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[+] Show/hide bicluster #18 rows and columns.
bicluster 18
Mycobacterium tuberculosis H37Rv
20x37
[+] Show/hide bicluster #18 rows (genes).
bicluster 18 genes
Mycobacterium tuberculosis H37Rv
20
[+] Show/hide bicluster #18 rows (short gene names).
bicluster 18 short names
Mycobacterium tuberculosis H37Rv
20
short_name
[+] Show/hide bicluster #18 rows (long gene names).
bicluster 18 long names
Mycobacterium tuberculosis H37Rv
20
long_name
[+] Show/hide bicluster #18 rows (NCBI RefSeq gene IDs).
bicluster 18 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
36
[+] Show/hide bicluster #18 gene upstream sequences.
bicluster 18 upstream sequences
Mycobacterium tuberculosis H37Rv
18
upstream
[+] Show/hide bicluster #18 columns (arrays; conditions).
bicluster 18 arrays
Mycobacterium tuberculosis H37Rv
37
[+] Show/hide bicluster #18 ratios.
bicluster 18 ratios
Mycobacterium tuberculosis H37Rv
20x37
GENES Amikacin Amp Antimycin ARP4 CCCP Cerulenin Clofazimine Clotrimazole CPZ DCCD Deferoxamine DIPED Dipyridyl DNP DTT GSNO_CFZ GSNO_CPZ GSNO_menadione INH KCN menadione Mtm Novobiocin Oflox Palmitate pH4_8 pH5_6 Procept_6776 Rox Tet TLM TRC TRZ UV X_109 X_121940 X_124196
ORFD0293 -1.26931584523694 0.201014976945495 0.588430929893747 -1.89653777326763 -1.94226858835427 0.534252605088824 -1.02650482278024 0.0419251604471013 -0.504643747772608 -0.359573110443997 0.123256533141847 0.168113803355480 0.292020143595821 -2.68187190872667 -0.204792064625215 -0.354281312500526 -1.07291157186963 0.367783948474063 0.776247754674847 -1.17061784355122 0.72757085586387 0.651534702670854 0.481605557765117 0.434387322673702 0.145995902909686 -0.802771106306954 0.97489395582453 -0.38891353549173 -1.31979321732699 -1.87494584741201 0.530380499727402 -0.526085428981998 -0.549903628399332 0.775095104314315 0.503239069192462 -0.0903896037823236 0.169288578630216
Rv0483 -1.11558364714404 0.381195642892259 0.437980195804864 -1.00508197353439 -2.37239095473060 1.09139793431979 -0.231321003604509 0.49417796577201 0.0620418339221701 -2.7146444945206 0.0598220243776037 -0.163062101066724 0.458453463725445 -2.99056152545903 -0.167873718298788 0.135953680010912 0 0.961872171524035 1.04044522673210 -0.973598273008826 0.883045391861483 0.549002491797372 0.0902030162828164 0.0817841599561346 -1.44598859696811 -1.18971522300265 -0.632193169192034 0.363340618351237 -0.00511728294051832 -1.11474665132245 0.465138670894029 -1.58781141737793 -1.38040982179578 0.606055955673666 0.169638686332282 0.381205697958746 0.292085651990704
Rv0558 -0.184838941858052 -0.0831041262114829 0.139628341904072 -2.35561394212800 -1.48396625769460 0.350124215002479 -1.20192990266679 -0.608289239347908 0.140351278934129 -0.925739403085559 1.09108861512642 0.271133624985202 -0.48477537688926 -2.18216666308199 0.0242800436393401 0.177783930541227 0.322524659593026 0.267963901897742 1.02105720151840 -0.322587185012347 0.0777476649422058 1.24115042862854 -0.12261798657048 0.977563820679365 0.546797986632767 0.268555844304878 -0.0859940074249732 0.389909256862514 -1.27459479433592 -0.666979408593216 -0.697193475142308 0.357430495478155 -1.17443679285445 0.902089110703956 -1.19383150190552 -0.493640798412176 0.839215196805845
Rv0795 0.384412909763506 -0.336852426517274 0.570616888766217 -2.76009835533527 -0.94395458131965 0.166770018324005 -0.0435176526884053 0.253057553878525 -0.397838403526542 -2.79695999161886 0.322252471975960 1.42189194482211 -0.682681467807145 -0.735177661903663 -0.682896004199948 -0.725893059506082 -0.836929792614249 0.0153347848536528 0.366020295580713 -0.79408157989946 -0.409263159232299 -0.0844508285161841 -0.961600463099276 0 -0.146463678730759 -0.258952159928646 -0.398613129779074 0.395565775795415 0.199637125202048 -0.696954798818041 -0.09852834019835 0.246802394105859 -1.30112374867428 0.237757688411424 -0.418138733851873 0.626349030703838 0.579838407377119
