./progs//mast $memeOutFname -d $fname -bfile $bgFname -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

David J Reiss, Institute for Systems Biology
cMonkey integrated biclustering algorithm for learning co-regulated gene modules
RCurl, doMC, foreach, multicore, igraph, RSVGTipsDevice, hwriter, ref, bigmemory, filehash
Tools for package development, administration and
documentation

./progs//meme $fname -bfile $bgFname -psp $pspFname -time 600 -dna -revcomp -maxsize 9999999 -nmotifs %1$d -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text -cons $none -pal=non

./progs//meme /tmp/Rtmpm0cjQP/meme.tmp_098Mhn7d9TYiQ3ts0061.fst -bfile /tmp/Rtmpm0cjQP/meme.tmp_ykZxCq80lu15Jz4WK6Dm.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmpm0cjQP/meme.tmp_VxzCucL44wW7951p23f8.out -d /tmp/Rtmpm0cjQP/mast.tmp_oBf8s9ZXM0NF45z1VO13.fst -bfile /tmp/Rtmpm0cjQP/meme.tmp_ykZxCq80lu15Jz4WK6Dm.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

./progs//meme $fname -bfile $bgFname -psp $pspFname -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//meme /tmp/Rtmpm0cjQP/meme.tmp_W82p86jMk2LzYA9K3PZi.fst -bfile /tmp/Rtmpm0cjQP/meme.tmp_f5yM2NqUR4zwTt97P85d.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmpm0cjQP/meme.tmp_2ofb9r1J2OC4Z2W3ejVk.out -d /tmp/Rtmpm0cjQP/mast.tmp_j7uYmpg1FwD6r45NJ676.fst -bfile /tmp/Rtmpm0cjQP/meme.tmp_f5yM2NqUR4zwTt97P85d.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

./progs//meme /tmp/Rtmpm0cjQP/meme.tmp_qInMu16j8167K7tV07io.fst -bfile /tmp/Rtmpm0cjQP/meme.tmp_6quCpr6toc4kJR0Ss0if.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmpm0cjQP/meme.tmp_60q75x95oF5E17L6808a.out -d /tmp/Rtmpm0cjQP/mast.tmp_8gEX7p6Y94tnrK0dB8Zs.fst -bfile /tmp/Rtmpm0cjQP/meme.tmp_6quCpr6toc4kJR0Ss0if.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr