0.180536385909984 0.574412000176559 2.58971467078141 -0.868100842300731 0.812905071421749 -0.519964984358584 0.668973652553992 -1.31601920289333 0.360466933145384 -0.381924322202829 1.29882452492968 3.39635488338866 1.56302602406135 -1.9535919883765 0.171701826530875 1.55265475019051 -0.725945401971093 -1.05444040951122 -0.281369781465176 -0.590675494806351 0.144937264585258 -0.623486149514474 -0.542576583913875 -1.05356935639082 -1.94196035993502 -0.725031221637364 -0.929466370445434 0.570022704507808 2.20900724301562 -0.577851448921088 -0.341748556669113 0.303666620284213 0.935828031509821 -0.158205157363326 -0.693787839222948
Rv2115c -0.690032901452547 0.59356842428622 -0.547078811057562 2.41108489054947 -0.0218583202512704 0.887325814034843 2.73129385075794 -0.6555665600828 0.189821175765320 -0.210816296268336 1.77076439937734 -0.143881273427349 0.796790544792689 0 1.66182368162655 3.49527456285531 1.49923196771828 -1.76761470894997 -0.397952853711802 2.07676156652582 -0.210958630885003 -0.464281460033663 -1.25752114474467 -0.8877617418373 0.57016772064137 -0.487174553257967 -0.588317575511765 -1.04060241160010 -1.52116669122915 -0.0863672472541556 -0.861839335891501 1.26346038537928 2.27481323062118 -1.26140245646854 1.00115862258260 0.865768347111238 1.27059839143265 0.758178221873071 -0.829963105708235
Rv2175c -1.03077090384103 1.05934029069950 -0.0790413501406957 2.74045539239237 0.119126210044600 1.16445454047450 1.72557348179506 -0.201120791230609 -0.130105623714544 0.353677247658285 1.34950445317519 -0.617494969081713 0.411958686168275 -0.53641635403589 0.750720933513675 2.30092533428919 0.86878878511854 -0.757688050246177 -0.162715954503394 1.48734527806691 -1.25905427783386 -1.5120817144134 -0.832871021428171 -0.554380999324299 0.751954996085574 -0.474435161639601 -0.270558302482713 -0.659131357801259 -0.511464596223163 -0.34859264605234 -0.655998722382164 0.838771079022295 2.15801860940423 -0.541701709142133 0.32339491814892 0.452038104966478 0.434703840808003 0.100026025191862 -1.27288807116774
Rv2663 -0.885136381460669 0.326400542141416 -0.640464729619895 1.42346364825171 -0.677108585599651 1.86169928517190 1.23223431298257 -0.670476073102191 -1.08030633823988 -0.371325899798390 1.49962397775101 -0.406521994611186 0.376859037020605 -0.052213586611709 0.612333955777624 1.57534969627696 0.708218646243493 -0.502169221811572 -0.303555024559794 -0.0787140787654346 0.203994760563094 0.250500527077644 -0.77016786965241 -0.505528466900123 0.339202523213794 0.278856962013093 -1.03776984799327 0.246562158997628 -0.572542580854318 -1.20761356417055 -0.327314879000817 0.605480721695904 2.14728731708354 -1.03815692609547 0.966197692195276 0.346096411659804 0.0922492496832864 -0.154036691683187 -0.930052671773367
Rv2708c 0 -0.266993560654419 -0.27391795512292 1.50115232401492 0.359219926032106 0.0319920732625243 1.81474570988628 -0.432000367047931 0.229171703470383 -0.778237898163384 1.29526830595381 -0.398338962476828 0.190704568163140 0.232446593855025 0.860087380646006 2.52894074602772 2.12528734271735 -1.61599559352204 -1.47064420375431 1.65050739761508 0.0629803626814173 -0.86478049893988 -0.135491104480001 -0.520975113001123 0.909117576505788 -0.339140228711729 -0.354332086629284 -1.26201976669928 -0.82415881765349 -1.15992775128007 -0.666935517051905 1.01341114122818 0.930484688786011 -1.22414749180351 -0.121273458167241 -0.544253428173294 0.246320175137490 -0.369299279581984 -1.42492227896945
Rv2743c -0.629160378593337 0.54740836755028 1.15432948762769 0.422503971014409 -0.0453444447170161 1.06814992371060 1.45051329974484 -0.115315901117218 -0.282556971869207 -0.128101610805088 1.95506938053974 -0.589182401379918 0.0667616251268365 -0.991890607396283 0.556222691051163 1.90150794260769 1.55716026797659 -0.105684859907111 -0.339748156748209 1.83843935073505 -0.116321816704995 -0.374649723743656 -0.627141500102738 -0.183460541807059 -0.165206165967054 -1.38288484686194 0.628694993899274 0.50218433104852 -0.55751955598976 -0.0822299098106692 -1.14810286570189 0.729906127409105 2.44822281524406 -0.426765157160523 0.116704902666418 0.588530728312246 0.564639442824258 0.425019980283293 -0.491330612701218