Rv0921 0.152829386919034 0.148158001479724 -0.202070287249000 0.865721967991735 0.342215669216635 -0.0919777881582366 -0.756750107115687 -1.0898068570573 -0.588782982950646 0.150011598773889 -1.06567416370107 1.26301490642851 -0.328909688869480 -1.26851019367709 0.185140065145019 -0.155499949542237 -0.319660866095273 2.3602462352095 0.0142858057668361 -2.07801369425592 1.63807994775949 0.616858088157596 -0.883442817608135 1.41836185261024 -1.99785458661814 0.63538237300592 0.739568224496031 0.565246914383538 -0.362468724272154 0.0376737159872372 0.448921795683617 0.283805548341448 -0.556567678667689 -0.205994066250144 0.195516657691595 1.20118096397585 0.190194210221682
Rv1230c 0.0281218534888323 0.671125862346467 0.323655138479772 -0.911107874449227 -2.32260444938999 0.276594102333379 -2.38830459346963 -0.704679732338582 -0.581213932025348 -2.90760717446703 0.736801114380967 0.67657535934505 -0.769520205382421 -1.27729186204711 -0.963138296095208 -0.666057335366754 -0.935871901160469 0.174836816855493 0 -2.31824193624173 1.10237721028754 0.547518152129464 -0.961370926516846 0.186443062115438 1.06710246210217 1.08795241887873 0.373472821947652 -1.14638497355014 -1.09325369317738 -0.291917994270574 0.175051367770581 -0.485821734861736 -2.08406496455044 0.274340628485190 -0.0642267948202479 -0.88657405263337 -0.273568227174631
Rv1254 -0.759952377170876 -0.226425202296638 0.0511098760798195 -0.76805963513255 -0.75458321994907 0.674929211114629 0.414653080384976 0.609414739052131 -0.060852207054309 -0.249638079672950 -0.0347444607088084 -0.612529848006144 0.215825135231877 -1.14870723444712 -2.30534020899098 0.414653080384976 -0.107196209605971 -1.41070440291455 -0.618143616723919 -1.26538962046682 -1.02670465167967 1.20383361263822 -0.646092149080763 -0.390236486655685 -0.476998189276869 1.29078817565027 1.66954659264597 1.19978743440067 -0.683721142551297 -0.7274477192228 0.458812010370261 0.8005375718823 -1.00884578721745 0.681900385056027 -0.216346794779494 0.339636081951779 1.18353096719864
Rv1380 0.313209912827669 -0.094227455050494 0.704487888012024 -0.655250032981898 -3.06968645756597 0.4807813358136 -0.490866797269210 0.376120285906882 -0.801154852556283 -0.812781615766522 -0.0657911331711011 -0.653577492678368 0.314887036596418 -1.39262511802284 1.38780409507205 -0.375663789980643 -1.4311590742154 -1.32286102113828 0.540543758592955 -1.31059183164140 -0.607323214215476 0.494748738755738 -1.16631843312313 0.127840983888406 -1.02891804453043 0.0762580123601031 -0.0182913751910824 0.549113544396343 0.434386595653649 0.895126344880817 0.0456442806229057 -0.276634337662394 -2.51203345051661 0.449352689201193 0.461414050961662 0.188522315148558 -0.0306852200269982
Rv1542c 0.895842630807693 -0.0372169683990582 0.133216640687417 0.82135251699816 -1.68075744260614 -0.088026921104786 -1.20331513455923 -0.243796285389856 -0.0630384513299279 -0.517329380178841 -0.708593918004224 0.575095339245236 -0.441711567795506 -0.967990124643123 1.94882926324218 -0.409154985454628 -0.0206749564326243 -0.366704952252699 0.0174961992346122 -0.923797730947158 -0.331383453653712 -0.239654284749232 -1.22246919830672 0.33317430902499 -0.164627865538914 0.772968299961789 0.565084611549844 0.394082018637846 0.246426373323008 0.960580431424175 0.473394815144416 0.517447681297739 0.193606122272782 -0.505721709168254 0.68880184489424 1.34466970730449 -0.379566248879422
Rv1707 0.419473055346549 0.24979841143323 0.0378165225854523 -1.10301081598881 -1.99902475625294 0.145615896992452 -0.668382644022475 0.247906958367400 0.312319814133583 -3.11114176601382 -0.471845647791192 -0.457714438576615 0.191790373985419 -0.785660702925052 -0.165782913434322 -0.736626279118779 -0.886522530839928 -0.116750529189899 -0.244777706515896 -2.87324086256435 0.0787249412901207 0.176819517517981 -2.97859319541848 0.126861134523717 -0.894160454261003 0.178974527178821 -0.0664665524792402 -1.24683724338935 0 0.67003328133885 0.119301593778547 -0.695176471367427 -0.892568839389105 -0.212173174994717 -0.602965808285201 -0.0373254369908736 -0.282404676851053
