| bicluster | n.genes | n.arrays | score | residual | profile | network | motif1 | motif2 | motif.posns | probe.names | short.names | long.names |
| 1 | 26 | 37 | -28.970 | 0.456 | 
Residual = 0.456 |  | 
aGGGnCgaagGTCCCcaa | 
CCAtCaTGGCCAgGGCtAgGGACA |  | ORF00540 ORFD0388 Rv0076c Rv0079 Rv0164 Rv0201c Rv0569 Rv1194c Rv1520 Rv1592c Rv1733c Rv1996 Rv2007c Rv2029c Rv2030c Rv2031c Rv2032 Rv2406c Rv2623 Rv2626c Rv2627c Rv2628 Rv3134c Rv3289c Rv3749c Rv3782 | TB18.5 fdxA pfkB hspX acg TB31.7 | PROBABLE MEMBRANE PROTEIN | hypothetical protein | probable sugar transferase | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE FERREDOXIN FDXA | Probable phosphofructokinase PfkB (PHOSPHOHEXOKINASE) | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) | Conserved hypothetical protein Acg | POSSIBLE TRANSMEMBRANE PROTEIN | POSSIBLE L-RHAMNOSYLTRANSFERASE |
| 2 | 16 | 39 | -43.245 | 0.320 | 
Residual = 0.320 |  | 
TTCTCncaGAA | 
ATGCCTAA |  | Rv0410c Rv0411c Rv0865 Rv1599 Rv1600 Rv1601 Rv1602 Rv1603 Rv1605 Rv1606 Rv2234 Rv2235 Rv2471 Rv3411c Rv3419c Rv3421c | pknG glnH mog hisD hisC1 hisB hisH hisA hisF hisI ptpA aglA guaB2 gcp | SERINE/THREONINE-PROTEIN KINASE PKNG (PROTEIN KINASE G) (STPK G) | PROBABLE GLUTAMINE-BINDING LIPOPROTEIN GLNH (GLNBP) | PROBABLE MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN | histidinol dehydrogenase | histidinol-phosphate aminotransferase | imidazoleglycerol-phosphate dehydratase | imidazole glycerol phosphate synthase subunit HisH | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | imidazole glycerol phosphate synthase subunit HisF | phosphoribosyl-AMP cyclohydrolase | PHOSPHOTYROSINE PROTEIN PHOSPHATASE PTPA (PROTEIN-TYROSINE-PHOSPHATASE) (PTPase) (LMW PHOSPHATASE) | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE ALPHA-GLUCOSIDASE AGLA (MALTASE) (GLUCOINVERTASE) (GLUCOSIDOSUCRASE) (MALTASE-GLUCOAMYLASE) (LYSOSOMAL ALPHA-GLUCOSIDASE) (ACID MALTASE) | inositol-5-monophosphate dehydrogenase | O-sialoglycoprotein endopeptidase | hypothetical protein |
| 3 | 29 | 37 | -28.960 | 0.458 | 
Residual = 0.458 |  | 
CgCGCGaCACGGc | 
TGagTGGTCGGtAgTT |  | ORF04275 Rv0005 Rv0053 Rv0054 Rv0243 Rv0290 Rv0291 Rv0338c Rv0542c Rv0605 Rv0606 Rv0651 Rv0688 Rv0709 Rv0829 Rv1015c Rv1094 Rv1122 Rv1324 Rv1344 Rv1511 Rv1836c Rv2287 Rv2299c Rv2487c Rv2733c Rv2791c Rv2792c Rv3155 | gyrB rpsF ssb fadA2 mycP3 menE FRAGMENT rplJ rpmC rplY desA2 gnd2 gmdA yjcE htpG PE_PGRS42 nuoK | DNA gyrase subunit B | 30S ribosomal protein S6 | single-strand DNA-binding protein | acetyl-CoA acetyltransferase | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) | PROBABLE IRON-SULFUR-BINDING REDUCTASE | O-succinylbenzoic acid--CoA ligase | POSSIBLE RESOLVASE | POSSIBLE TRANSPOSASE (FRAGMENT) | 50S ribosomal protein L10 | PUTATIVE FERREDOXIN REDUCTASE | 50S ribosomal protein L29 | 50S ribosomal protein L25/general stress protein Ctc | POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE) | 6-phosphogluconate dehydrogenase-like protein | POSSIBLE THIOREDOXIN | acyl carrier protein | GDP-D-mannose dehydratase gmdA (GDP-mannose 4,6 dehydratase) (GMD) | hypothetical protein | Probable conserved integral membrane transport protein YjcE | heat shock protein 90 | PE-PGRS FAMILY PROTEIN | CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN | PROBABLE TRANSPOSASE | NADH dehydrogenase subunit K |
| 4 | 29 | 37 | -26.409 | 0.468 | 
Residual = 0.468 |  | 
AaAgTtTtGnctcATnnCAgaAA | 
AAAGAAT |  | ORF00110 ORF02571 ORFD0373 Rv0028 Rv0060 Rv0074 Rv0103c Rv0188 Rv0212c Rv0527 Rv0729 Rv0959 Rv1254 Rv1256c Rv1452c Rv1545 Rv1546 Rv1570 Rv1650 Rv1688 Rv1907c Rv1908c Rv2552c Rv2572c Rv2900c Rv3015c Rv3222c Rv3362c Rv3481c | ctpB nadR ccdA xylB cyp130 PE_PGRS28 bioD pheT mpg katG aroE aspS fdhF | hypothetical protein | PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN NADR (PROBABLY ASNC-FAMILY) | POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA | POSSIBLE D-XYLULOSE KINASE XYLB (XYLULOKINASE) (XYLULOSE KINASE) | PROBABLE ACYLTRANSFERASE | PROBA BLE CYTOCHROME P450 130 CYP130 | PE-PGRS FAMILY PROTEIN | dithiobiotin synthetase | phenylalanyl-tRNA synthetase subunit beta | 3-methyladenine DNA glycosylase | CATALASE-PEROXIDASE-PEROXYNITRITASE T KATG | shikimate 5-dehydrogenase | aspartyl-tRNA synthetase | POSSIBLE FORMATE DEHYDROGENASE H FDHF (FORMATE-HYDROGEN-LYASE-LINKED, SELENOCYSTEINE-CONTAINING POLYPEPTIDE) (FORMATE DEHYDROGENASE-H ALPHA SUBUNIT) (FDH-H) | PROBABLE ATP/GTP-BINDING PROTEIN | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| 5 | 7 | 34 | -80.848 | 0.173 | 
Residual = 0.173 |  | 
TTttTGnTGA | 
aTCtACA |  | Rv0635 Rv0700 Rv0701 Rv0714 Rv0715 Rv0716 Rv0717 | rpsJ rplC rplN rplX rplE rpsN | hypothetical protein | 30S ribosomal protein S10 | 50S ribosomal protein L3 | 50S ribosomal protein L14 | 50S ribosomal protein L24 | 50S ribosomal protein L5 | 30S ribosomal protein S14 |
| 6 | 21 | 37 | -27.575 | 0.436 | 
Residual = 0.436 |  | 
TgCAAAaagCGTtgT | 
ACCAAcAG |  | ORF00401 ORFD0316 Rv0610c Rv1080c Rv1169c Rv1439c Rv1644 Rv1660 Rv1665 Rv1806 Rv1943c Rv2020c Rv2021c Rv2022c Rv2050 Rv2225 Rv2907c Rv3252c Rv3488 Rv3603c Rv3681c | greA PE11 tsnR pks10 pks11 PE20 panB rimM alkB whiB4 | hypothetical protein | transcription elongation factor GreA | PE FAMILY PROTEIN | Possible 23S rRNA methyltransferase tsnR | Possible chalcone synthase pks10 | Possible chalcone synthase pks11 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | 3-methyl-2-oxobutanoate hydroxymethyltransferase | 16S rRNA-processing protein | PROBABLE TRANSMEMBRANE ALKANE 1-MONOOXYGENASE ALKB (ALKANE 1-HYDROXYLASE) (LAURIC ACID OMEGA-HYDROXYLASE) (OMEGA-HYDROXYLASE) (FATTY ACID OMEGA-HYDROXYLASE) (ALKANE HYDROXYLASE-RUBREDOXIN) | CONSERVED HYPOTHETICAL ALANINE AND LEUCINE RICH PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB4 |
| 7 | 30 | 39 | -27.785 | 0.423 | 
Residual = 0.423 |  | 
TcGaCGangAcggtGtCGncG | 
ATCGAcAA |  | Rv0018c Rv0053 Rv0112 Rv0136 Rv0247c Rv0271c Rv0350 Rv0351 Rv0353 Rv0479c Rv0722 Rv0860 Rv1014c Rv1015c Rv1142c Rv1152 Rv1309 Rv1310 Rv1480 Rv1511 Rv1528c Rv1787 Rv1795 Rv1836c Rv1904 Rv2097c Rv3002c Rv3045 Rv3151 Rv3155 | ppp rpsF gca cyp138 fadE6 dnaK grpE hspR rpmD fadB pth rplY echA10 atpG atpD gmdA papA4 PPE25 ilvH adhC nuoG nuoK | POSSIBLE SERINE/THREONINE PHOSPHATASE PPP | 30S ribosomal protein S6 | POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) | PROBABLE CYTOCHROME P450 138 CYP138 | fumarate reductase iron-sulfur subunit | PROBABLE ACYL-CoA DEHYDROGENASE FADE6 | molecular chaperone DnaK | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) | PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR (MERR FAMILY) | PROBABLE CONSERVED MEMBRANE PROTEIN | 50S ribosomal protein L30 | PROBABLE FATTY OXIDATION PROTEIN FADB | peptidyl-tRNA hydrolase | 50S ribosomal protein L25/general stress protein Ctc | enoyl-CoA hydratase | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | F0F1 ATP synthase subunit gamma | F0F1 ATP synthase subunit beta | hypothetical protein | GDP-D-mannose dehydratase gmdA (GDP-mannose 4,6 dehydratase) (GMD) | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4 | PPE FAMILY PROTEIN | acetolactate synthase 3 regulatory subunit | PROBABLE NADP-DEPENDENT ALCOHOL DEHYDROGENASE ADHC | NADH dehydrogenase subunit G | NADH dehydrogenase subunit K |
| 8 | 21 | 38 | -37.713 | 0.329 | 
Residual = 0.329 |  | 
TCGTTGtc | 
AGAACTAAAtA |  | ORF01330 ORF03103 ORF03108 Rv0227c Rv0230c Rv0231 Rv0257c Rv0566c Rv1703c Rv2046 Rv2140c Rv2220 Rv2301 Rv2715 Rv3390 Rv3547 Rv3826 Rv3846 Rv3890c Rv3891c Rv3914 | php fadE4 lppI TB18.6 glnA1 cut2 lpqD fadD23 sodA esxC esxD trxC | PROBABLE CONSERVED MEMBRANE PROTEIN | PROBABLE PHOSPHOTRIESTERASE PHP (PARATHION HYDROLASE) (PTE) (ARYLDIALKYLPHOSPHATASE) (PARAOXONASE) (A-ESTERASE) (ARYLTRIPHOSPHATASE) (PARAOXON HYDROLASE) | PROBABLE ACYL-CoA DEHYDROGENASE FADE4 | nucleotide-binding protein | Probable catechol-o-methyltransferase | Probable lipoprotein lppI | hypothetical protein | GLUTAMINE SYNTHETASE GLNA1 (GLUTAMINE SYNTHASE) (GS-I) | PROBABLE CUTINASE CUT2 | POSSIBLE HYDROLASE | PROBABLE CONSERVED LIPOPROTEIN LPQD | acyl-CoA synthetase | SUPEROXIDE DISMUTASE [FE] SODA | ESAT-6 LIKE PROTEIN ESXC (ESAT-6 like protein 11) | POSSIBLE ESAT-6 LIKE PROTEIN ESXD | THIOREDOXIN TRXC (TRX) (MPT46) |
| 9 | 25 | 38 | -33.021 | 0.448 | 
Residual = 0.448 |  | 
ggTCgatGATG | 
GaaAtTcatCttaGtntgcTCTtA |  | ORF00540 ORF01250 Rv0058 Rv0249c Rv0483 Rv0867c Rv1013 Rv1355c Rv1592c Rv1653 Rv1654 Rv1688 Rv1947 Rv2024c Rv2243 Rv2244 Rv2245 Rv2246 Rv2247 Rv2280 Rv2428 Rv2524c Rv3140 Rv3801c Rv3838c | dnaB SUCCINIC DEHYDROGENASE lprQ rpfA pks16 moeY argJ argB mpg fabD acpP kasA kasB accD6 ahpC fas fadE23 fadD32 pheA | replicative DNA helicase | PROBABLE SUCCINATE DEHYDROGENASE [MEMBRANE ANCHOR SUBUNIT] (SUCCINIC DEHYDROGENASE) | PROBABLE CONSERVED LIPOPROTEIN LPRQ | POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA | acyl-CoA synthetase | hypothetical protein | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein | acetylglutamate kinase | 3-methyladenine DNA glycosylase | acyl-carrier-protein S-malonyltransferase | acyl carrier protein | 3-oxoacyl-(acyl carrier protein) synthase II | ACETYL/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD6 | Probable dehydrogenase | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) | PROBABLE FATTY ACID SYNTHASE FAS (FATTY ACID SYNTHETASE) | PROBABLE ACYL-CoA DEHYDROGENASE FADE23 | prephenate dehydratase |
| 10 | 32 | 38 | -28.751 | 0.428 | 
Residual = 0.428 |  | 
ACgGgCcAGCagAnaGAtaAcCG | 
TTGcGacTgCTggtG |  | ORF01250 ORF05336 Rv0432 Rv0682 Rv0685 Rv0706 Rv0730 Rv0732 Rv0926c Rv1018c Rv1096 Rv1172c Rv1179c Rv1361c Rv1848 Rv1980c Rv2138 Rv2203 Rv2239c Rv2375 Rv2519 Rv2808 Rv2844 Rv3280 Rv3392c Rv3477 Rv3478 Rv3487c Rv3602c Rv3721c Rv3822 Rv3883c | sodC rpsL tuf rplV secY glmU PE12 PPE19 ureA mpt64 lppL PE26 accD5 cmaA1 PE31 PPE60 lipF panC dnaZX mycP1 | PROBABLE PERIPLASMIC SUPEROXIDE DISMUTASE [CU-ZN] SODC | 30S ribosomal protein S12 | elongation factor Tu | 50S ribosomal protein L22 | hypothetical protein | preprotein translocase subunit SecY | Probable UDP-N-acetylglucosamine pyrophosphorylase glmU | POSSIBLE GLYCOSYL HYDROLASE | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | urease subunit gamma | IMMUNOGENIC PROTEIN MPT64 (ANTIGEN MPT64/MPB64) | Probable conserved lipoprotein LppL | POSSIBLE CONSERVED MEMBRANE PROTEIN | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN | PROBABLE PROPIONYL-CoA CARBOXYLASE BETA CHAIN 5 ACCD5 (PCCASE) (PROPANOYL-COA:CARBON DIOXIDE LIGASE) | CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 1 CMAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 1) | PROBABLE ESTERASE/LIPASE LIPF | pantoate--beta-alanine ligase | DNA polymerase III subunits gamma and tau | MEMBRANE-ANCHORED MYCOSIN MYCP1 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-1) |
