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[+] Show/hide bicluster #3 rows and columns.
bicluster 3
Mycobacterium tuberculosis H37Rv
29x37
[+] Show/hide bicluster #3 rows (genes).
bicluster 3 genes
Mycobacterium tuberculosis H37Rv
29
[+] Show/hide bicluster #3 rows (short gene names).
bicluster 3 short names
Mycobacterium tuberculosis H37Rv
29
short_name
[+] Show/hide bicluster #3 rows (long gene names).
bicluster 3 long names
Mycobacterium tuberculosis H37Rv
29
long_name
[+] Show/hide bicluster #3 rows (NCBI RefSeq gene IDs).
bicluster 3 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
54
[+] Show/hide bicluster #3 gene upstream sequences.
bicluster 3 upstream sequences
Mycobacterium tuberculosis H37Rv
28
upstream
[+] Show/hide bicluster #3 columns (arrays; conditions).
bicluster 3 arrays
Mycobacterium tuberculosis H37Rv
37
[+] Show/hide bicluster #3 ratios.
bicluster 3 ratios
Mycobacterium tuberculosis H37Rv
29x37
GENES Amp ARP4 Cephalexin Clofazimine Deferoxamine DIPED DTNB GSNO GSNO_CPZ GSNO_menadione INH KCN menadione mercaptoethanol Min_med__succinate_ Mtm Novobiocin NRP_1 PA824 pH4_8 pH5_2 pH5_6 Procept_6778 PZA Rif Rifp starvation Succinate TRC UV Valinomycin Verapamil X_109 X_111891 X_124196 X_59 ZnSO4
ORF04275 0.441637281081443 -1.88680782558483 -0.296626526446584 0.701180029378245 0.4820499675697 0.0224598890886706 -0.0298282283260276 0.057399373411871 -0.039612437280381 0.53205161316143 1.17665605772204 2.16764403582361 0.349055618102551 -0.347679205703495 -1.3862611842692 -0.500484764191575 0.0239012477376862 -1.09740419823465 0.240708200915961 -2.23793153480472 -2.32172988872742 -1.88014555873955 -0.305494731713494 -1.22497467508744 -1.64762122509445 -1.88257556647689 -1.51630836864832 -0.0814917175956398 0.532248178535511 -0.119407467818952 0.466775385275369 -0.16919607701807 0 0.393504166619129 -0.146006219006967 0.226222279920049 0.210193138439995
Rv0005 0.576697817291938 -0.584045487403002 0.496091449783105 0 0.469428605670127 0.208838759151232 -0.113856449134165 0.782420350690118 0.265281945961426 -0.192533009609710 1.29696394115077 0 -0.214691317607804 -0.327130828882997 0 0.133691834619153 -0.940584037654088 -0.246522573415938 -0.744502306355851 0.185565302016080 -0.65348722962651 -0.159568780546142 0.366307329027974 0.311711318305506 -1.51964416015569 -0.226192891335601 -2.55060164997512 0 -1.40895408923640 0.321994022841045 -0.762052051180566 -0.199603780674848 0.0308040160565215 0.432871480056886 0.80423849007248 0.532473729176040 0
Rv0053 -0.206608921759341 -0.6824554949679 0 0.00961706434429916 0.225736174022839 0.453582201019025 -0.150486576279567 0.616043927248755 -0.0727850764544917 1.00810071014430 -0.0248269740163998 0.00961706434429916 -0.0342803002699867 0.411999719798303 0.00961706434429916 0.329755808997723 0.00961706434429916 -0.13138923642979 -1.07396928586308 -0.816982806265124 -0.987507443932451 -0.447274614044658 -0.270499253438156 -0.298366227707858 2.01817267524744e-05 -0.222469718777002 -1.97255790066092 0.00961706434429916 -0.365601176467404 0.527565264489194 -0.389898803719267 0.0766813167366728 -0.168872653028613 -0.0828821078517154 0.125323959318651 -0.246205623670504 0.00961706434429916