Rv1873 0.328547156996045 0.697522359485776 0.34965355748714 -2.21233120203370 -2.21205299611043 0.535755360374834 -1.68124638974895 -0.92054227469757 -0.105090993220511 -0.706957095337027 0.473682896738112 0.133654518073869 0.404739414096808 -1.11621661404331 -2.14122018891909 -0.970960785361952 -1.27979250161826 -1.13491397785224 0.440388069926787 -1.71200879205789 -0.0808775260998938 0.180805411494704 -2.28697724238468 0.498467708896353 -0.077285654747262 0.648745961522737 0.515690780158444 -0.331440901665197 0.255120633115833 0.076790203676426 0.44835729293004 0.0793455859895599 -1.63713106511020 0.266985320357261 0.345635799084357 0.358423580028258 0.282217291711179
Rv2428 -0.319835026881228 -0.00542367597812491 0 -0.8463600245892 -0.749291674026284 1.59151347128594 1.21676035438098 0.438659684594281 -1.12293829850293 -2.01733940113983 0.369709250877964 -0.0555682352425507 1.48329647261979 -2.27359905991137 0.844305156961354 0.984737384340491 -0.827915120164421 -0.139240310207395 0.934884250291147 -0.721542270898126 -0.305828606718178 0.562760757580331 -1.30067301990510 -0.240993646996862 -0.702467222653908 0.323884600286991 0.970454990981787 0.635080722485703 0.602200573257414 -0.583636088348315 0.499264822373949 -0.899872365858639 -1.67969972374399 0.287296873698395 -0.0956046202720978 0.454949731553677 0.350839163890596
Rv2429 -0.656590644132932 -0.00695131088649242 0.0132214352571604 -1.21344408867969 -1.08883709364168 0.955575782455099 0.865814152411024 0.418935421122058 -1.04153285970883 -2.32199714567616 0.125639510959494 0 1.23312736293026 -2.70624595919191 0.275416835641118 0.79268749140207 -1.36510817661798 -0.335506452301104 0.507750530431828 -0.951459573237557 -0.456985100897138 0.416518397860365 -1.55713898698985 -0.254535031919237 -0.94083769913722 0.172267317180109 0.740285894983871 0.456728263725649 -0.48756800686424 -0.771571972120914 0.350165148091393 -1.26822260928166 -1.82188243518324 0.269190984044646 0.174282017322262 0.448561253637739 0.250860952865132
Rv2459 0.125953480604325 0.194179594915126 0.267253486934845 -0.205710389583383 -0.748375767712633 -0.4542578894166 0.156782337719762 0.414078773759631 0.0131273342804426 -3.36934703800622 -0.0968013494634657 -0.0811970706105194 0.599442582765922 -2.35213822336319 -0.369771854556399 0.896189475054214 -0.388142373616635 -1.53544563038468 0.468839092761715 -0.481976188869899 -1.67937411576689 -0.144428911672325 -0.954479098503072 0.333223740126642 0.907851201730757 0.38322320423626 0.495828735040041 -0.93220002893757 0 0.591520363142188 -0.192716954612028 -0.32461895755951 -1.83092011683954 0.0379840992810156 -0.158560100454163 -0.0604799448558333 0.0571732840128108
Rv2510c 0.263455589296502 0.623873616313061 1.10686609630574 1.1984025905682 -1.60032078623318 -0.471708766626477 -0.801179550766154 -0.582994131654038 -0.298266355394276 -0.264258354552834 -0.0747048929566265 0.764821538488066 0.259917437017922 -1.21458039591262 -0.506027994317458 0.0806775606177219 -0.109817970667256 -0.554335477826816 -0.473590353324393 -3.94641029182857 -0.198579382319061 0.763571371359613 -2.07303975328362 0.723952367049923 -0.785607549277207 0.45440914812148 0.896377760832752 -0.907267536577626 0.0633894149689071 1.01170421036389 0.715862242376507 0.419397021665508 -1.05928858160702 0.923524808431927 0.490893112353962 0.170967742088017 0.114818277335335