| 11 | 25 | 37 | -17.177 | 0.499 | 
Residual = 0.499 |  | 
TCAATaT | 
GtttAGtTgctGTnacaG |  | ORF06170 ORF08434 Rv0430 Rv0455c Rv0871 Rv0948c Rv1174c Rv1176c Rv1192 Rv1202 Rv1444c Rv1528c Rv1637c Rv2329c Rv2375 Rv2387 Rv2412 Rv2450c Rv2459 Rv2764c Rv2892c Rv2971 Rv3194c Rv3628 Rv3686c | cspB TB8.4 dapE papA4 narK1 rpsT rpfE thyA PPE45 ppa | hypothetical protein | PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB | LOW MOLECULAR WEIGHT T-CELL ANTIGEN TB8.4 | dipeptidase | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4 | PROBABLE NITRITE EXTRUSION PROTEIN 1 NARK1 (NITRITE FACILITATOR 1) | 30S ribosomal protein S20 | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFE | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN | thymidylate synthase | PPE FAMILY PROTEIN | PROBABLE OXIDOREDUCTASE | POSSIBLE CONSERVED SECRETED PROTEIN | inorganic pyrophosphatase |
| 12 | 8 | 36 | -69.169 | 0.160 | 
Residual = 0.160 |  | 
| 
|  | Rv0702 Rv0703 Rv0704 Rv0705 Rv0708 Rv0718 Rv0719 Rv0720 | rplD rplW rplB rpsS rplP rpsH rplF rplR | 50S ribosomal protein L4 | 50S ribosomal protein L23 | 50S ribosomal protein L2 | 30S ribosomal protein S19 | 50S ribosomal protein L16 | 30S ribosomal protein S8 | 50S ribosomal protein L6 | 50S ribosomal protein L18 |
| 13 | 14 | 37 | -52.951 | 0.308 | 
Residual = 0.308 |  | 
CgACGgCgcgCTgna | 
TCAAtcngCcC |  | Rv0931c Rv1133c Rv1306 Rv1311 Rv1312 Rv1422 Rv1596 Rv1821 Rv2195 Rv2196 Rv2475c Rv2476c Rv2553c Rv3193c | pknD metE atpF atpC nadC secA2 qcrA qcrB gdh | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | F0F1 ATP synthase subunit B | F0F1 ATP synthase subunit epsilon | CONSERVED HYPOTHETICAL SECRETED PROTEIN | hypothetical protein | nicotinate-nucleotide pyrophosphorylase | preprotein translocase subunit SecA | Probable Rieske iron-sulfur protein QcrA | Probable Ubiquinol-cytochrome C reductase QcrB (cytochrome B subunit) | PROBABLE NAD-DEPENDENT GLUTAMATE DEHYDROGENASE GDH (NAD-GDH) (NAD-DEPENDENT GLUTAMIC DEHYDROGENASE) | PROBABLE CONSERVED MEMBRANE PROTEIN |
| 14 | 35 | 37 | -19.989 | 0.508 | 
Residual = 0.508 |  | 
atTagAACAcGTTCTAGTntnana | 
CGtGTCtCCCAAAtTTTaAGgTAC |  | ORF00090 Rv0088 Rv0188 Rv0443 Rv0581 Rv0628c Rv0686 Rv0810c Rv0824c Rv0898c Rv0940c Rv1042c Rv1094 Rv1149 Rv1177 Rv1593c Rv1894c Rv2077c Rv2222c Rv2540c Rv2749 Rv2798c Rv2827c Rv2925c Rv2926c Rv3385c Rv3396c Rv3420c Rv3502c Rv3503c Rv3573c Rv3583c Rv3854c Rv3857c Rv3917c | desA1 desA2 fdxC glnA2 aroF rnc guaA rimI fabG fdxD fadE34 ethA parB | hypothetical protein | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE MEMBRANE PROTEIN | PROBABLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA1 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE) (PROTEIN DES) | POSSIBLE OXIDOREDUCTASE | PROBABLE IS LIKE-2 TRANSPOSASE | POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE) | POSSIBLE TRANSPOSASE | PROBABLE FERREDOXIN FDXC | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE GLUTAMINE SYNTHETASE GLNA2 (GLUTAMINE SYNTHASE) (GS-II) | chorismate synthase | ribonuclease III | bifunctional GMP synthase/glutamine amidotransferase protein | PROBABLE RIBOSOMAL-PROTEIN-ALANINE ACETYLTRANSFERASE RIMI (ACETYLATING ENZYME FOR N-TERMINAL OF RIBOSOMAL PROTEIN S18) | 3-ketoacyl-(acyl-carrier-protein) reductase | PROBABLE FERREDOXIN FDXD | PROBABLE ACYL-CoA DEHYDROGENASE FADE34 | POSSIBLE TRANSCRIPTION FACTOR | MONOOXYGENASE ETHA | POSSIBLE MEMBRANE PROTEIN | PROBABLE CHROMOSOME PARTITIONING PROTEIN PARB |
| 15 | 25 | 38 | -35.844 | 0.397 | 
Residual = 0.397 |  | 
GAAtTccnCGACgAG | 
CactgtTCtnggTtAggTCga |  | Rv0053 Rv0054 Rv0268c Rv0277c Rv0608 Rv0609 Rv0611c Rv0749 Rv1080c Rv1103c Rv1486c Rv1840c Rv1875 Rv1986 Rv2306c Rv2331 Rv2396 Rv2465c Rv2520c Rv2584c Rv2645 Rv2784c Rv3033 Rv3603c Rv3714c | rpsF ssb greA PE_PGRS34 PE_PGRS41 apt lppU | 30S ribosomal protein S6 | single-strand DNA-binding protein | hypothetical protein | transcription elongation factor GreA | PE-PGRS FAMILY PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | ribose-5-phosphate isomerase B | POSSIBLE CONSERVED MEMBRANE PROTEIN | adenine phosphoribosyltransferase | PROBABLE LIPOPROTEIN LPPU | CONSERVED HYPOTHETICAL ALANINE AND LEUCINE RICH PROTEIN |
| 16 | 20 | 37 | -43.530 | 0.349 | 
Residual = 0.349 |  | 
tCTGaTaTAGCTGAAAACaAA | 
aAccaaAaGGagcAAaGAAcAA |  | ORF00329 ORF05235 Rv0367c Rv0476 Rv0477 Rv1389 Rv1390 Rv1989c Rv1991c Rv2430c Rv2630 Rv2825c Rv3426 Rv3429 Rv3462c Rv3580c Rv3582c Rv3585 Rv3872 Rv3873 | gmk rpoZ PPE41 PPE58 PPE59 infA cysS ispD radA PE35 PPE68 | hypothetical protein | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | POSSIBLE CONSERVED SECRETED PROTEIN | guanylate kinase | DNA-directed RNA polymerase subunit omega | PPE FAMILY PROTEIN | translation initiation factor IF-1 | cysteinyl-tRNA synthetase | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | DNA repair protein RadA | PE FAMILY-RELATED PROTEIN |
| 17 | 15 | 34 | -65.489 | 0.245 | 
Residual = 0.245 |  | 
AgCTCGGTgAT | 
aCCACcgaCAAcAA |  | Rv0606 Rv0758 Rv1056 Rv1574 Rv1585c Rv1586c Rv1587c Rv1588c Rv1589 Rv1599 Rv1702c Rv1982c Rv2056c Rv3466 Rv3827c | FRAGMENT phoR bioB hisD rpsN | POSSIBLE TRANSPOSASE (FRAGMENT) | POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE ASSOCIATED PHOR | hypothetical protein | Probable phiRV1 phage related protein | Possible phage phiRv1 protein | Probable phiRv1 integrase | Partial REP13E12 repeat protein | biotin synthase | histidinol dehydrogenase | 30S ribosomal protein S14 | POSSIBLE TRANSPOSASE |
| 18 | 20 | 37 | -22.630 | 0.521 | 
Residual = 0.521 |  | 
GaTGcCGATcA | 
agATCACACtA |  | ORFD0293 Rv0483 Rv0558 Rv0795 Rv0921 Rv1230c Rv1254 Rv1380 Rv1542c Rv1707 Rv1873 Rv2428 Rv2429 Rv2459 Rv2510c Rv2700 Rv2732c Rv3027c Rv3362c Rv3392c | lprQ ubiE FRAGMENT pyrB glbN ahpC ahpD cmaA1 | PROBABLE CONSERVED LIPOPROTEIN LPRQ | ubiquinone/menaquinone biosynthesis methyltransferase | PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 (FRAGMENT) | POSSIBLE RESOLVASE | POSSIBLE MEMBRANE PROTEIN | PROBABLE ACYLTRANSFERASE | aspartate carbamoyltransferase catalytic subunit | Probable hemoglobin glbN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | hypothetical protein | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) | ALKYL HYDROPEROXIDE REDUCTASE D PROTEIN AHPD (ALKYL HYDROPEROXIDASE D) | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN | POSSIBLE CONSERVED SECRETED ALANINE RICH PROTEIN | PROBABLE ATP/GTP-BINDING PROTEIN | CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 1 CMAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) (CYCLOPROPANE MYCOLIC ACID SYNTHASE 1) |
| 19 | 35 | 35 | -22.916 | 0.474 | 
Residual = 0.474 |  | 
AgtACCGTcAA | 
AaGCGtTtaTC |  | ORF02877 ORF03118 ORF04123 Rv0263c Rv0485 Rv0626 Rv0627 Rv0885 Rv0886 Rv1243c Rv1789 Rv1861 Rv1887 Rv1959c Rv1981c Rv1986 Rv2093c Rv2371 Rv2373c Rv2466c Rv2493 Rv2534c Rv2535c Rv2707 Rv2731 Rv2809 Rv2841c Rv3135 Rv3221c Rv3331 Rv3337 Rv3371 Rv3451 Rv3645 Rv3710 | fprB PE_PGRS23 PPE26 nrdF tatC PE_PGRS40 dnaJ2 efp pepQ nusA PPE50 TB7.3 sugI cut3 leuA | hypothetical protein | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) | PE-PGRS FAMILY PROTEIN | PPE FAMILY PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | ribonucleotide-diphosphate reductase subunit beta | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | Probable Sec-independent protein translocase transmembrane protein tatC | PROBABLE CHAPERONE PROTEIN DNAJ2 | elongation factor P | PROBABLE CYTOPLASMIC PEPTIDASE PEPQ | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN | CONSERVED HYPOTHETICAL ALANINE AND ARGININE RICH PROTEIN | transcription elongation factor NusA | PROBABLE SUGAR-TRANSPORT INTEGRAL MEMBRANE PROTEIN SUGI | PROBABLE CUTINASE PRECURSOR CUT3 | 2-isopropylmalate synthase |
| 20 | 5 | 36 | -69.725 | 0.141 | 
Residual = 0.141 |  | 
| 
|  | Rv0703 Rv0704 Rv0705 Rv0707 Rv0708 | rplW rplB rpsS rpsC rplP | 50S ribosomal protein L23 | 50S ribosomal protein L2 | 30S ribosomal protein S19 | 30S ribosomal protein S3 | 50S ribosomal protein L16 |
| 21 | 21 | 38 | -39.193 | 0.365 | 
Residual = 0.365 |  | 
AGttTTCaCtCGACTTGcT | 
TCAAaGAaACGAAaA |  | Rv0005 Rv0006 Rv0041 Rv0556 Rv1122 Rv1700 Rv1701 Rv1797 Rv2109c Rv2260 Rv2553c Rv2586c Rv2703 Rv2790c Rv2942 Rv3045 Rv3240c Rv3254 Rv3596c Rv3800c Rv3877 | gyrB gyrA leuS gnd2 xerD prcA secF sigA ltp1 mmpL7 adhC secA1 clpC1 pks13 | DNA gyrase subunit B | DNA gyrase subunit A | leucyl-tRNA synthetase | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | 6-phosphogluconate dehydrogenase-like protein | hypothetical protein | site-specific tyrosine recombinase XerD | proteasome (alpha subunit) PrcA | PROBABLE CONSERVED MEMBRANE PROTEIN | preprotein translocase subunit SecF | RNA polymerase sigma factor RpoD | lipid-transfer protein | CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL7 | PROBABLE NADP-DEPENDENT ALCOHOL DEHYDROGENASE ADHC | preprotein translocase subunit SecA | PROBABLE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC1 | POLYKETIDE SYNTHASE PKS13 |
| 22 | 32 | 36 | -31.108 | 0.378 | 
Residual = 0.378 |  | 
TggtGgTGcT | 