Rv3197 -0.553067771369865 0.881618703746763 -0.23508840876777 0.32680648968768 -0.452160357843138 1.53511456844467 2.00606155285826 -0.976044338530707 -0.314732077985018 0.0726370074699924 0.276935214719199 -0.492534798551557 0.754541517357906 -0.244719883256512 1.99129161732326 2.68096703539228 1.74491024884891 -1.39323021508846 -0.490577810620123 1.03500922405329 -0.443267257317556 -0.207997294306717 -0.595836215590179 -0.560899961978187 -0.0317788276055218 -0.405769351869206 -0.859226862194638 -0.281369719404276 -1.11934957647094 -0.369134270193865 -1.03117992479298 1.07871488624969 1.73882463591712 -0.668374672926561 0.509089181877934 0.7890384778969 1.42574754232084 0.672644134541722 0.703663567368426
Rv3241c -0.687850076875165 0.68620421525289 -0.69875330410857 1.78676303780328 -0.182961834236866 1.60172760772724 1.85492087056812 -0.330681603672487 0.0894844910601107 0 1.08658976024112 -0.0727050867345695 0.604085977703409 -0.246516763975881 1.60423259270811 1.92987529724944 0.41268403788116 -0.968539807491758 -0.264535003179384 0.374755344616273 0.0823897067752196 -0.255657400583118 -0.351423666165442 -0.934790465475521 -0.459786939053989 0.175860918219024 -0.72312174279935 -1.26335165887166 -1.20458845989205 -0.365571505793076 -0.47610382332162 0.695303377883523 1.00706791596025 -0.382911226418745 0.560801169234166 0.848668883286439 0.709597820187366 1.11118598489831 -1.87406222545996
Rv3802c -0.994373688759758 0 0.0495198301951283 1.11876196385108 -0.0566626964812958 1.11151181690454 2.1190342675658 -0.171257855650132 -0.768718560755412 -0.126020126658014 0.594761803868072 -0.471831872627343 -0.318883139374497 -0.161405995109283 0.755475086534713 3.15117918588778 0.98514378842521 -0.93634196099585 -0.439943584034056 1.49945946308391 -0.458845902982327 -0.319938134152947 -0.604213548359029 -0.0649845482827054 -0.159020222976411 -1.07238092683419 -0.189689329949212 -0.609794813684262 -2.46816927939120 -1.41067835038242 -1.32358882793498 -0.623399094238732 2.05271778240038 -0.628969033480734 0.448083862634938 0.387619565331998 0.504958424500877 0.38333442414259 -0.298814815587245
Rv3815c -0.487194281311283 0.468706505457153 0.716233540513048 1.67878046835385 -0.0612557446685594 1.35492393629038 1.54447693252011 -0.321240666412285 -1.07366204674787 0.0417272474553625 1.25734884216093 -0.428630430024587 0.307897591531771 -0.121480477253427 0.799592406720703 1.78211357790667 0.953380728733856 0.152367598816969 0.455952703957816 1.13200075814571 -0.511551156849202 -0.515594702276031 -0.828846528264258 -0.189176093221929 1.15811129860875 -0.360543783894741 0.608479415381362 -0.238032462946837 -1.13052244583792 -1.16250988217154 -0.246460553655008 0.484998254409672 1.63140330784318 0 0.19711392691558 0.608085776356551 0.103976652205444 0.125608468702319 -0.449745385180307
Rv3863 -0.136019798939454 0.231527011377041 -0.199600408976651 2.52520440237428 -0.280465760420748 1.22198426011182 0.98107177349455 -0.397144856426642 -0.750499941961752 -0.543605629163964 1.15764117402202 -0.301909533825443 0.396027451279289 -0.316109405467894 0.501437586977532 1.26827406520308 0.0236209334717379 -1.25951688399783 -0.311762189368692 0.116509286618303 -0.088896422683799 0.514622609310345 -1.13079238708221 -0.687077438355545 -0.124036995564614 0.366763054783962 -0.716715546468557 -0.99486164782891 -1.12697970387526 -0.776335585399214 -0.196441112882476 1.37815526047435 1.40680207316737 -0.870696861198183 0.524598786740798 0.366682864363604 0.0314435816259477 -0.264000152570201 -1.24322706518175
Rv3864 -0.565434491617251 0 0.807777955239699 1.43100873513056 -0.22091063809535 -0.0168651365502556 0.462937440700153 -0.652769776629512 0.277389057551836 0.0715922063491267 0.652139380962201 -0.197675598029822 -0.450713107198335 0.335705451323738 1.08914034474507 1.2023328540573 1.11423701306599 -0.861791576756933 0.201902093791509 0.445500280787458 0.255041319102559 -0.75934217622866 -0.499857885347129 -0.0728528044439511 0.507310266147285 -0.432940285125817 -0.997904374372552 -0.501288444209593 -0.845090800491512 -0.40533314947404 -0.96130555596465 0.141711639618084 0.38868946226237 -0.741964695014451 0.46123697559447 0.351766896606099 0.397824583334405 0.129462176842490 -0.991327721628933