Rv0054 -0.30754187448055 0.0240566941235091 0 0.681076739579643 -0.212833280774366 0.75574316726428 -0.141434016233072 -0.621039433863567 -0.581842616486931 0.13670847200617 0.34078715538429 0.564847322873711 -0.125913057575398 -0.425541180606256 0.79465206159568 0.853453558154366 -0.499243511255458 -0.306690815474284 -0.73468551509087 -0.358468957340024 -0.0416785152179853 0.0916139653956322 0.500464082055939 0.351117217947427 0.51841351001952 0.146716422588942 -1.67068418768959 0.346977831907790 -0.0460589174488535 0.746483988189209 -0.455820011661218 -0.879653281142187 -0.317764952516897 -0.342209909825906 0.194060039016329 -0.279151480229362 -0.49484026818087
Rv0243 0.736568901652742 -0.789467545356611 0.688316773011682 0 0.415582813456249 0.518550106878056 0.435933009013188 0.444741815207101 1.31302422906667 -1.25707392638846 2.87244029921382 0.605632671580355 -0.845660697237892 0.53298652200418 -2.04591919111674 0.496456525807524 -0.959212877032903 -1.46769192160229 -0.547035687263505 -1.18904679513947 -0.695450926796027 -0.120674394529126 0.959831540190751 -0.216893209397165 -0.970064701515236 -0.858279306654185 -1.19398335889318 -0.147644636790639 -0.325857769251020 1.17246480538827 2.48125360310186 0.737107322420214 0.317245161332765 0.470525374575138 0.715913783381833 0.393440715654134 0.162176141542759
Rv0290 0.066958131260487 0 0.372586519993687 0 1.44156941041615 -0.767565094907202 1.49841527215056 0 1.23810751479608 1.38870916373792 0.486591818826903 0 0.876287017417467 0 0 0.42414360892303 0 0 0.0838627566161906 -1.16753944593976 -0.63161419308684 -0.87142712795891 -0.544649557438991 0.371757303710462 -0.370169419451416 -1.13397813612681 -0.806018868925557 0 -0.282834197386087 0.556186252258943 0.163201423924353 0 0.168795965905827 0.0990964928465 0.441796721334642 0.653405648342905 0
Rv0291 -0.0576293997179557 0 0.374301737599292 0 0.812507932953698 0.199104305699033 0.498039665450858 0.330239429069511 0.224965479645684 0.693043304483835 -0.250867159685131 0 0.329842131671391 1.70919965562744 0 0.538227005400207 0 0.695875497160786 -0.802432815058246 -0.217963336178689 0.373845496020598 0.288497514986046 -1.1358492446536 0.307862661161397 0.301425190931277 -0.543289565846332 -1.24056730594971 0 0.105728632621112 0.248275742847769 0.0830058815749414 0.812136714205315 0.0270491004268656 -0.311780508878243 0.385401260706306 0.186156778717783 0
Rv0338c 0.404808911393807 0 -0.0406247642911474 0 -0.98339667801003 0.374351889920858 1.14008695278533 0 0.270184182004176 0 -0.512804954932057 0 0 0 0 0.865373975619277 2.14742040893734 0 -1.46119202582817 -0.287890414905133 -0.619738476249251 -0.479987386972673 -0.71961825818704 0.141889025536436 -1.57305829688879 -1.79970984326022 -1.51600386088690 0 -1.31691723318513 0.775720720229682 1.27968191832711 0 -0.351352721313428 0.566658247519567 0.319803909042449 -0.485601763325752 0
Rv0542c 1.01823236133110 0.167936049734752 0.308336291571500 1.43689778783108 0.501294064545427 0.228941167425519 0.597205756502437 0.869611273294246 -0.183363178809246 -0.301773069523281 0.296466562992243 0.424264839220278 -0.71633083544437 9.10418773879929e-05 0.724939322747407 0.474945404695282 1.03780572875956 -0.39617100901273 -0.055975721230909 -0.624700909655258 -0.234626131809887 -0.90133704156642 1.07874305448893 0.177415817289492 -0.551859571217076 0.156759887532509 -2.30314853510546 0 -1.25786765278369 0.381766374991046 -0.44626407058018 1.12654209502936 0.681053155729311 0.84492084594274 0.645676480351403 0.621669220594783 0.654607183618583