ATTGTTTT |  | ORF04275 ORF04548 ORF08416 Rv0020c Rv0055 Rv0056 Rv0654 Rv0701 Rv1046c Rv1277 Rv1379 Rv1441c Rv1535 Rv1641 Rv1642 Rv1643 Rv2249c Rv2331 Rv2413c Rv2441c Rv2465c Rv2466c Rv2543 Rv2719c Rv2843 Rv2904c Rv3172c Rv3524 Rv3850 Rv3922c Rv3923c Rv3924c | TB39.8 rpsR rplI rplC pyrR PE_PGRS26 infC rpmI rplT glpD1 rpmA lppA rplS rnpA rpmH | hypothetical protein | 30S ribosomal protein S18 | 50S ribosomal protein L9 | PROBABLE DIOXYGENASE | 50S ribosomal protein L3 | pyrimidine regulatory protein PyrR | PE-PGRS FAMILY PROTEIN | translation initiation factor IF-3 | 50S ribosomal protein L35 | 50S ribosomal protein L20 | PROBABLE GLYCEROL-3-PHOSPHATE DEHYDROGENASE GLPD1 | 50S ribosomal protein L27 | ribose-5-phosphate isomerase B | PROBABLE CONSERVED LIPOPROTEIN LPPA | POSSIBLE CONSERVED MEMBRANE PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN | 50S ribosomal protein L19 | PROBABLE CONSERVED MEMBRANE PROTEIN | ribonuclease P | 50S ribosomal protein L34 |
| 23 | 28 | 37 | -27.064 | 0.457 | 
Residual = 0.457 |  | 
tAatTnGGnAaGCCtAacCnaagt | 
TtGTCtAAGtaTAGCgaGG |  | Rv0002 Rv0068 Rv0332 Rv0469 Rv0572c Rv0848 Rv0951 Rv1041c Rv1168c Rv1221 Rv1245c Rv1347c Rv1365c Rv1475c Rv1829 Rv1876 Rv1883c Rv1884c Rv2075c Rv2122c Rv2129c Rv2204c Rv2971 Rv3463 Rv3485c Rv3840 Rv3841 Rv3913 | dnaN umaA cysK2 sucC PPE17 sigE rsfA acn bfrA rpfC hisE bfrB trxB2 | DNA polymerase III subunit beta | short chain dehydrogenase | hypothetical protein | POSSIBLE MYCOLIC ACID SYNTHASE UMAA | POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) | succinyl-CoA synthetase subunit beta | PROBABLE IS LIKE-2 TRANSPOSASE | PPE FAMILY PROTEIN | RNA polymerase sigma factor SigE | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE | ANTI-ANTI-SIGMA FACTOR RSFA (ANTI-SIGMA FACTOR ANTAGONIST) (REGULATOR OF SIGMA F A) | aconitate hydratase | PROBABLE BACTERIOFERRITIN BFRA | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFC | Possible hypothetical exported or envelope protein | phosphoribosyl-ATP pyrophosphatase | PROBABLE OXIDOREDUCTASE | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE BACTERIOFERRITIN BFRB | PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR) |
| 24 | 14 | 38 | -51.644 | 0.297 | 
Residual = 0.297 |  | 
GCCGgcGACGAT | 
aCCcTgGACCA |  | ORF03103 Rv0203 Rv0227c Rv0643c Rv2421c Rv2441c Rv2442c Rv2585c Rv3101c Rv3438 Rv3721c Rv3791 Rv3820c Rv3924c | mmaA3 nadD rpmA rplU ftsX dnaZX papA2 rpmH | POSSIBLE EXPORTED PROTEIN | PROBABLE CONSERVED MEMBRANE PROTEIN | METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) | nicotinic acid mononucleotide adenyltransferase | 50S ribosomal protein L27 | 50S ribosomal protein L21 | POSSIBLE CONSERVED LIPOPROTEIN | PUTATIVE CELL DIVISION PROTEIN FTSX (SEPTATION COMPONENT-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER) | hypothetical protein | DNA polymerase III subunits gamma and tau | short chain dehydrogenase | POSSIBLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA2 | 50S ribosomal protein L34 |
| 25 | 22 | 36 | -41.396 | 0.407 | 
Residual = 0.407 |  | 
TGCtgAngaaCTGttGtcAG | 
caACAacTAcgAGcagCAaGagCA |  | ORF01755 ORF08410 Rv0072 Rv0231 Rv0679c Rv0831c Rv1155 Rv1197 Rv1198 Rv1206 Rv1704c Rv2346c Rv2347c Rv2348c Rv2409c Rv3619c Rv3620c Rv3706c Rv3823c Rv3889c Rv3890c Rv3891c | fadE4 esxK esxL fadD6 cycA esxO esxP esxV esxW mmpL8 esxC esxD | PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE ACYL-CoA DEHYDROGENASE FADE4 | CONSERVED HYPOTHETICAL THREONINE RICH PROTEIN | hypothetical protein | ESAT-6 LIKE PROTEIN ESXK (ESAT-6 LIKE PROTEIN 3) | PUTATIVE ESAT-6 LIKE PROTEIN ESXL (ESAT-6 LIKE PROTEIN 4) | acyl-CoA synthetase | PROBABLE D-SERINE/ALANINE/GLYCINE TRANSPORTER PROTEIN CYCA | PUTATIVE ESAT-6 LIKE PROTEIN ESXO (ESAT-6 LIKE PROTEIN 6) | PUTATIVE ESAT-6 LIKE PROTEIN ESXP (ESAT-6 LIKE PROTEIN 7) | PUTATIVE ESAT-6 LIKE PROTEIN ESXV (ESAT-6 LIKE PROTEIN 1) | PUTATIVE ESAT-6 LIKE PROTEIN ESXW (ESAT-6 LIKE PROTEIN 10) | CONSERVED HYPOTHETICAL PROLINE RICH PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN MMPL8 | ESAT-6 LIKE PROTEIN ESXC (ESAT-6 like protein 11) | POSSIBLE ESAT-6 LIKE PROTEIN ESXD |
| 26 | 29 | 36 | -27.327 | 0.457 | 
Residual = 0.457 |  | 
CTGCtAcATgA | 
nCGaTcATtTccTcg |  | ORF01125 ORF03108 Rv0203 Rv0429c Rv0643c Rv0717 Rv0719 Rv0732 Rv1096 Rv1363c Rv1630 Rv1984c Rv2203 Rv2271 Rv2519 Rv2563 Rv2928 Rv2929 Rv2949c Rv2959c Rv3311 Rv3354 Rv3442c Rv3547 Rv3706c Rv3780 Rv3846 Rv3847 Rv3883c | def mmaA3 rpsN rplF secY rpsA cfp21 PE26 tesA METHYLASE rpsI sodA mycP1 | POSSIBLE EXPORTED PROTEIN | peptide deformylase | METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) | 30S ribosomal protein S14 | 50S ribosomal protein L6 | preprotein translocase subunit SecY | POSSIBLE GLYCOSYL HYDROLASE | POSSIBLE MEMBRANE PROTEIN | 30S ribosomal protein S1 | PROBABLE CUTINASE PRECURSOR CFP21 | POSSIBLE CONSERVED MEMBRANE PROTEIN | hypothetical protein | PE FAMILY PROTEIN | PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE THIOESTERASE TESA | POSSIBLE METHYLTRANSFERASE (METHYLASE) | 30S ribosomal protein S9 | CONSERVED HYPOTHETICAL PROLINE RICH PROTEIN | SUPEROXIDE DISMUTASE [FE] SODA | MEMBRANE-ANCHORED MYCOSIN MYCP1 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-1) |
| 27 | 13 | 38 | -58.510 | 0.281 | 
Residual = 0.281 |  | 
CCgACAaA | 
AaAGGAAGAgGAAA |  | Rv0667 Rv0668 Rv0683 Rv0684 Rv2888c Rv2889c Rv2890c Rv3456c Rv3457c Rv3458c Rv3459c Rv3460c Rv3722c | rpoB rpoC rpsG fusA1 amiC tsf rpsB rplQ rpoA rpsD rpsK rpsM | DNA-directed RNA polymerase subunit beta | DNA-directed RNA polymerase subunit beta' | 30S ribosomal protein S7 | elongation factor G | amidase | elongation factor Ts | 30S ribosomal protein S2 | 50S ribosomal protein L17 | DNA-directed RNA polymerase subunit alpha | 30S ribosomal protein S4 | 30S ribosomal protein S11 | 30S ribosomal protein S13 | hypothetical protein |
| 28 | 33 | 37 | -31.778 | 0.474 | 
Residual = 0.474 |  | 
tAcgTTtaTACAnataaAnnTgTA | 
aGCtTTGCcCtGGtGCAGgCGAcG |  | Rv0196 Rv0197 Rv0211 Rv0599c Rv0726c Rv1057 Rv1218c Rv1391 Rv1392 Rv1981c Rv2008c Rv2009 Rv2010 Rv2111c Rv2327 Rv2526 Rv2619c Rv2620c Rv2621c Rv2622 Rv2641 Rv2642 Rv2801c Rv2920c Rv3050c Rv3064c Rv3065 Rv3070 Rv3402c Rv3451 Rv3526 Rv3839 Rv3896c | pckA dfp metK nrdF METHYLASE cadI PROBABLY ARSR-FAMILY amt PROBABLY ASNC-FAMILY mmr ccrB cut3 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE OXIDOREDUCTASE | phosphoenolpyruvate carboxykinase | hypothetical protein | PROBABLE TETRONASIN-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase | S-adenosylmethionine synthetase | ribonucleotide-diphosphate reductase subunit beta | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | POSSIBLE METHYLTRANSFERASE (METHYLASE) | CADMIUM INDUCIBLE PROTEIN CADI | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) | PROBABLE AMMONIUM-TRANSPORT INTEGRAL MEMBRANE PROTEIN AMT | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | MULTIDRUGS-TRANSPORT INTEGRAL MEMBRANE PROTEIN MMR | camphor resistance protein CrcB | PROBABLE CUTINASE PRECURSOR CUT3 |
| 29 | 21 | 36 | -40.440 | 0.361 | 
Residual = 0.361 |  | 
taaACTGTAtcGTGTaCTatTT | 
GctTTcTcgtaTtACcCcAaGtC |  | ORF05589 ORFD0179 Rv0758 Rv1102c Rv1397c Rv1460 Rv1461 Rv1992c Rv1994c Rv2117 Rv2158c Rv2304c Rv2618 Rv2688c Rv2694c Rv2710 Rv2711 Rv3173c Rv3526 Rv3527 Rv3570c | phoR ctpG murE sigB ideR PROBABLY TETR/ACRR-FAMILY | POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE ASSOCIATED PHOR | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE G CTPG | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase | PROBABLE ANTIBIOTIC-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER | RNA polymerase sigma factor SigB | IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) | POSSIBLE OXIDOREDUCTASE |
| 30 | 22 | 37 | -36.061 | 0.363 | 
Residual = 0.363 |  | 
ATCGAgaa | 
ACTTCTT |  | ORF03287 ORF06004 Rv0076c Rv0163 Rv0281 Rv0366c Rv0905 Rv1409 Rv1587c Rv1599 Rv1600 Rv2056c Rv2058c Rv2398c Rv2399c Rv2440c Rv3360 Rv3645 Rv3732 Rv3859c Rv3878 Rv3896c | echA6 ribG hisD hisC1 rpsN rpmB cysW cysT obgE gltB | PROBABLE MEMBRANE PROTEIN | hypothetical protein | enoyl-CoA hydratase | PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase) | Partial REP13E12 repeat protein | histidinol dehydrogenase | histidinol-phosphate aminotransferase | 30S ribosomal protein S14 | 50S ribosomal protein L28 | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYSW | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYST | GTPase ObgE | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE [NADPH] (LARGE SUBUNIT) GLTB (L-GLUTAMATE SYNTHASE) (L-GLUTAMATE SYNTHETASE) (NADH-GLUTAMATE SYNTHASE) (GLUTAMATE SYNTHASE (NADH))(NADPH-GOGAT) | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN |
| 31 | 28 | 38 | -28.131 | 0.489 | 
Residual = 0.489 |  | 
GCatTgGCAtTGgCTGCTCgCatA | 
ACctTGACgCcCgGtGaGATCttG |  | ORF01824 ORF06092 Rv0077c Rv0167 Rv0179c Rv0341 Rv0509 Rv1005c Rv1006 Rv1223 Rv1440 Rv2185c Rv2287 Rv2417c Rv2418c Rv2471 Rv2494 Rv2499c Rv2565 Rv2683 Rv3041c Rv3085 Rv3086 Rv3339c Rv3732 Rv3750c Rv3859c Rv3871 | yrbE1A lprO iniB hemA pabB htrA secG TB16.3 yjcE aglA adhD icd1 gltB | PROBABLE OXIDOREDUCTASE | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A | POSSIBLE LIPOPROTEIN LPRO | ISONIAZID INDUCTIBLE GENE PROTEIN INIB | glutamyl-tRNA reductase | para-aminobenzoate synthase component I | hypothetical protein | PROBABLE SERINE PROTEASE HTRA (DEGP PROTEIN) | preprotein translocase subunit SecG | Probable conserved integral membrane transport protein YjcE | PROBABLE ALPHA-GLUCOSIDASE AGLA (MALTASE) (GLUCOINVERTASE) (GLUCOSIDOSUCRASE) (MALTASE-GLUCOAMYLASE) (LYSOSOMAL ALPHA-GLUCOSIDASE) (ACID MALTASE) | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE | PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE ADHD (ALDEHYDE REDUCTASE) | isocitrate dehydrogenase | POSSIBLE EXCISIONASE | PROBABLE FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE [NADPH] (LARGE SUBUNIT) GLTB (L-GLUTAMATE SYNTHASE) (L-GLUTAMATE SYNTHETASE) (NADH-GLUTAMATE SYNTHASE) (GLUTAMATE SYNTHASE (NADH))(NADPH-GOGAT) |
| 32 | 16 | 38 | -48.879 | 0.296 | 
Residual = 0.296 |  | 
CGGtcggGtanCGgTGGT | 
AAAACT |  | Rv0049 Rv0490 Rv1294 Rv1333 Rv1596 Rv2097c Rv2109c Rv2587c Rv2703 Rv2753c Rv3042c Rv3044 Rv3212 Rv3244c Rv3283 Rv3596c | senX3 thrA nadC prcA secD sigA dapA serB2 fecB lpqB sseA clpC1 | hypothetical protein | PUTATIVE TWO COMPONENT SENSOR HISTIDINE KINASE SENX3 | homoserine dehydrogenase | PROBABLE HYDROLASE | nicotinate-nucleotide pyrophosphorylase | proteasome (alpha subunit) PrcA | preprotein translocase subunit SecD | RNA polymerase sigma factor RpoD | dihydrodipicolinate synthase | phosphoserine phosphatase | PROBABLE FEIII-DICITRATE-BINDING PERIPLASMIC LIPOPROTEIN FECB | CONSERVED HYPOTHETICAL ALANINE VALINE RICH PROTEIN | PROBABLE CONSERVED LIPOPROTEIN LPQB | PROBABLE THIOSULFATE SULFURTRANSFERASE SSEA (RHODANESE) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) | PROBABLE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC1 |