Rv3868 -0.332312604182879 0.520134960561137 -0.377802064142698 1.24865358781883 -0.00449718874117161 1.78476257738151 1.65341778183748 -0.0837238296284153 -0.354558526545831 0.567014085662734 1.63503622802180 0.00720695691035868 0.528132753180724 0.0891115979124452 1.65819571972511 2.35871070714265 0 -0.545881498289362 -0.260795658625741 0.0233613089053626 -0.182805072574978 0.279649824278833 0.224079931986034 -0.999026096904026 0.51110248576572 -0.0746613913640373 -0.238327815910639 -0.92666786765492 -0.616809377094521 -0.41194250730003 -0.283963258902078 0.76624828736172 0.71739007657114 0.0588336842564198 0.628314720844211 0.832960776470973 0.564073325969675 0.346341622110864 -0.920063205762154
Rv3879c -0.512668566416021 0.646177331262088 -0.809081610343052 0.730404640588302 -0.12837939922388 1.87846778614758 1.65557251816576 -0.141429606264790 0.124558469800071 0 0.309755586444831 -0.505670310320603 0.349091712491517 -0.270150634072754 1.57016893170184 2.21868204360282 1.63484859527629 -0.873809472244724 -0.958334269454976 1.27952675670464 -0.790621268632536 -0.107255650270391 -0.718740938882486 -0.652898416835995 0.655801460331248 -0.955176372387728 -0.160085595749448 -0.750892456338213 -0.439519646074277 0.260876889391836 -0.362774139739221 0.336990454390634 1.79104807530974 -0.264696527973864 0.0811116617540238 0.835982600844335 1.08852965047013 0.768572937204306 -0.0672516536460153
Rv3880c -0.642874534570961 0.545905164725927 -0.474252724812672 2.34905164601108 0.567412867620934 0.782057320404608 2.30962385715541 -0.520104982994024 -1.04230599737283 0.120996430072159 0.246713290636798 -0.231074163805982 -0.279537903119206 -0.19641416776181 1.69143787226306 2.79270922638126 1.36466826920137 -0.395496956066894 -1.03949623944190 1.79958379863062 0.103917457849115 -0.719481082873004 -0.615300033894918 -0.357972447979597 1.46931370432246 -0.601917701867661 -0.0190812189596824 -0.181107596185050 -0.661324986780829 -0.289606686935499 -0.728356655487255 0.529564925175191 2.69763748179851 -0.363443155657258 0.575099988854602 0.482852076905019 1.35738400847893 1.47173608343565 -0.20037385185678
Rv3881c -0.625546566321046 0.449978065297581 -1.02456834720481 2.06551877167542 0.339467527352684 1.49499605777196 1.65720535003014 -0.732965609745358 -1.30272379310305 -0.154092789069605 1.75695506958450 -0.0767573836724836 0.87759540976087 -0.643908607781845 -0.119718789546760 1.77585373206343 1.17796322396175 -1.49025019541012 -0.461944536844233 0.374862922155092 -0.303808423277603 0.308781004389612 -1.54625157886698 -0.637706674679977 0.407536708209374 0.107939290904872 -0.374060213088295 -0.877676668860008 -1.39392102512580 -0.492508416675324 -0.136213477956986 0.439307655679039 3.50173480636581 -0.651580302090956 0.589415298832037 0.83519907017468 0.15321375630807 1.25211502257367 -0.55690250672529
[+] Show/hide bicluster #35 motif PSSM #1. bicluster 35 motif PSSM #1 Mycobacterium tuberculosis H37Rv 19x4
POSITION A C G T
1 0 1 0 0
2 0.818182 0.090909 0.090909 0
3 0 0 0.363636 0.636364
4 0 0.272727 0 0.727273
5 0.090909 0 0.090909 0.818182
6 0.272727 0.545455 0 0.181818
7 0.636364 0 0.363636 0
8 0 0.818182 0.181818 0
9 0.090909 0 0.181818 0.727273
10 0 0.545455 0.181818 0.272727
11 0.272727 0.545455 0 0.181818
12 0.181818 0 0.545455 0.272727
13 0.090909 0.090909 0.818182 0
14 0 1 0 0
15 0 0.090909 0.363636 0.545455
16 0.181818 0.181818 0.272727 0.363636
17 0.090909 0.545455 0.363636 0
18 0 0.272727 0.727273 0
19 0.636364 0.272727 0.090909 0 [+] Show/hide bicluster #35 motif PSSM #2. bicluster 35 motif PSSM #2 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0 0.923077 0.076923 0
2 0 0.230769 0.692308 0.076923
3 0.076923 0.615385 0.230769 0.076923
4 0 0 0 1
5 0.615385 0 0.384615 0
6 0 0.153846 0.384615 0.461538
7 0.076923 0.923077 0 0
8 0 0.230769 0.769231 0
9 0 0.307692 0.076923 0.615385
10 0 0.076923 0.076923 0.846154
11 0 0.384615 0.538462 0.076923
12 0.615385 0.153846 0.076923 0.153846
13 0.384615 0.615385 0 0
14 0.384615 0.230769 0.230769 0.153846
15 0.076923 0 0 0.923077 |