Rv0605 -0.655819812816449 0 -0.377940901620783 0 -0.401475274956528 -0.124882075083989 0.542359218636833 1.49684508792171 0.443065415688784 0.558327199285398 -0.229735512073743 0 0.139369820987702 0.876505857251288 0 0.196111153843763 0 -0.371909840930641 1.66731450897909 -0.815917080764893 -0.957454622188344 -1.00484302203197 0.605879669709584 -0.132868774461092 -1.12687555257712 -1.15129911272902 -0.404740532655839 0 -0.465496814829384 1.62301611364563 0.0268796124152410 0.528962629257955 -0.72968572181468 -0.269309501271334 0.0901179341802274 -0.315301182006834 0
Rv0606 -0.402674074740819 0.90093936389759 -0.108361103685197 2.09459426587634 -0.137284070371764 -0.82817671641088 -0.0846431566695403 -0.111407762424229 0.339154816656545 1.74493208998095 -0.270898063354684 2.18992756585434 1.5950928444516 -0.106910165339872 0.179691379803963 1.19834162876594 3.22340665121847 -1.03986139383564 1.24534655358771 -0.339036701296243 -0.243745620303232 -0.371483335979013 0.148733362486275 -0.193401806761932 -1.24364491226107 -0.901833898549274 -0.799416576115738 -0.00826445715595633 -0.271189046190585 2.36660807839913 1.08456842557272 -0.135490699989672 -0.643760077313415 0 0.102019068339072 0.0497947783189002 -0.0710422698312174
Rv0651 0.661099310256769 -0.933050697751887 0.716150797424886 -0.85729236173063 0.752358792545412 0.486417076874801 0.523354621898269 0.726932624942315 -1.13115089918906 -0.102438420067825 0.877205510058027 -1.23980205468236 -0.188270730436272 0.0483291718306823 -0.439998049717302 0.847027557152424 -0.391263181199075 -0.244645026294631 -1.23860985193145 -0.675735855347277 -0.0855446452192313 -0.299395079806775 0.52968360615464 0.382887050258274 -0.0917321473306583 0.439078595239019 -0.769745863322447 0.233666613771697 -0.205333933084016 0.805598729798013 -0.317172266229370 -0.0401516482193863 0.535711663827427 0.548273416845694 0.125831118021369 0.459883123136746 0.903283166255386
Rv0688 -0.0399095211007797 0 0.0938947021627282 0 0.801065549541673 -0.785421274850537 -0.322915542069402 2.78105001367294 -0.151635349162748 -0.0371612764233289 -0.823691239605747 0 -0.67157755259748 -0.0108828686598051 0 0.862005647376373 0 1.15966096032566 -0.579411355082112 -1.23908195386043 -0.471208454739624 0.0485788473735799 0.158516615533099 0.33310187658992 -1.13311038118327 0.688536923098836 1.48883973178498 0 -0.296418526331869 1.20848187222168 -0.879847707595078 0.647752883614575 -1.24978098711205 0.174541967747850 -0.202442024343026 -0.229845784839463 0
Rv0709 0.858875301218433 -0.0773911435150463 0.86031631791623 -0.235636382732807 0.612826472683317 0.954999389187907 1.02686027914642 1.00267671920219 -1.32905666119609 -0.544795018080664 1.35016354410935 0.732184777604275 -0.721503177721246 0.953955068882988 0.739324888605277 1.01162871980743 1.09941280065789 -2.21584664962949 -1.45128348619475 -0.87426339234719 -0.150380771728561 -0.508540527300646 0.141516687051403 -0.00554645669470844 -1.63702934023785 -0.47361177260958 -2.86780742678086 0.764330400683955 -1.21109914319674 0.64054512894568 0.930639392783748 0.975598551558313 0.154322492542027 0.442453129409011 0.186403656865171 0.175054614425725 0.687331643791164