| 33 | 27 | 37 | -31.296 | 0.406 | 
Residual = 0.406 |  | 
AATaCAccCAGAT | 
TCgAcTccctGnGtnnaGCTTcGC |  | ORF01809 ORF05469 ORFD0244 Rv0068 Rv0361 Rv0469 Rv0680c Rv0739 Rv0740 Rv1475c Rv1608c Rv1984c Rv2132 Rv2185c Rv2187 Rv2632c Rv2633c Rv2764c Rv3194c Rv3249c Rv3251c Rv3252c Rv3463 Rv3628 Rv3674c Rv3849 Rv3913 | umaA acn bcpB cfp21 TB16.3 fadD15 thyA PROBABLY TETR-FAMILY rubA alkB ppa nth trxB2 | short chain dehydrogenase | PROBABLE CONSERVED MEMBRANE PROTEIN | POSSIBLE MYCOLIC ACID SYNTHASE UMAA | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | hypothetical protein | aconitate hydratase | Probable peroxidoxin BcpB | PROBABLE CUTINASE PRECURSOR CFP21 | Probable long-chain-fatty-acid-CoA ligase fadD15 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) | thymidylate synthase | POSSIBLE CONSERVED SECRETED PROTEIN | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | PROBABLE RUBREDOXIN RUBA | PROBABLE TRANSMEMBRANE ALKANE 1-MONOOXYGENASE ALKB (ALKANE 1-HYDROXYLASE) (LAURIC ACID OMEGA-HYDROXYLASE) (OMEGA-HYDROXYLASE) (FATTY ACID OMEGA-HYDROXYLASE) (ALKANE HYDROXYLASE-RUBREDOXIN) | inorganic pyrophosphatase | PROBABLE ENDONUCLEASE III NTH (DNA-(APURINIC OR APYRIMIDINIC SITE)LYASE) (AP LYASE) (AP ENDONUCLEASE CLASS I) (ENDODEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) (DEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) | PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR) |
| 34 | 19 | 35 | -40.031 | 0.344 | 
Residual = 0.344 |  | 
cgcTgTtTGaG | 
AAAAGGTT |  | ORF05723 Rv0206c Rv0501 Rv0732 Rv1192 Rv1871c Rv1872c Rv2199c Rv2200c Rv2376c Rv2588c Rv3219 Rv3584 Rv3682 Rv3686c Rv3753c Rv3803c Rv3804c Rv3888c | mmpL3 galE2 secY lldD2 ctaC cfp2 yajC whiB1 lpqE ponA2 fbpD fbpA | POSSIBLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL3 | POSSIBLE UDP-GLUCOSE 4-EPIMERASE GALE2 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) | preprotein translocase subunit SecY | hypothetical protein | POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD2 | Possible conserved integral membrane protein | PROBABLE TRANSMEMBRANE CYTOCHROME C OXIDASE (SUBUNIT II) CTAC | LOW MOLECULAR WEIGHT ANTIGEN CFP2 (LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 2) (CFP-2) | preprotein translocase subunit YajC | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB1 | POSSIBLE CONSERVED LIPOPROTEIN LPQE | PROBABLE BIFUNCTIONAL MEMBRANE-ASSOCIATED PENICILLIN-BINDING PROTEIN 1A/1B PONA2 | SECRETED MPT51/MPB51 ANTIGEN PROTEIN FBPD (MPT51/MPB51 ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) (85C) | SECRETED ANTIGEN 85-A FBPA (MYCOLYL TRANSFERASE 85A) (FIBRONECTIN-BINDING PROTEIN A) (ANTIGEN 85 COMPLEX A) | PROBABLE CONSERVED MEMBRANE PROTEIN |
| 35 | 22 | 39 | -38.969 | 0.369 | 
Residual = 0.369 |  | 
CAtTTcaCTccgGCtncGa | 
CgcTatCGtTgacnT |  | ORF04174 ORF05088 Rv0262c Rv0724 Rv1829 Rv2053c Rv2091c Rv2115c Rv2175c Rv2663 Rv2708c Rv2743c Rv3197 Rv3241c Rv3802c Rv3815c Rv3863 Rv3864 Rv3868 Rv3879c Rv3880c Rv3881c | aac sppA fxsA | AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE AAC (AAC(2')-IC) | POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) | hypothetical protein | FxsA | Probable membrane protein | Probable ATPase | conserved hypothetical regulatory protein | POSSIBLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED MEMBRANE PROTEIN | POSSIBLE ACYLTRANSFERASE | HYPOTHETICAL ALANINE RICH PROTEIN | HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN | CONSERVED HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN |
| 36 | 28 | 36 | -26.914 | 0.469 | 
Residual = 0.469 |  | 
GgAcGcAGAGTCAACGngtaA | 
ACcGACgTctgGATgAGCATnTT |  | Rv0338c Rv0431 Rv0504c Rv0638 Rv0639 Rv0640 Rv0641 Rv0702 Rv0716 Rv0873 Rv0905 Rv1009 Rv1093 Rv1156 Rv1174c Rv1390 Rv1391 Rv1789 Rv1943c Rv2103c Rv2104c Rv2222c Rv2801c Rv2916c Rv2971 Rv3396c Rv3709c Rv3878 | secE nusG rplK rplA rplD rplE fadE10 echA6 rpfB glyA TB8.4 rpoZ dfp PPE26 glnA2 ffh guaA ask | PROBABLE IRON-SULFUR-BINDING REDUCTASE | PUTATIVE TUBERCULIN RELATED PEPTIDE | hypothetical protein | preprotein translocase subunit SecE | transcription antitermination protein NusG | 50S ribosomal protein L11 | 50S ribosomal protein L1 | 50S ribosomal protein L4 | 50S ribosomal protein L5 | PROBABLE ACYL-CoA DEHYDROGENASE FADE10 | enoyl-CoA hydratase | Probable resuscitation-promoting factor rpfB | serine hydroxymethyltransferase | LOW MOLECULAR WEIGHT T-CELL ANTIGEN TB8.4 | DNA-directed RNA polymerase subunit omega | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase | PPE FAMILY PROTEIN | PROBABLE GLUTAMINE SYNTHETASE GLNA2 (GLUTAMINE SYNTHASE) (GS-II) | PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR HOMOLOG) (SRP PROTEIN) | PROBABLE OXIDOREDUCTASE | bifunctional GMP synthase/glutamine amidotransferase protein | aspartate kinase | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN |
| 37 | 21 | 37 | -35.437 | 0.377 | 
Residual = 0.377 |  | 
CgTaTtGAaCgAtT | 
gAcCAgAC |  | ORF05164 Rv0496 Rv0501 Rv0510 Rv1076 Rv1194c Rv1396c Rv1707 Rv1826 Rv2398c Rv2399c Rv2435c Rv2594c Rv3025c Rv3221c Rv3341 Rv3342 Rv3360 Rv3370c Rv3613c Rv3753c | galE2 hemC lipU PE_PGRS25 gcvH cysW cysT ADENYLYL-OR GUANYLYL- ruvC iscS TB7.3 metX METHYLASE dnaE2 | hypothetical protein | POSSIBLE UDP-GLUCOSE 4-EPIMERASE GALE2 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) | porphobilinogen deaminase | POSSIBLE LIPASE LIPU | PE-PGRS FAMILY PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | glycine cleavage system protein H | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYSW | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYST | PROBABLE CYCLASE (ADENYLYL-OR GUANYLYL-)(ADENYLATE-OR GUANYLATE-) | Holliday junction resolvase | PROBABLE CYSTEINE DESULFURASE ISCS (NIFS PROTEIN HOMOLOG) (NITROGENASE METALLOCLUSTERS BIOSYNTHESIS PROTEIN NIFS) | homoserine O-acetyltransferase | POSSIBLE METHYLTRANSFERASE (METHYLASE) | error-prone DNA polymerase |
| 38 | 22 | 35 | -42.311 | 0.334 | 
Residual = 0.334 |  | 
ACACAAA | 
GtCGgCGAcCg |  | ORF02877 ORF08109 Rv0238 Rv0476 Rv1082 Rv1083 Rv1102c Rv1219c Rv1288 Rv1574 Rv1584c Rv1929c Rv2034 Rv2304c Rv2374c Rv2516c Rv2517c Rv2650c Rv2878c Rv3182 Rv3424c Rv3610c | PROBABLY TETR-FAMILY mca hrcA mpt53 ftsH | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase) | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | Probable phiRV1 phage related protein | Possible phiRv1 phage protein | Probable ArsR-type repressor protein | heat-inducible transcription repressor | POSSIBLE phiRv2 PROPHAGE PROTEIN | SOLUBLE SECRETED ANTIGEN MPT53 PRECURSOR | MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) |
| 39 | 31 | 35 | -32.059 | 0.416 | 
Residual = 0.416 |  | 
AcgTGAcCgAGAtCtTgACgacgA | 
TtGgcgaCnAcCgg |  | Rv0080 Rv0163 Rv0167 Rv0184 Rv0232 Rv0233 Rv0855 Rv1557 Rv1997 Rv2029c Rv2498c Rv2499c Rv2501c Rv2620c Rv2624c Rv2792c Rv2832c Rv2978c Rv3030 Rv3074 Rv3086 Rv3159c Rv3160c Rv3161c Rv3238c Rv3533c Rv3568c Rv3569c Rv3573c Rv3586 Rv3827c | yrbE1A PROBABLY TETR/ACRR-FAMILY nrdB far mmpL6 ctpF pfkB citE accA1 ugpC adhD PPE53 PROBABLY TETR-FAMILY PPE62 bphC bphD fadE34 | hypothetical protein | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) | ribonucleotide-diphosphate reductase subunit beta | PROBABLE FATTY-ACID-CoA RACEMASE FAR | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL6 | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF | Probable phosphofructokinase PfkB (PHOSPHOHEXOKINASE) | PROBABLE CITRATE (PRO-3S)-LYASE (BETA SUBUNIT) CITE (CITRASE) (CITRATASE) (CITRITASE) (CITRIDESMOLASE) (CITRASE ALDOLASE) | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | POSSIBLE RESOLVASE | PROBABLE Sn-GLYCEROL-3-PHOSPHATE TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER UGPC | PROBABLE TRANSPOSASE | PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE ADHD (ALDEHYDE REDUCTASE) | PPE FAMILY PROTEIN | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | POSSIBLE DIOXYGENASE | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | PROBABLE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC (23OHBP OXYGENASE) (2,3-DIHYDROXYBIPHENYL DIOXYGENASE) (2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE) (DHBD) | 2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE BPHD | PROBABLE ACYL-CoA DEHYDROGENASE FADE34 | POSSIBLE TRANSPOSASE |
| 40 | 18 | 39 | -14.907 | 0.556 | 
Residual = 0.556 |  | 
TTGatngAccGCgtAAATC | 
aaAGGcCaAgT |  | ORF00796 ORF00917 ORF01217 ORF01824 ORF06096 ORF07004 ORF08429 ORFD0398 Rv0118c Rv0578c Rv0755c Rv0996 Rv2187 Rv2332 Rv2351c Rv2729c Rv3205c Rv3755c | oxcA PE_PGRS7 PPE12 fadD15 mez plcA | putative oxalyl-CoA decarboxylase | PE-PGRS FAMILY PROTEIN | PPE FAMILY PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | Probable long-chain-fatty-acid-CoA ligase fadD15 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) | PROBABLE [NAD] DEPENDENT MALATE OXIDOREDUCTASE MEZ (MALIC ENZYME) (NAD-MALIC ENZYME) (MALATE DEHYDROGENASE (OXALOACETATE DECARBOXYLATING)) (PYRUVIC-MALIC CARBOXYLASE) (NAD-ME) | PROBABLE MEMBRANE-ASSOCIATED PHOSPHOLIPASE C 1 PLCA (MTP40 ANTIGEN) | PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE VALINE AND LEUCINE RICH PROTEIN | hypothetical protein |
| 41 | 14 | 35 | -68.376 | 0.266 | 
Residual = 0.266 |  | 
aGCgCnnCGAGAaCgngcTGG | 
CCAaCGCataggAgnTGCtAGAaa |  | Rv1584c Rv1991c Rv1992c Rv2374c Rv2516c Rv2517c Rv2554c Rv2650c Rv2651c Rv2665 Rv3182 Rv3188 Rv3334 Rv3504 | ctpG hrcA PROBABLY MERR-FAMILY fadE26 | Possible phiRv1 phage protein | hypothetical protein | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE G CTPG | heat-inducible transcription repressor | Holliday junction resolvase-like protein | POSSIBLE phiRv2 PROPHAGE PROTEIN | POSSIBLE phiRv2 PROPHAGE PROTEASE | HYPOTHETICAL ARGININE RICH PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MERR-FAMILY) | PROBABLE ACYL-CoA DEHYDROGENASE FADE26 |
| 42 | 24 | 38 | -34.911 | 0.415 | 