Rv2700 0.240427672897913 0.8891467011922 -0.214963787931089 -0.0535639537911042 0.0588574585999125 0.467734650734530 -1.54968029732424 -0.11917908582669 -0.781721862279413 -3.18971565459443 0.376064216334818 0.617433106525604 -0.478469545830237 -1.88507819017159 -0.500460190469033 -0.191864413503703 -0.479693218915548 0.174669935352669 1.24341097962560 -1.02844270120455 0.163684821943633 1.42008534783110 -0.676615424919322 1.57124424209572 0.0855558097234942 0.553998499456112 -0.00432627976375335 -0.434626643121145 -0.961461718428933 0.916172301739053 0.978118117990708 -1.46785543569055 -1.6119449555833 1.89380659129282 -0.179027109422429 1.76064095519024 0.439850587723662
Rv2732c 0.215013109075732 0.326675249333999 -0.143620303701930 -0.26938290465291 -1.22682188421016 -0.134535545400380 -1.37173551218289 -0.454596295761566 0.0875277825114592 -2.37843435354807 -0.112689454197591 0.975271346433136 0.0946138030678186 -1.61596047083547 0.535004233336 -0.548538361919831 -0.164681925406614 -0.157435551333320 0.0611588517139714 -1.97768278125620 -0.0792978831201694 0.79143292118436 -2.37858813410713 0.912846260727668 -1.60931341360936 0.15050116679492 0.511254236722249 0.451191693802241 -2.16695221563605 0.277489948494712 0.805042377682892 0.249749082061797 -0.946219996977444 0.253437405596519 1.03107618531101 0 0.169013141167345
Rv3027c 0.424819452014167 0.227135615118763 0.202278062798957 -0.680522253909695 -1.03614927197060 0.0657779863647169 -1.86515340616771 -0.759540967605826 -0.508695205439818 -0.663634514439081 0.120110077991904 0.845592656147019 0.246677604602702 -1.48398041462598 -1.23328413968259 -0.262567634523451 -0.304757678985337 -0.120586867381570 -0.417496945996302 -2.24370147600876 -0.303789379471769 0.772740343818515 -1.43976305788642 0.50843375262693 -1.33225325994243 0.087315342561433 0.362211146717875 -0.287597850054577 0.650139816199631 1.85661418693638 0.620313720612971 -0.0532806037252341 -1.11754065579922 0.678248432721792 0.501632500998035 -0.524368358607325 0.0598093698486069
Rv3362c -0.362347979519011 0.855973019716553 -0.0170082967558358 0.751143562015913 -1.28585240587016 0.032309847703123 -1.13844766951863 -0.314683358270873 0.135552377894564 -2.75240851789352 -0.132605735527157 1.30965362854747 -0.384850304554958 -2.12147335294108 -1.08790171825788 0.926171677130755 -0.596626045065348 -0.379156569978372 -0.258925290443915 -2.50161363359506 0.101480484050772 1.43562123141984 -0.862598092913575 0.656614110297325 -0.832403078872095 0.791414697598456 1.09294919936932 -0.516563188169936 -0.802234863084486 -0.44082886560975 0.346109545673884 0.588515298642686 -0.190860714154386 0.724484458825363 0.770057982164672 -0.300291948122539 -0.407930439718512
Rv3392c 0.373537165405613 0.398088631923648 0.0975412661474737 -1.50373389746645 -0.857941316423584 0.937595620909018 -1.88758885167810 -0.458180894074934 -1.12608195377793 -2.00549728100249 0.359015422998021 0.162955757291097 -0.414313533944665 -1.72739979232550 -0.277521083119987 -0.81540260506062 0.555641166160041 1.32805304263614 0.296291740424577 -0.877851831290537 0.529019443172619 0.712667315842626 -0.112427382490997 -0.177852444162640 -0.899617153297545 0.774622678855973 1.43015917612579 -0.324080835087842 0.690532572688118 0.0439217860408186 0 -1.65070873336929 -0.419850888614988 0.54129712833668 0.2496776625157 -0.158961523515271 0.515319200365424
[+] Show/hide bicluster #18 motif PSSM #1. bicluster 18 motif PSSM #1 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0 0 0.888889 0.111111
2 0.611111 0.055556 0 0.333333
3 0.111111 0 0.166667 0.722222
4 0 0.166667 0.833333 0
5 0 0.611111 0.222222 0.166667
6 0.111111 0.888889 0 0
7 0.055556 0.111111 0.833333 0
8 0.722222 0 0.277778 0
9 0 0.222222 0.055556 0.722222
10 0.333333 0.555556 0 0.111111
11 0.888889 0.111111 0 0 [+] Show/hide bicluster #18 motif PSSM #2. bicluster 18 motif PSSM #2 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0.6 0 0.4 0
2 0 0 0.6 0.4
3 1 0 0 0
4 0.2 0 0 0.8
5 0 1 0 0
6 1 0 0 0
7 0 1 0 0
8 1 0 0 0
9 0 0.8 0 0.2
10 0 0.4 0 0.6
11 0.8 0 0 0.2 |