Rv0829 -0.312150339518903 0.130773496514707 0.674303631034689 0.130773496514707 0.0310105956722057 -0.170188653992967 -0.51220762683103 -0.913556073015421 -0.171158707553477 -1.30392490787148 -0.087551843061599 0.130773496514707 -1.15144289374023 -0.506534190362791 0.130773496514707 1.26615311361058 0.130773496514707 0.504255689892959 0.677686924673572 -0.296767035652695 -0.393577458871474 0.0275848455355382 0.440968032858056 -0.326283052801611 -0.122129383583473 -0.709320969159044 -0.137453577756646 0.130773496514707 -0.0408550183600077 2.06011976881534 1.13073075434536 -0.329583682133162 0.0297037510190799 -0.136061085466245 0.307410046789933 0.063365540904892 0.130773496514707
Rv1015c -0.0260014889782216 0 0.456581400945535 0 0.101049465940895 0.231106596865525 0.610664701805411 0 0 0 0.407546099442684 0 0 0 0 0.611199703779859 0 0 -1.78639711618802 -0.465002721988605 -0.275025976325680 -0.069617526027935 -0.624974530226745 -0.583655350045753 -0.231058661640617 -0.00536654983987009 -0.853479237416508 0 -0.764666747363942 0.263418036564301 0 0 -0.0863025497448291 -0.105727632257134 -0.349918737721554 -0.380529435549393 0
Rv1094 1.01130950766870 -0.757877574748038 0.330008890454906 -0.144861206608992 0.337347002551426 0.583186835663809 0.191020616122043 0.603332147085332 -1.99430947883534 -0.174584746348336 -1.47002070353651 0.688711827245508 0.169099500014298 -0.956198082619071 -0.35942260330894 0.0560401344865777 -1.08231195331312 1.05123756635887 -0.623485585500548 -1.42037747406945 -1.13887699598061 -0.72347539006177 0 1.19306805754505 -1.05960410139736 -0.56418920999562 -1.61854537181508 0.389482626862169 -1.44325554033942 0.398099064827982 1.85629782926372 0.289350094483096 -0.0740612631190644 0.588627946133129 0.882197646051819 -0.621502712167642 0.355077685737088
Rv1122 0.191646738486449 0 0.249898975289275 1.76855286763390 -0.076883372372531 0.0709332469196 -0.201643737149706 -0.243541319068893 0.804626861613183 0.361713632138764 -0.344684902436191 -0.0155231506004552 -0.76498815916006 -0.341100539031982 1.60404759379273 0.532294856561739 -0.986248432406135 0.124124887593360 0.0906601728658562 -0.151946063694917 -0.0678407373393567 0.536331566601134 1.12746805191766 0.0634665333441051 -0.8881651667899 -0.678972464572683 -1.35079450076345 0.544339990753923 -1.03301503320769 0.745406870332537 -0.524152070924317 -0.399580321150985 -0.0529571468866858 -0.294788769327364 0.356660947121047 0.346747042260199 0
Rv1324 1.46456643022450 -0.469905296294377 -0.243575210301611 -0.99244456713728 0.944051028477474 1.32391339330764 -0.258386987340860 0.385245263122773 -0.179648230557929 0 1.76923222171334 -0.262860732519592 -0.300789878491741 -0.264417295390212 -0.789524386770685 1.85755093150789 -0.689109409701292 0.213081293645470 0.594353514831568 -0.650149601296214 -0.597780247323925 -0.00213174961564007 1.57696828452205 0.649966725655303 -1.11965191342196 -1.47571422956722 -1.19489441715925 -0.914178749445173 -0.759056950154788 1.99749504291312 -0.379369071187123 -0.692118740269963 0.362118625542597 1.14854739303193 1.40978168754076 0.392934400692667 0.706622511764122
Rv1344 0.513314312327021 -0.216958726104659 -0.322247908891251 1.26865012713029 1.60314384847193 0.387118775111814 -0.329650816950626 0.259419831331472 1.51324294197 0.186800226278542 1.02202011061914 -0.0923716006676325 0 -0.220701735784315 -0.354790674814958 0.947496814104521 -1.06378673897625 0.343210963964479 -0.674828024454086 -0.913857420342659 -0.159374831989736 -0.501439004959971 -0.195030918095374 -0.83337891709385 -1.62809973609534 -1.08538111760749 -0.853535337640293 -1.22359087353008 -1.32237995783470 0.952221054534281 -0.407095082298562 -0.198421388623238 0.239215320764971 0.194581381873321 0.791689581035727 0.219748831656406 -0.051439284824883