Residual = 0.415 |  | 
GgCGCTGccGtcctTcgACgaCG | 
ACgACGAgnTgGCCgCnCAagaC |  | ORF08429 Rv0272c Rv0273c Rv0556 Rv0557 Rv1107c Rv1181 Rv1183 Rv1184c Rv1200 Rv1217c Rv1410c Rv1522c Rv2159c Rv2160c Rv2163c Rv2218 Rv2409c Rv2483c Rv2933 Rv2994 Rv3487c Rv3577 Rv3824c | pimB xseB pks4 mmpL10 mmpL12 pbpB lipA plsC ppsC lipF papA1 | hypothetical protein | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | MANNOSYLTRANSFERASE PIMB | exodeoxyribonuclease VII small subunit | PROBABLE POLYKETIDE BETA-KETOACYL SYNTHASE PKS4 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL10 | POSSIBLE EXPORTED PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN | PROBABLE TETRONASIN-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | AMINOGLYCOSIDES/TETRACYCLINE-TRANSPORT INTEGRAL MEMBRANE PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL12 | Probable penicillin-binding membrane protein pbpB | lipoyl synthase | POSSIBLE TRANSMEMBRANE PHOSPHOLIPID BIOSYNTHESIS BIFUNCTIONNAL ENZYME PLSC: PUTATIVE L-3-PHOSPHOSERINE PHOSPHATASE (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSP) (PSPASE) + 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE (1-AGP ACYLTRANSFERASE) (1-AGPAT) (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE) (LPAAT) | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSC | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | PROBABLE ESTERASE/LIPASE LIPF | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA1 |
| 43 | 18 | 39 | -56.528 | 0.308 | 
Residual = 0.308 |  | 
tcGccgcGcTgtTCGccGcnG | 
CGGcGCtGGCgacgcTGanc |  | ORF08307 Rv0640 Rv0714 Rv1409 Rv2021c Rv2127 Rv2128 Rv2404c Rv2534c Rv2903c Rv2909c Rv2916c Rv3319 Rv3363c Rv3686c Rv3715c Rv3716c Rv3923c | rplK rplN ribG ansP1 lepA efp lepB rpsP ffh sdhB recR rnpA | 50S ribosomal protein L11 | 50S ribosomal protein L14 | PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase) | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | Probable L-asparagine permease ansP1 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | GTP-binding protein LepA | elongation factor P | PROBABLE SIGNAL PEPTIDASE I LEPB (SPASE I) (LEADER PEPTIDASE I). | 30S ribosomal protein S16 | PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR HOMOLOG) (SRP PROTEIN) | succinate dehydrogenase iron-sulfur subunit | hypothetical protein | recombination protein RecR | ribonuclease P |
| 44 | 21 | 38 | -33.926 | 0.417 | 
Residual = 0.417 |  | 
tGTTcGGcGacgTggnT | 
TCaTtgGGCGAcGaT |  | Rv0200 Rv0220 Rv0222 Rv0314c Rv0317c Rv0460 Rv0540 Rv0890c Rv0935 Rv0959 Rv1240 Rv1547 Rv1590 Rv1591 Rv2048c Rv2732c Rv3096 Rv3146 Rv3148 Rv3233c Rv3678c | lipC echA1 glpQ2 PROBABLY LUXR-FAMILY pstC1 mdh dnaE pks12 nuoB nuoD | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE ESTERASE LIPC | enoyl-CoA hydratase | POSSIBLE CONSERVED MEMBRANE PROTEIN | POSSIBLE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE GLPQ2 (GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE) | CONSERVED HYDROPHOBIC PROTEIN | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) | PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC1 | malate dehydrogenase | DNA polymerase III subunit alpha | PROBABLE TRANSMEMBRANE PROTEIN | Probable polyketide synthase pks12 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | NADH dehydrogenase subunit B | NADH dehydrogenase subunit D |
| 45 | 30 | 40 | -28.578 | 0.412 | 
Residual = 0.412 |  | 
TTCcgGCACTTcGGtGAcaAC | 
AATTGAAT |  | ORF05167 ORF05235 ORFD0093 ORFD0232 Rv0346c Rv0814c Rv1187 Rv1440 Rv1448c Rv1674c Rv1986 Rv2129c Rv2136c Rv2254c Rv2476c Rv2535c Rv2565 Rv2627c Rv2628 Rv2677c Rv2683 Rv2714 Rv3325 Rv3331 Rv3371 Rv3450c Rv3689 Rv3690 Rv3691 Rv3714c | ansP2 sseC2 rocA secG tal uppP gdh pepQ hemY sugI | POSSIBLE L-ASPARAGINE PERMEASE ANSP2 (L-ASPARAGINE TRANSPORT PROTEIN) | CONSERVED HYPOTHETICAL PROTEIN SSEC2 | PROBABLE PYRROLINE-5-CARBOXYLATE DEHYDROGENASE ROCA | preprotein translocase subunit SecG | transaldolase | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | short chain dehydrogenase | undecaprenyl pyrophosphate phosphatase | Probable integral membrane protein | PROBABLE NAD-DEPENDENT GLUTAMATE DEHYDROGENASE GDH (NAD-GDH) (NAD-DEPENDENT GLUTAMIC DEHYDROGENASE) | PROBABLE CYTOPLASMIC PEPTIDASE PEPQ | hypothetical protein | protoporphyrinogen oxidase | CONSERVED HYPOTHETICAL ALANINE AND LEUCINE RICH PROTEIN | PROBABLE TRANSPOSASE | PROBABLE SUGAR-TRANSPORT INTEGRAL MEMBRANE PROTEIN SUGI | PROBABLE CONSERVED MEMBRANE PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| 46 | 29 | 35 | -28.733 | 0.457 | 
Residual = 0.457 |  | 
TAnacTTAcTgGcTt | 
CGaTGCTGGcCGAActGGT |  | Rv0196 Rv0197 Rv0232 Rv0450c Rv0451c Rv0846c Rv1057 Rv1245c Rv1442 Rv1674c Rv1681 Rv2016 Rv2017 Rv2379c Rv2380c Rv2381c Rv2386c Rv2619c Rv2620c Rv2621c Rv2677c Rv2794c Rv3084 Rv3085 Rv3088 Rv3407 Rv3730c Rv3862c Rv3879c | PROBABLY TETR/ACRR-FAMILY mmpL4 mmpS4 bisC moeX mbtF mbtE mbtD mbtI hemY lipR whiB6 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE OXIDOREDUCTASE | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL4 | PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 | PROBABLE OXIDASE | hypothetical protein | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE | PROBABLE BIOTIN SULFOXIDE REDUCTASE BISC (BDS reductase) (BSO reductase) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEX | PEPTIDE SYNTHETASE MBTF (PEPTIDE SYNTHASE) | PEPTIDE SYNTHETASE MBTE (PEPTIDE SYNTHASE) | POLYKETIDE SYNTHETASE MBTD (POLYKETIDE SYNTHASE) | salicylate synthase MbtI | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | protoporphyrinogen oxidase | PROBABLE ACETYL-HYDROLASE/ESTERASE LIPR | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB6 | HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN |
| 47 | 25 | 38 | -25.852 | 0.440 | 
Residual = 0.440 |  | 
ACGGTAcCgcT | 
TCnCgCCaCnannGTgnTCGGg |  | ORF00401 Rv0263c Rv0264c Rv0520 Rv0608 Rv0610c Rv0748 Rv0805 Rv0885 Rv1009 Rv1031 Rv1169c Rv1636 Rv1649 Rv1660 Rv1869c Rv1891 Rv1892 Rv2050 Rv2182c Rv2225 Rv2465c Rv2785c Rv3489 Rv3651 | FRAGMENT rpfB kdpC PE11 TB15.3 pheS pks10 panB rpsO | hypothetical protein | POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) | Probable resuscitation-promoting factor rpfB | Probable Potassium-transporting ATPase C chain KDPC (Potassium-translocating ATPase C chain) (ATP phosphohydrolase [potassium-transporting] C chain) (Potassium binding and translocating subunit C) | PE FAMILY PROTEIN | IRON-REGULATED CONSERVED HYPOTHETICAL PROTEIN TB15.3 | phenylalanyl-tRNA synthetase subunit alpha | Possible chalcone synthase pks10 | Probable reductase | PROBABLE MEMBRANE PROTEIN | 1-acylglycerol-3-phosphate O-acyltransferase | 3-methyl-2-oxobutanoate hydroxymethyltransferase | ribose-5-phosphate isomerase B | 30S ribosomal protein S15 |
| 48 | 34 | 38 | -42.019 | 0.330 | 
Residual = 0.330 |  | 
TTtcTGaT | 
ccTnGgCaAAcCtGc |  | ORF00915 ORF03288 ORF04431 Rv0015c Rv0276 Rv0426c Rv0754 Rv0859 Rv1006 Rv1162 Rv1405c Rv1685c Rv1686c Rv1687c Rv1688 Rv1989c Rv2084 Rv2137c Rv2219 Rv2253 Rv2291 Rv2396 Rv2499c Rv2501c Rv2503c Rv2504c Rv2557 Rv2624c Rv2878c Rv3288c Rv3339c Rv3367 Rv3388 Rv3850 | pknA PE_PGRS11 fadA narH mpg sseB PE_PGRS41 accA1 scoB scoA mpt53 usfY icd1 PE_PGRS51 PE_PGRS52 | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) | hypothetical protein | POSSIBLE TRANSMEMBRANE PROTEIN | PE-PGRS FAMILY PROTEIN | acetyl-CoA acetyltransferase | PROBABLE RESPIRATORY NITRATE REDUCTASE (BETA CHAIN) NARH | PUTATIVE METHYLTRANSFERASE | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | 3-methyladenine DNA glycosylase | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | Possible secreted unknown protein | Probable thiosulfate sulfurtransferase SseB | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) | PROBABLE SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE (BETA SUBUNIT) SCOB (3-OXO-ACID:COA TRANSFERASE) (OXCT B) (SUCCINYL CoA:3-OXOACID CoA-TRANSFERASE) | PROBABLE SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE (ALPHA SUBUNIT) SCOA (3-OXO ACID:CoA TRANSFERASE) (OXCT A) (SUCCINYL-COA:3-OXOACID-COENZYME A TRANSFERASE) | SOLUBLE SECRETED ANTIGEN MPT53 PRECURSOR | PUTATIVE PROTEIN USFY | isocitrate dehydrogenase |
| 49 | 22 | 36 | -41.591 | 0.368 | 
Residual = 0.368 |  | 
GnTTgGnTTtCnGCTnnAaC | 
CAAccgaagGGAGCaAAgAAgaA |  | ORFD0093 Rv0367c Rv0477 Rv0627 Rv1955 Rv1956 Rv2104c Rv2254c Rv2255c Rv2432c Rv2887 Rv2913c Rv3188 Rv3189 Rv3334 Rv3340 Rv3357 Rv3426 Rv3429 Rv3681c Rv3872 Rv3873 | D-AMINO ACID HYDROLASE PROBABLY MERR-FAMILY metC PPE58 PPE59 whiB4 PE35 PPE68 | hypothetical protein | POSSIBLE CONSERVED SECRETED PROTEIN | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | Probable integral membrane protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE D-AMINO ACID AMINOHYDROLASE (D-AMINO ACID HYDROLASE) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MERR-FAMILY) | O-acetylhomoserine aminocarboxypropyltransferase | PPE FAMILY PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB4 | PE FAMILY-RELATED PROTEIN |
| 50 | 32 | 38 | -33.811 | 0.371 | 
Residual = 0.371 |  | 
tCGGTTtGTAcGaCcA | 
CgggggTgaCtacgCTGgcgg |  | Rv0281 Rv0934 Rv1015c Rv1071c Rv1294 Rv1295 Rv1324 Rv1437 Rv1511 Rv1597 Rv1636 Rv1836c Rv1870c Rv2127 Rv2128 Rv2475c Rv2476c Rv2534c Rv2587c Rv2714 Rv2725c Rv2869c Rv2903c Rv2904c Rv2907c Rv3043c Rv3044 Rv3283 Rv3307 Rv3603c Rv3709c Rv3903c | pstS1 rplY echA9 thrA thrC pgk gmdA TB15.3 ansP1 gdh efp secD hflX lepB rplS rimM ctaD fecB sseA deoD ask | hypothetical protein | PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS1 (PBP-1) (PSTS1) | 50S ribosomal protein L25/general stress protein Ctc | enoyl-CoA hydratase | homoserine dehydrogenase | threonine synthase | POSSIBLE THIOREDOXIN | phosphoglycerate kinase | GDP-D-mannose dehydratase gmdA (GDP-mannose 4,6 dehydratase) (GMD) | IRON-REGULATED CONSERVED HYPOTHETICAL PROTEIN TB15.3 | Probable L-asparagine permease ansP1 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE NAD-DEPENDENT GLUTAMATE DEHYDROGENASE GDH (NAD-GDH) (NAD-DEPENDENT GLUTAMIC DEHYDROGENASE) | elongation factor P | preprotein translocase subunit SecD | CONSERVED HYPOTHETICAL ALANINE AND LEUCINE RICH PROTEIN | PROBABLE GTP-BINDING PROTEIN HFLX | PROBABLE SIGNAL PEPTIDASE I LEPB (SPASE I) (LEADER PEPTIDASE I). | 50S ribosomal protein L19 | 16S rRNA-processing protein | PROBABLE CYTOCHROME C OXIDASE POLYPEPTIDE I CTAD (CYTOCHROME AA3 SUBUNIT 1) | PROBABLE FEIII-DICITRATE-BINDING PERIPLASMIC LIPOPROTEIN FECB | PROBABLE THIOSULFATE SULFURTRANSFERASE SSEA (RHODANESE) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) | purine nucleoside phosphorylase | aspartate kinase | HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN |
| 51 | 20 | 35 | -51.051 | 0.287 | 
Residual = 0.287 |  | 
GcTTGcTGTaC | 
TGccAtccGtTgCG |  | ORFD0315 ORFD0316 Rv0050 Rv0163 Rv0382c Rv0605 Rv0609 Rv0669c Rv0829 Rv1446c Rv1448c Rv1836c Rv1840c Rv2487c Rv2791c Rv3030 Rv3115 Rv3137 Rv3157 Rv3488 | ponA1 pyrE FRAGMENT opcA tal PE_PGRS34 PE_PGRS42 nuoM | PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) | hypothetical protein | orotate phosphoribosyltransferase | POSSIBLE RESOLVASE | POSSIBLE HYDROLASE | POSSIBLE TRANSPOSASE (FRAGMENT) | PUTATIVE OXPP CYCLE PROTEIN OPCA | transaldolase | PE-PGRS FAMILY PROTEIN | PROBABLE TRANSPOSASE | PROBABLE MONOPHOSPHATASE | NADH dehydrogenase subunit M |
| 52 | 24 | 37 | -25.049 | 0.481 | 
Residual = 0.481 |  | 
AtcGtCGTtat | 
TGGAAcTcGA |  | ORF04372 ORF05444 Rv0571c Rv0960 Rv1065 Rv1239c Rv1331 Rv1487 Rv1862 Rv1890c Rv2133c Rv2134c Rv2218 Rv2359 Rv2365c Rv2551c Rv2558 Rv2575 Rv2653c Rv3159c Rv3416 Rv3437 Rv3755c Rv3757c | corA clpS adhA lipA furB PPE53 whiB3 proW | hypothetical protein | POSSIBLE MAGNESIUM AND COBALT TRANSPORT TRANSMEMBRANE PROTEIN CORA | ATP-dependent Clp protease adaptor protein ClpS | Probable alcohol dehydrogenase adhA | lipoyl synthase | PROBABLE FERRIC UPTAKE REGULATION PROTEIN FURB | POSSIBLE CONSERVED MEMBRANE GLYCINE RICH PROTEIN | POSSIBLE phiRv2 PROPHAGE PROTEIN | PPE FAMILY PROTEIN | TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB3 | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW |
| 53 | 24 | 40 | -30.555 | 0.412 | 
Residual = 0.412 |  | 
aAGgTCACgtTGAcG | 
AAaACcGAtG |  | ORF03287 ORF04431 ORF08434 ORFD0316 ORFD0398 Rv0176 Rv0250c Rv0333 Rv0424c Rv0426c Rv0433 Rv0557 Rv0610c Rv0734 Rv1842c Rv1882c Rv1967 Rv2084 Rv2406c Rv3148 Rv3461c Rv3462c Rv3780 Rv3898c | pimB mapA mce3B nuoD rpmJ infA | PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN | hypothetical protein | POSSIBLE TRANSMEMBRANE PROTEIN | MANNOSYLTRANSFERASE PIMB | methionine aminopeptidase | short chain dehydrogenase | MCE-FAMILY PROTEIN MCE3B | NADH dehydrogenase subunit D | 50S ribosomal protein L36 | translation initiation factor IF-1 |
| 54 | 14 | 37 | -43.799 | 0.349 | 
Residual = 0.349 |  | 
GCaAGgTCAAC | 
AATTGgGTAT |  | Rv0342 Rv0410c Rv0411c Rv0412c Rv0486 Rv0865 Rv1600 Rv1601 Rv1602 Rv1603 Rv1605 Rv1606 Rv2234 Rv2235 | iniA pknG glnH mog hisC1 hisB hisH hisA hisF hisI ptpA | ISONIAZID INDUCTIBLE GENE PROTEIN INIA | SERINE/THREONINE-PROTEIN KINASE PKNG (PROTEIN KINASE G) (STPK G) | PROBABLE GLUTAMINE-BINDING LIPOPROTEIN GLNH (GLNBP) | POSSIBLE CONSERVED MEMBRANE PROTEIN | MANNOSYLTRANSFERASE | PROBABLE MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN | histidinol-phosphate aminotransferase | imidazoleglycerol-phosphate dehydratase | imidazole glycerol phosphate synthase subunit HisH | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | imidazole glycerol phosphate synthase subunit HisF | phosphoribosyl-AMP cyclohydrolase | PHOSPHOTYROSINE PROTEIN PHOSPHATASE PTPA (PROTEIN-TYROSINE-PHOSPHATASE) (PTPase) (LMW PHOSPHATASE) | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| 55 | 22 | 38 | -33.945 | 0.443 | 
Residual = 0.443 |  | 
GgtgTGGcTgCGaCaaCGtGtaGT | 
CAtGTTTgCGattA |  | Rv0038 Rv0486 Rv0491 Rv1076 Rv1594 Rv1595 Rv1620c Rv1621c Rv1622c Rv1623c Rv1625c Rv1653 Rv1654 Rv1655 Rv1845c Rv2444c Rv2537c Rv2539c Rv2540c Rv3212 Rv3411c Rv3627c | regX3 lipU nadA nadB cydC cydD cydB cydA cya argJ argB argD rne aroD aroK aroF guaB2 | hypothetical protein | MANNOSYLTRANSFERASE | TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) | POSSIBLE LIPASE LIPU | quinolinate synthetase | L-aspartate oxidase | PROBABLE 'COMPONENT LINKED WITH THE ASSEMBLY OF CYTOCHROME' TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER CYDC | PROBABLE 'COMPONENT LINKED WITH THE ASSEMBLY OF CYTOCHROME' TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER CYDD | Probable integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (Cytochrome BD-I oxidase subunit II) | Probable integral membrane cytochrome D ubiquinol oxidase (subunit I) cydA (Cytochrome BD-I oxidase subunit I) | MEMBRANE-ANCHORED ADENYLYL CYCLASE CYA (ATP PYROPHOSPHATE-LYASE) (ADENYLATE CYCLASE) | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein | acetylglutamate kinase | acetylornithine aminotransferase | POSSIBLE RIBONUCLEASE E RNE | 3-dehydroquinate dehydratase | shikimate kinase | chorismate synthase | CONSERVED HYPOTHETICAL ALANINE VALINE RICH PROTEIN | inositol-5-monophosphate dehydrogenase |
| 56 | 22 | 36 | -41.140 | 0.329 | 
Residual = 0.329 |  | 
catCcGaccctGntgnnGTtCa | 
AaGcAccGCcGCtACGA |  | ORF04157 Rv0429c Rv0545c Rv0546c Rv0567 Rv0636 Rv0637 Rv0683 Rv0703 Rv0704 Rv0718 Rv0719 Rv0720 Rv0732 Rv1241 Rv2067c Rv2952 Rv2953 Rv2996c Rv3524 Rv3722c Rv3737 | def pitA rpsG rplW rplB rpsH rplF rplR secY METHYLASE serA1 | peptide deformylase | PROBABLE LOW-AFFINITY INORGANIC PHOSPHATE TRANSPORTER INTEGRAL MEMBRANE PROTEIN PITA | hypothetical protein | PROBABLE METHYLTRANSFERASE/METHYLASE | 30S ribosomal protein S7 | 50S ribosomal protein L23 | 50S ribosomal protein L2 | 30S ribosomal protein S8 | 50S ribosomal protein L6 | 50S ribosomal protein L18 | preprotein translocase subunit SecY | POSSIBLE METHYLTRANSFERASE (METHYLASE) | PROBABLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE SERA1 (PGDH) | PROBABLE CONSERVED MEMBRANE PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| 57 | 25 | 36 | -32.714 | 0.411 | 
Residual = 0.411 |  | 
TCcagccCGGC | 
GCAATGCGngnTtGGcTT |  | ORF07003 Rv0464c Rv0465c Rv0485 Rv1103c Rv1585c Rv1796 Rv1955 Rv1956 Rv1957 Rv1959c Rv2207 Rv2208 Rv2254c Rv2453c Rv2454c Rv2595 Rv2606c Rv2642 Rv2707 Rv2887 Rv2987c Rv3485c Rv3490 Rv3862c | mycP5 cobT cobS mobA PROBABLY ARSR-FAMILY leuD otsA whiB6 | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | Possible phage phiRv1 protein | PROBABLE PROLINE RICH MEMBRANE-ANCHORED MYCOSIN MYCP5 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-5) | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | cobalamin synthase | Probable integral membrane protein | molybdopterin-guanine dinucleotide biosynthesis protein A | 2-oxoglutarate ferredoxin oxidoreductase subunit beta | pyridoxine biosynthesis protein | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN | isopropylmalate isomerase small subunit | short chain dehydrogenase | PROBABLE ALPHA, ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] OTSA (TREHALOSE-6-PHOSPHATE SYNTHASE) (UDP-GLUCOSE-GLUCOSEPHOSPHATE GLUCOSYLTRANSFERASE) (TREHALOSEPHOSPHATE-UDP GLUCOSYLTRANSFERASE) (TREHALOSE-6-PHOSPHATE SYNTHETASE) (TREHALOSE-PHOSPHATE SYNTHASE) (TREHALOSE-PHOSPHATE SYNTHETASE) (TRANSGLUCOSYLASE) (TREHALOSEPHOSPHATE-UDP GLUCOSYL TRANSFERASE) | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB6 |
| 58 | 21 | 38 | -44.162 | 0.354 | 
Residual = 0.354 |  | 
CGAcgACGgtCAgGTCcACt | 
TgaACcCcGAtCtGaAGGAGtC |  | ORF03128 Rv0199 Rv0440 Rv0500 Rv0554 Rv0637 Rv0652 Rv0716 Rv1386 Rv1387 Rv1400c Rv1427c Rv2062c Rv2214c Rv2229c Rv2448c Rv2883c Rv2908c Rv2996c Rv3624c Rv3628 | groEL proC bpoC rplL rplE PE15 PPE20 lipI fadD12 cobN ephD valS pyrH serA1 hpt ppa | PROBABLE CONSERVED MEMBRANE PROTEIN | chaperonin GroEL | pyrroline-5-carboxylate reductase | POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE) | hypothetical protein | 50S ribosomal protein L7/L12 | 50S ribosomal protein L5 | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | PROBABLE LIPASE LIPH | acyl-CoA synthetase | cobaltochelatase | short chain dehydrogenase | valyl-tRNA synthetase | uridylate kinase | PROBABLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE SERA1 (PGDH) | hypoxanthine-guanine phosphoribosyltransferase | inorganic pyrophosphatase |
| 59 | 23 | 37 | -51.231 | 0.343 | 
Residual = 0.343 |  | 
TCAGTgAAtGATcACnCACCgaat | 
CCAAaAaAttCgtGC |  | Rv0001 Rv0679c Rv0875c Rv1107c Rv1163 Rv1180 Rv1181 Rv1183 Rv1620c Rv1621c Rv1622c Rv1623c Rv1625c Rv1639c Rv1640c Rv2498c Rv2499c Rv2501c Rv3087 Rv3088 Rv3089 Rv3577 Rv3867 | dnaA xseB narJ pks3 pks4 mmpL10 cydC cydD cydB cydA cya lysS citE accA1 fadD13 | chromosomal replication initiation protein | CONSERVED HYPOTHETICAL THREONINE RICH PROTEIN | POSSIBLE CONSERVED EXPORTED PROTEIN | exodeoxyribonuclease VII small subunit | PROBABLE RESPIRATORY NITRATE REDUCTASE (DELTA CHAIN) NARJ | PROBABLE POLYKETIDE BETA-KETOACYL SYNTHASE PKS3 | PROBABLE POLYKETIDE BETA-KETOACYL SYNTHASE PKS4 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL10 | PROBABLE 'COMPONENT LINKED WITH THE ASSEMBLY OF CYTOCHROME' TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER CYDC | PROBABLE 'COMPONENT LINKED WITH THE ASSEMBLY OF CYTOCHROME' TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER CYDD | Probable integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (Cytochrome BD-I oxidase subunit II) | Probable integral membrane cytochrome D ubiquinol oxidase (subunit I) cydA (Cytochrome BD-I oxidase subunit I) | MEMBRANE-ANCHORED ADENYLYL CYCLASE CYA (ATP PYROPHOSPHATE-LYASE) (ADENYLATE CYCLASE) | hypothetical protein | lysyl-tRNA synthetase | PROBABLE CITRATE (PRO-3S)-LYASE (BETA SUBUNIT) CITE (CITRASE) (CITRATASE) (CITRITASE) (CITRIDESMOLASE) (CITRASE ALDOLASE) | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) | PROBABLE CHAIN-FATTY-ACID-CoA LIGASE FADD13 (FATTY-ACYL-CoA SYNTHETASE) |
| 60 | 20 | 35 | -32.524 | 0.407 | 
Residual = 0.407 |  | 
TgGAcggCGng | 
aTGCCATC |  | Rv0177 Rv0433 Rv1172c Rv1195 Rv1196 Rv1352 Rv1361c Rv1612 Rv1848 Rv2138 Rv2238c Rv2239c Rv2429 Rv2808 Rv2836c Rv2844 Rv2858c Rv3598c Rv3646c Rv3737 | PE12 PE13 PPE18 PPE19 trpB ureA lppL ahpE ahpD dinF aldC lysS topA | PROBABLE CONSERVED MCE ASSOCIATED PROTEIN | hypothetical protein | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | tryptophan synthase subunit beta | urease subunit gamma | Probable conserved lipoprotein LppL | Probable peroxiredoxin AhpE | ALKYL HYDROPEROXIDE REDUCTASE D PROTEIN AHPD (ALKYL HYDROPEROXIDASE D) | POSSIBLE DNA-DAMAGE-INDUCIBLE PROTEIN F DINF | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN | PROBABLE ALDEHYDE DEHYDROGENASE ALDC | lysyl-tRNA synthetase | DNA topoisomerase I | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| 61 | 13 | 37 | -56.261 | 0.282 | 