Rv1511 0.536343334950926 0.796891694353316 -0.247233233041883 0.120920723052982 0.140633575033240 0.185391183962209 0.0549235272187408 -0.303584086656936 -0.66299593402408 0.0850683371296253 0.157269980730656 0.082455302061943 0.186425657875689 -0.0413306536750340 -0.0932089126364913 0.101974136032230 -0.104455466690876 -0.296769395762837 -1.06806973265828 -0.333488803784011 -0.213386930580658 0.180222733961565 -0.0801793573541603 -0.197672843240463 -0.28015001585357 -0.974779832694896 -0.308605589368013 0.427987039453934 -1.18809081663559 -0.116588676596220 -0.438832150850311 0.127348747217608 -0.109240893058386 0.260247289654129 -0.262775728041028 -0.312671043243094 0.705441878050298
Rv1836c 0.442429808425752 0 0.80325878305386 0 0.421158968202159 0.637883875822834 1.40942635540723 0 1.03558149266986 0 0.981990369156653 0 0 0.109527691369088 0 0.901853011310227 0 0 0.286450050046034 -1.09785629753561 -0.561916518490536 -0.229155777821554 0.540118347757452 -0.191845784070809 -0.321732383141661 -0.74724676949922 -0.256224350689493 0 -1.09118644758310 1.01920114754841 1.03974728054234 0 0.576936422645274 0.535013540512792 0.55339979418637 0.584260272652713 0
Rv2287 0.819569085446206 0.59417973421029 0.414935595150967 -0.0754792937421934 0.384314353261578 0.827270671804272 0 -0.0916440342692096 0.207090611675865 -0.994601170890226 0.920523017643765 -0.490133690169187 -0.71777031679433 -0.45018276992425 0.180449219986531 0.242166709372649 0.117247810452969 1.25488478730233 -1.54372098630907 -0.83912260031045 -0.287734327378034 0.145695520939879 0.295130268986744 -0.656706115598683 -0.231392073540009 -0.747044575207853 -0.30819472011451 -0.145076019466141 -0.65979342654051 0.287146403850178 -0.742556100032831 -0.217131326719773 1.26968785442504 0.772028606608888 1.38838267683245 0.732285201631703 0.241653476956282
Rv2299c 0.332128848902125 -0.149911401806489 0.201837381382822 0.87189294715544 0.69306410597036 0.482703148725003 0.238693513135184 0.443813215725461 -0.659608467904446 -0.925657573089313 0 1.55325554117219 -1.55756046053469 -0.388695238692955 0.872784637245225 0.733705792136397 0.835937508256063 -0.495522067378946 -2.02759345429470 -1.03679849469179 -0.65070190046348 -0.293868713681786 -0.600405480004573 -1.53948217234401 -0.730658393039953 -0.815144490701205 -2.00956395697668 1.05491732419157 -0.991627881689271 0.145214550766604 -1.07542893382401 -0.247495595934205 -0.526314514350425 0.543269113443029 0.0188201849319466 -0.254743653376548 1.22581647945221
Rv2487c 0.00706917358145056 -0.105884091377769 -0.145539260440319 0.686054398897658 -0.382329534883233 -0.331719404767187 -0.0117000675810847 0.0346447962225774 -0.0428492253262155 -0.543096082256601 0.732028968867238 0 -0.560408572221386 0.0451533823372731 -0.538419850329648 -0.357280094788587 0.459053110333725 0.0694045983380812 0.387346759656046 -0.107259873370032 -0.98226079728294 -1.31541060721323 0.18604946664487 0.769290543710258 -0.71089439937024 -1.22229653436251 -0.737345091950 0.322267112782919 -0.849800091799215 0.440519114774082 -0.176059288215703 0.182964791736335 0.109803232287345 -0.453223311173335 -0.325142936196185 0.214667514875241 0.391299630404299