Residual = 0.282 |  | 
GagGTTGA | 
ctcgccanCgaGntGACCcgA |  | ORFD0043 Rv0432 Rv0642c Rv0732 Rv0761c Rv1078 Rv1111c Rv1240 Rv2951c Rv3224 Rv3631 Rv3678c Rv3726 | sodC mmaA4 secY adhB pra mdh POSSIBLY GLYCOSYLTRANSFERASE | PROBABLE PERIPLASMIC SUPEROXIDE DISMUTASE [CU-ZN] SODC | METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) | preprotein translocase subunit SecY | POSSIBLE ZINC-CONTAINING ALCOHOL DEHYDROGENASE NAD DEPENDENT ADHB | Probable Proline-rich antigen homolog pra | hypothetical protein | malate dehydrogenase | POSSIBLE OXIDOREDUCTASE | short chain dehydrogenase | POSSIBLE TRANSFERASE (POSSIBLY GLYCOSYLTRANSFERASE) | POSSIBLE DEHYDROGENASE |
| 62 | 32 | 38 | -33.710 | 0.400 | 
Residual = 0.400 |  | 
ngcTcGCcgacGtGAtcGcC | 
tCanCaAcGtcnanGgTgTCn |  | Rv0058 Rv0198c Rv0227c Rv0241c Rv0708 Rv1282c Rv1502 Rv2062c Rv2080 Rv2082 Rv2101 Rv2244 Rv2246 Rv2276 Rv2335 Rv2404c Rv2453c Rv2509 Rv2822c Rv3150 Rv3153 Rv3295 Rv3307 Rv3671c Rv3673c Rv3794 Rv3799c Rv3800c Rv3801c Rv3835 Rv3836 Rv3915 | dnaB rplP oppC cobN lppJ helZ acpP kasB cyp121 cysE lepA mobA nuoF nuoI PROBABLY TETR-FAMILY deoD THIOL-DISULFIDE INTERCHANGE RELATED PROTEIN embA accD4 pks13 fadD32 | replicative DNA helicase | PROBABLE ZINC METALLOPROTEASE | PROBABLE CONSERVED MEMBRANE PROTEIN | hypothetical protein | 50S ribosomal protein L16 | PROBABLE OLIGOPEPTIDE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER OPPC | cobaltochelatase | Possible lipoprotein lppJ | PROBABLE HELICASE HELZ | acyl carrier protein | 3-oxoacyl-(acyl carrier protein) synthase II | CYTOCHROME P450 121 CYP121 | PROBABLE SERINE ACETYLTRANSFERASE CYSE (SAT) | GTP-binding protein LepA | molybdopterin-guanine dinucleotide biosynthesis protein A | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE | PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN F) | NADH dehydrogenase subunit I | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | purine nucleoside phosphorylase | POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE | POSSIBLE MEMBRANE-ANCHORED THIOREDOXIN-LIKE PROTEIN (THIOL-DISULFIDE INTERCHANGE RELATED PROTEIN) | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBA (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) | PROBABLE PROPIONYL-CoA CARBOXYLASE BETA CHAIN 4 ACCD4 (PCCASE) (PROPANOYL-COA:CARBON DIOXIDE LIGASE) | POLYKETIDE SYNTHASE PKS13 | acyl-CoA synthetase | PROBABLE HYDROLASE |
| 63 | 20 | 35 | -44.953 | 0.348 | 
Residual = 0.348 |  | 
TgGtGTCaggaTgAcGATCtG | 
TGTGGCCGgtGATG |  | Rv0016c Rv0018c Rv0284 Rv0287 Rv0288 Rv0289 Rv0290 Rv0291 Rv0292 Rv0868c Rv1446c Rv1449c Rv1701 Rv1796 Rv1821 Rv3017c Rv3019c Rv3020c Rv3684 Rv3690 | pbpA ppp esxG esxH mycP3 moaD2 opcA tkt xerD mycP5 secA2 esxQ esxR esxS | PROBABLE PENICILLIN-BINDING PROTEIN PBPA | POSSIBLE SERINE/THREONINE PHOSPHATASE PPP | POSSIBLE CONSERVED MEMBRANE PROTEIN | ESAT-6 LIKE PROTEIN ESXG (CONSERVED HYPOTHETICAL PROTEIN TB9.8) | LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) | hypothetical protein | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D 2 MOAD2 (MOLYBDOPTERIN CONVERTING FACTOR SMALL SUBUNIT) (MOLYBDOPTERIN [MPT] CONVERTING FACTOR, SUBUNIT 1) | PUTATIVE OXPP CYCLE PROTEIN OPCA | transketolase | site-specific tyrosine recombinase XerD | PROBABLE PROLINE RICH MEMBRANE-ANCHORED MYCOSIN MYCP5 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-5) | preprotein translocase subunit SecA | ESAT-6 LIKE PROTEIN ESXQ (TB12.9) (ESAT-6 LIKE PROTEIN 8) | SECRETED ESAT-6 LIKE PROTEIN ESXR (TB10.3) (ESAT-6 LIKE PROTEIN 9) | ESAT-6 LIKE PROTEIN ESXS | PROBABLE LYASE | PROBABLE CONSERVED MEMBRANE PROTEIN |
| 64 | 33 | 36 | -29.341 | 0.447 | 
Residual = 0.447 |  | 
TGcTCGgC | 
ATGAtGAAaT |  | ORF03093 ORF06120 ORF08410 Rv0038 Rv0044c Rv0383c Rv0400c Rv0412c Rv0510 Rv0598c Rv0821c Rv0997 Rv1056 Rv1599 Rv1602 Rv1605 Rv1672c Rv1686c Rv1765c Rv1855c Rv2015c Rv2110c Rv2151c Rv2334 Rv2335 Rv2345 Rv2471 Rv2736c Rv2737c Rv2978c Rv3074 Rv3205c Rv3765c | fadE7 hemC phoY2 hisD hisH hisF prcB ftsQ cysK1 cysE aglA recX recA | hypothetical protein | POSSIBLE OXIDOREDUCTASE | POSSIBLE CONSERVED SECRETED PROTEIN | ACYL-CoA DEHYDROGENASE FADE7 | POSSIBLE CONSERVED MEMBRANE PROTEIN | porphobilinogen deaminase | PROBABLE PHOSPHATE-TRANSPORT SYSTEM TRANSCRIPTIONAL REGULATORY PROTEIN PHOY2 | histidinol dehydrogenase | imidazole glycerol phosphate synthase subunit HisH | imidazole glycerol phosphate synthase subunit HisF | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | proteasome (beta subunit) PrcB | POSSIBLE CELL DIVISION PROTEIN FTSQ | PROBABLE CYSTEINE SYNTHASE A CYSK1 (O-ACETYLSERINE SULFHYDRYLASE A) (O-ACETYLSERINE (THIOL)-LYASE A) (CSASE A) | PROBABLE SERINE ACETYLTRANSFERASE CYSE (SAT) | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE ALPHA-GLUCOSIDASE AGLA (MALTASE) (GLUCOINVERTASE) (GLUCOSIDOSUCRASE) (MALTASE-GLUCOAMYLASE) (LYSOSOMAL ALPHA-GLUCOSIDASE) (ACID MALTASE) | recombination regulator RecX | recombinase A | PROBABLE TRANSPOSASE | PROBABLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN |
| 65 | 28 | 38 | -26.610 | 0.492 | 
Residual = 0.492 |  | 
CAaATTTctgaGTACtGtcaAaC | 
TnAcnTtcGgTATggGTgnCt |  | ORF01151 ORF03118 Rv0313 Rv0676c Rv0677c Rv0678 Rv1042c Rv1149 Rv1855c Rv2163c Rv2164c Rv2165c Rv2166c Rv2256c Rv2369c Rv2389c Rv2390c Rv2527 Rv2620c Rv2694c Rv2816c Rv3065 Rv3161c Rv3533c Rv3573c Rv3653 Rv3765c Rv3863 | mmpL5 mmpS5 pbpB mraW rpfD mmr PPE62 fadE34 PE_PGRS61 | hypothetical protein | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL5 | POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 | PROBABLE IS LIKE-2 TRANSPOSASE | POSSIBLE TRANSPOSASE | POSSIBLE OXIDOREDUCTASE | Probable penicillin-binding membrane protein pbpB | PROBABLE CONSERVED PROLINE RICH MEMBRANE PROTEIN | S-adenosyl-methyltransferase MraW | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFD | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | MULTIDRUGS-TRANSPORT INTEGRAL MEMBRANE PROTEIN MMR | POSSIBLE DIOXYGENASE | PPE FAMILY PROTEIN | PROBABLE ACYL-CoA DEHYDROGENASE FADE34 | PE-PGRS FAMILY-RELATED PROTEIN | PROBABLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN | HYPOTHETICAL ALANINE RICH PROTEIN |
| 66 | 26 | 39 | -34.442 | 0.369 | 
Residual = 0.369 |  | 
GaTGccggTgCtGTt | 
TGtTTaCctAAT |  | ORF05040 Rv0002 Rv0013 Rv0317c Rv0466 Rv0500 Rv0714 Rv0715 Rv0871 Rv0909 Rv1379 Rv1380 Rv1400c Rv2120c Rv2561 Rv2741 Rv2876 Rv2908c Rv2909c Rv2950c Rv2999 Rv3029c Rv3686c Rv3739c Rv3788 Rv3803c | dnaN trpG glpQ2 proC rplN rplX cspB pyrR pyrB lipI PE_PGRS47 rpsP fadD29 lppY fixA PPE67 fbpD | DNA polymerase III subunit beta | para-aminobenzoate synthase component II | POSSIBLE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE GLPQ2 (GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE) | hypothetical protein | pyrroline-5-carboxylate reductase | 50S ribosomal protein L14 | 50S ribosomal protein L24 | PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB | pyrimidine regulatory protein PyrR | aspartate carbamoyltransferase catalytic subunit | PROBABLE LIPASE LIPH | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | PE-PGRS FAMILY PROTEIN | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | 30S ribosomal protein S16 | acyl-CoA synthetase | PROBABLE CONSERVED LIPOPROTEIN LPPY | PROBABLE ELECTRON TRANSFER FLAVOPROTEIN (BETA-SUBUNIT) FIXA (BETA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN SMALL SUBUNIT) (ETFSS) | PPE FAMILY PROTEIN | nucleoside diphosphate kinase regulator | SECRETED MPT51/MPB51 ANTIGEN PROTEIN FBPD (MPT51/MPB51 ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) (85C) |
| 67 | 26 | 38 | -34.644 | 0.396 | 
Residual = 0.396 |  | 
CGTTTGTGATcGC | 
AccTgTTcGgAgGTg |  | ORF00329 ORF00917 ORF01392.2 ORF03736.2 ORF06006 ORFD0070 Rv0279c Rv0505c Rv0578c Rv0742 Rv0752c Rv1091 Rv1243c Rv1452c Rv1536 Rv1989c Rv2162c Rv2291 Rv2552c Rv2816c Rv2879c Rv3315c Rv3367 Rv3388 Rv3595c Rv3866 | PE_PGRS4 serB1 PE_PGRS7 PE_PGRS8 fadE9 PE_PGRS22 PE_PGRS23 PE_PGRS28 ileS PE_PGRS38 sseB aroE cdd PE_PGRS51 PE_PGRS52 PE_PGRS59 | PE-PGRS FAMILY PROTEIN | POSSIBLE PHOSPHOSERINE PHOSPHATASE SERB1 (PSP) (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) | PROBABLE ACYL-CoA DEHYDROGENASE FADE9 | isoleucyl-tRNA synthetase | hypothetical protein | Probable thiosulfate sulfurtransferase SseB | shikimate 5-dehydrogenase | cytidine deaminase |
| 68 | 18 | 37 | -36.002 | 0.373 | 
Residual = 0.373 |  | 
ACagcGAAGTtGgcGAAAT | 
tGAAcAtCGct |  | ORFD0354 Rv0237 Rv0332 Rv0545c Rv0646c Rv0891c Rv0933 Rv1589 Rv1611 Rv1826 Rv2113 Rv2114 Rv2190c Rv2213 Rv2239c Rv2523c Rv2563 Rv3840 | lpqI pitA lipG pstB bioB trpC gcvH pepB acpS | PROBABLE CONSERVED LIPOPROTEIN LPQI | hypothetical protein | PROBABLE LOW-AFFINITY INORGANIC PHOSPHATE TRANSPORTER INTEGRAL MEMBRANE PROTEIN PITA | PROBABLE LIPASE/ESTERASE LIPG | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PSTB | biotin synthase | indole-3-glycerol-phosphate synthase | glycine cleavage system protein H | Probable integral membrane protein | leucyl aminopeptidase | 4'-phosphopantetheinyl transferase | PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER |
| 69 | 19 | 36 | -35.562 | 0.378 | 
Residual = 0.378 |  | 
CGAcGACcTcGGCGGCCAGC | 
AATTTA |  | ORF00385 Rv0400c Rv0724 Rv1082 Rv1415 Rv1416 Rv1846c Rv1862 Rv2053c Rv2325c Rv2345 Rv2359 Rv2500c Rv2675c Rv2676c Rv2686c Rv3257c Rv3568c Rv3609c | fadE7 sppA mca ribA2 ribH adhA fxsA furB fadE19 manB bphC folE | ACYL-CoA DEHYDROGENASE FADE7 | POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) | Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase) | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein | riboflavin synthase subunit beta | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | Probable alcohol dehydrogenase adhA | FxsA | hypothetical protein | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE FERRIC UPTAKE REGULATION PROTEIN FURB | POSSIBLE ACYL-CoA DEHYDROGENASE FADE19 (MMGC) | PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND ALANINE AND VALINE RICH PROTEIN ABC TRANSPORTER | phosphomannomutase/phosphoglucomutase | PROBABLE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC (23OHBP OXYGENASE) (2,3-DIHYDROXYBIPHENYL DIOXYGENASE) (2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE) (DHBD) | GTP cyclohydrolase I |