Rv2733c 0.280276981666735 -0.261378615232695 0.202209264850789 0.528368225193395 1.86233991574770 -0.032245225517027 0.155564430797752 0.258774936701144 0.101525258533616 -0.246230241646136 -0.0225620696761208 -1.09531060305972 -0.387347310264864 -0.396220917659317 -0.393565102992917 -0.238958049208062 -1.50507061012762 -0.396036460236824 -0.201307076199045 -0.719616298985031 -0.542961646889045 -0.38871580889026 0.666605582507338 -0.490429922321081 0.79194652705469 -0.0251780352378913 -1.0281776817526 0.419971789882949 0.965769272858773 0.202029279817399 -2.11884055429809 -0.0114334770607421 0.492155571021564 1.58290480059541 0.813488202802972 0 0.454617995925193
Rv2791c 0.245267725651665 0 -0.0109293367978728 0 0.0740563102060782 -0.419864935504768 0 0 0 0 0.812968479547301 0 0 0.762773347019628 0 0.924612490479521 0 0 -0.10587467332901 -0.611531361155196 -0.71229307274566 -0.631660360361114 0.510061209949597 -0.601130837877309 -1.2559104163979 -0.271665992715140 -0.851811360299593 0 -0.121961445437885 1.95892824019807 0.427358818377512 0.334490636209229 -0.275488058648711 0.0751318059592442 0.579097621305629 0.198588036160411 0
Rv2792c -0.309360289932568 0.0511272745985427 -0.21618454887055 0.0511272745985427 -1.00221666201040 -0.677457540922989 0.525978705189649 1.15868554272328 0.094229037085675 0.996549428954332 -0.118497789205038 0.0511272745985427 0.0954665884560566 0.221988986748272 0.0511272745985427 0.234581171406239 0.0511272745985427 0.476995774098635 0.867845617077178 -0.147152785679184 -0.213552949726037 -0.350681278757357 0.32568938746567 -0.104996924068849 -0.434808771867702 -1.74241254227078 -0.369095770858849 0.0511272745985427 -0.400362188329704 1.92468991042099 0.329985685998472 0.563899348036284 -0.365124287838419 -0.34689046422312 -0.216287128253913 0.061931769723279 0.0511272745985427
Rv3155 0.722662252738173 -0.839687297880586 0.459974262226114 -0.529758430286211 0.734819647255364 0.870724913725777 -0.160321426293061 -0.131618449548452 0.734543439003327 0.250918536090024 0.455855997361333 -0.732150215343784 0.893637079719272 0.125109084238397 -0.467045801594519 0.276949797313791 -0.245805961905138 -0.00283719584085434 0.0197410508596873 -0.230183947883246 0.138573162513410 0.0933982063795436 0.367542349123598 0.343910676586502 -1.10858971731610 -0.289528260992275 -1.12271047460897 -0.483306895034246 -1.27597365931691 0 -0.323149394729882 -0.65365804051665 -0.0957478372191451 0.89033624427101 0.598796418923439 -0.095906097456719 -0.152967538660048
[+] Show/hide bicluster #3 motif PSSM #1. bicluster 3 motif PSSM #1 Mycobacterium tuberculosis H37Rv 13x4
POSITION A C G T
1 0 0.8 0.05 0.15
2 0.2 0.2 0.5 0.1
3 0 0.7 0.25 0.05
4 0.15 0 0.8 0.05
5 0 0.95 0.05 0
6 0.15 0 0.7 0.15
7 0.6 0 0.35 0.05
8 0 0.9 0 0.1
9 1 0 0 0
10 0 1 0 0
11 0 0.1 0.9 0
12 0.1 0.05 0.7 0.15
13 0.25 0.4 0.05 0.3 [+] Show/hide bicluster #3 motif PSSM #2. bicluster 3 motif PSSM #2 Mycobacterium tuberculosis H37Rv 16x4
POSITION A C G T
1 0 0 0 1
2 0 0 1 0
3 0.666667 0.333333 0 0
4 0 0.333333 0.666667 0
5 0 0 0 1
6 0 0 1 0
7 0 0 1 0
8 0 0 0 1
9 0 1 0 0
10 0 0 1 0
11 0 0 1 0
12 0 0.333333 0 0.666667
13 1 0 0 0
14 0 0 0.666667 0.333333
15 0 0 0 1
16 0 0 0 1 |