| 70 | 28 | 35 | -18.073 | 0.522 | 
Residual = 0.522 |  | 
CaAcAatgTGA | 
AATTAA |  | ORF01756 ORF03092 Rv0184 Rv0239 Rv0350 Rv0351 Rv0352 Rv0353 Rv0479c Rv0502 Rv0709 Rv0722 Rv0870c Rv1037c Rv1038c Rv1791 Rv1792 Rv1830 Rv2302 Rv2460c Rv2461c Rv2798c Rv2822c Rv3051c Rv3052c Rv3058c Rv3874 Rv3875 | dnaK grpE dnaJ1 hspR rpmC rpmD esxI esxJ PE19 clpP2 clpP nrdE nrdI PROBABLY TETR-FAMILY esxB esxA | hypothetical protein | molecular chaperone DnaK | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) | PROBABLE CHAPERONE PROTEIN DNAJ1 | PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR (MERR FAMILY) | PROBABLE CONSERVED MEMBRANE PROTEIN | 50S ribosomal protein L29 | 50S ribosomal protein L30 | PUTATIVE ESAT-6 LIKE PROTEIN ESXI (ESAT-6 LIKE PROTEIN 1) | ESAT-6 LIKE PROTEIN ESXJ (ESAT-6 LIKE PROTEIN 2) | PE FAMILY PROTEIN | ATP-dependent Clp protease proteolytic subunit | ribonucleotide-diphosphate reductase subunit alpha | ribonucleotide reductase stimulatory protein | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | 10 KDA CULTURE FILTRATE ANTIGEN ESXB (LHP) (CFP10) | 6 KDA EARLY SECRETORY ANTIGENIC TARGET ESXA (ESAT-6) |
| 71 | 35 | 37 | -26.444 | 0.437 | 
Residual = 0.437 |  | 
ACTcCaGtTCtTgGAaaGGATG | 
TCGgcaAaACanaAAncGA |  | ORF01163 ORFD0302 Rv0014c Rv0016c Rv0020c Rv0066c Rv0462 Rv0598c Rv0599c Rv0795 Rv0810c Rv0896 Rv0931c Rv0932c Rv1070c Rv1071c Rv1277 Rv1327c Rv1422 Rv1474c Rv2074 Rv2097c Rv2168c Rv2193 Rv2195 Rv2196 Rv2284 Rv2448c Rv2480c Rv3210c Rv3264c Rv3325 Rv3597c Rv3816c Rv3898c | pknB pbpA TB39.8 icd2 lpd FRAGMENT gltA pknD pstS2 echA8 echA9 glgE ctaE qcrA qcrB lipM valS manB lsr2 | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) | PROBABLE PENICILLIN-BINDING PROTEIN PBPA | hypothetical protein | PROBABLE ISOCITRATE DEHYDROGENASE [NADP] ICD2 (OXALOSUCCINATE DECARBOXYLASE) (IDH) (NADP+-SPECIFIC ICDH) (IDP) | dihydrolipoamide dehydrogenase | PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 (FRAGMENT) | type II citrate synthase | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) | PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS2 (PBP-2) (PSTS2) | enoyl-CoA hydratase | PROBABLE GLUCANASE GLGE | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE TRANSPOSASE | PROBABLE CYTOCHROME C OXIDASE (SUBUNIT III) CTAE | Probable Rieske iron-sulfur protein QcrA | Probable Ubiquinol-cytochrome C reductase QcrB (cytochrome B subunit) | Probable esterase LipM | valyl-tRNA synthetase | POSSIBLE TRANSPOSASE | D-ALPHA-D-MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE MANB (D-ALPHA-D-HEPTOSE-1-PHOSPHATE GUANYLYLTRANSFERASE) | PROBABLE IRON-REGULATED LSR2 PROTEIN PRECURSOR | POSSIBLE ACYLTRANSFERASE |
| 72 | 17 | 36 | -54.395 | 0.311 | 
Residual = 0.311 |  | 
AgTAcAacACgTTtTagTA | 
CAAAgcTgaCAaggGAcAggcAGA |  | ORF05528 Rv0135c Rv0136 Rv0163 Rv0790c Rv0792c Rv0841c Rv1219c Rv1894c Rv1995 Rv2103c Rv2497c Rv2526 Rv3270 Rv3516 Rv3573c Rv3574 | cyp138 PROBABLY GNTR-FAMILY pdhA ctpC echA19 fadE34 PROBABLY TETR-FAMILY | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE CYTOCHROME P450 138 CYP138 | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE PYRUVATE DEHYDROGENASE E1 COMPONENT (ALPHA SUBUNIT) PDHA (PYRUVATE DECARBOXYLASE) (PYRUVATE DEHYDROGENASE) (PYRUVIC DEHYDROGENASE) | PROBABLE METAL CATION-TRANSPORTING P-TYPE ATPASE C CTPC | enoyl-CoA hydratase | PROBABLE ACYL-CoA DEHYDROGENASE FADE34 | TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| 73 | 13 | 34 | -63.759 | 0.242 | 
Residual = 0.242 |  | 
TtttGCaGCtg | 
cTGnTCaA |  | ORF08307 Rv0646c Rv1080c Rv1360 Rv1511 Rv1643 Rv2421c Rv2441c Rv2442c Rv2904c Rv3805c Rv3908 Rv3924c | lipG greA gmdA rplT nadD rpmA rplU rplS rpmH | PROBABLE LIPASE/ESTERASE LIPG | transcription elongation factor GreA | PROBABLE OXIDOREDUCTASE | GDP-D-mannose dehydratase gmdA (GDP-mannose 4,6 dehydratase) (GMD) | 50S ribosomal protein L20 | nicotinic acid mononucleotide adenyltransferase | 50S ribosomal protein L27 | 50S ribosomal protein L21 | 50S ribosomal protein L19 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | hypothetical protein | 50S ribosomal protein L34 |
| 74 | 20 | 37 | -25.014 | 0.417 | 
Residual = 0.417 |  | 
aAGcCTTtCT | 
AATTAT |  | ORF04372 Rv0276 Rv1100 Rv1162 Rv1163 Rv1416 Rv2130c Rv2131c Rv2134c Rv2310 Rv2326c Rv2367c Rv2368c Rv2576c Rv2589 Rv2676c Rv2901c Rv3209 Rv3257c Rv3568c | narH narJ ribH cysS cysQ phoH1 gabT manB bphC | hypothetical protein | PROBABLE RESPIRATORY NITRATE REDUCTASE (BETA CHAIN) NARH | PROBABLE RESPIRATORY NITRATE REDUCTASE (DELTA CHAIN) NARJ | riboflavin synthase subunit beta | cysteinyl-tRNA synthetase | POSSIBLE MONOPHOSPHATASE CYSQ | POSSIBLE EXCISIONASE | POSSIBLE TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSORTER | PROBABLE PHOH-LIKE PROTEIN PHOH1 (PHOSPHATE STARVATION-INDUCIBLE PROTEIN PSIH) | POSSIBLE CONSERVED MEMBRANE PROTEIN | 4-aminobutyrate aminotransferase | CONSERVED HYPOTHETICAL THREONIN AND PROLINE RICH PROTEIN | phosphomannomutase/phosphoglucomutase | PROBABLE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC (23OHBP OXYGENASE) (2,3-DIHYDROXYBIPHENYL DIOXYGENASE) (2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE) (DHBD) |
| 75 | 19 | 35 | -61.004 | 0.360 | 
Residual = 0.360 |  | 
TTaGCTTAGGCtancCTAA | 
GTCGGgActGggTCGGCaG |  | Rv0282 Rv0283 Rv0285 Rv0286 Rv0450c Rv0451c Rv1461 Rv1463 Rv1464 Rv1465 Rv1466 Rv2377c Rv2379c Rv2380c Rv2381c Rv2382c Rv2383c Rv3402c Rv3839 | PE5 PPE4 mmpL4 mmpS4 csd mbtH mbtF mbtE mbtD mbtC mbtB | hypothetical protein | POSSIBLE CONSERVED MEMBRANE PROTEIN | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL4 | PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | PROBABLE CYSTEINE DESULFURASE CSD | POSSIBLE NITROGEN FIXATION RELATED PROTEIN | PUTATIVE CONSERVED PROTEIN MBTH | PEPTIDE SYNTHETASE MBTF (PEPTIDE SYNTHASE) | PEPTIDE SYNTHETASE MBTE (PEPTIDE SYNTHASE) | POLYKETIDE SYNTHETASE MBTD (POLYKETIDE SYNTHASE) | POLYKETIDE SYNTHETASE MBTC (POLYKETIDE SYNTHASE) | PHENYLOXAZOLINE SYNTHASE MBTB (PHENYLOXAZOLINE SYNTHETASE) |
| 76 | 13 | 38 | -58.892 | 0.280 | 
Residual = 0.280 |  | 
AGgAAGAgaAa | 
AAAATT |  | Rv0667 Rv0668 Rv1643 Rv2888c Rv2889c Rv2890c Rv3456c Rv3457c Rv3458c Rv3459c Rv3460c Rv3461c Rv3462c | rpoB rpoC rplT amiC tsf rpsB rplQ rpoA rpsD rpsK rpsM rpmJ infA | DNA-directed RNA polymerase subunit beta | DNA-directed RNA polymerase subunit beta' | 50S ribosomal protein L20 | amidase | elongation factor Ts | 30S ribosomal protein S2 | 50S ribosomal protein L17 | DNA-directed RNA polymerase subunit alpha | 30S ribosomal protein S4 | 30S ribosomal protein S11 | 30S ribosomal protein S13 | 50S ribosomal protein L36 | translation initiation factor IF-1 |
| 77 | 13 | 37 | -69.485 | 0.226 | 
Residual = 0.226 |  | 
AAcATCAATC | 
AAGGATGGcCATtT |  | ORF03108 ORF05284 Rv0466 Rv0643c Rv0651 Rv0652 Rv0714 Rv0715 Rv2904c Rv2907c Rv2908c Rv2909c Rv3363c | mmaA3 rplJ rplL rplN rplX rplS rimM rpsP | hypothetical protein | METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) | 50S ribosomal protein L10 | 50S ribosomal protein L7/L12 | 50S ribosomal protein L14 | 50S ribosomal protein L24 | 50S ribosomal protein L19 | 16S rRNA-processing protein | 30S ribosomal protein S16 |
| 78 | 22 | 38 | -36.426 | 0.395 | 
Residual = 0.395 |  | 
GtcACantnGTCaCaCcAGTCACA | 
TaTGAAATT |  | Rv0040c Rv0129c Rv0883c Rv0994 Rv1157c Rv1158c Rv1566c Rv1697 Rv1698 Rv2145c Rv2147c Rv2150c Rv2525c Rv2927c Rv3005c Rv3258c Rv3310 Rv3330 Rv3414c Rv3587c Rv3810 Rv3812 | mtc28 fbpC moeA1 wag31 ftsZ ACID PHOSPHOMONOESTERASE dacB1 sigD pirG PE_PGRS62 | SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) | hypothetical protein | PROBABLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA1 | CONSERVED HYPOTHETICAL ALA-, PRO-RICH PROTEIN | Possible inv protein | CONSERVED HYPOTHETICAL PROTEIN WAG31 | cell division protein FtsZ | POSSIBLE ACID PHOSPHATASE (ACID PHOSPHOMONOESTERASE) (PHOSPHOMONOESTERASE) (GLYCEROPHOSPHATASE) | PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE) | RNA polymerase sigma factor SigD | PROBABLE CONSERVED MEMBRANE PROTEIN | EXPORTED REPETITIVE PROTEIN PRECURSOR PIRG (CELL SURFACE PROTEIN) (EXP53) | PE-PGRS FAMILY PROTEIN |
| 79 | 12 | 35 | -68.178 | 0.254 | 
Residual = 0.254 |  | 
gTCGtGtttGTGa | 
GgtCAGngTC |  | Rv1282c Rv1613 Rv1614 Rv1689 Rv1860 Rv2564 Rv2948c Rv3791 Rv3794 Rv3795 Rv3920c Rv3921c | oppC trpA lgt tyrS apa glnQ fadD22 embA embB | PROBABLE OLIGOPEPTIDE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER OPPC | tryptophan synthase subunit alpha | prolipoprotein diacylglyceryl transferase | tyrosyl-tRNA synthetase | ALANINE AND PROLINE RICH SECRETED PROTEIN APA (FIBRONECTIN ATTACHMENT PROTEIN) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (45/47 kDa antigen) | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER GLNQ | acyl-CoA synthetase | short chain dehydrogenase | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBA (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBB (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) | HYPOTHETICAL PROTEIN SIMILAR TO JAG PROTEIN | putative inner membrane protein translocase component YidC |
| 80 | 19 | 38 | -37.902 | 0.343 | 
Residual = 0.343 |  | 
CGcGATCa | 
TGTCGTGGtTGGGtta |  | ORF01330 Rv0696 Rv1098c Rv1232c Rv1728c Rv2061c Rv2080 Rv2082 Rv2102 Rv2228c Rv2418c Rv3215 Rv3262 Rv3305c Rv3495c Rv3496c Rv3498c Rv3499c Rv3671c | fumC lppJ entC fbiB amiA1 lprN mce4D mce4B mce4A | PROBABLE MEMBRANE SUGAR TRANSFERASE | fumarate hydratase | hypothetical protein | Possible lipoprotein lppJ | isochorismate synthase | F420-0--gamma-glutamyl ligase | POSSIBLE N-ACYL-L-AMINO ACID AMIDOHYDROLASE AMIA1 (N-ACYL-L-AMINO ACID AMINOHYDROLASE) | POSSIBLE MCE-FAMILY LIPOPROTEIN LPRN (MCE-FAMILY LIPOPROTEIN MCE4E) | MCE-FAMILY PROTEIN MCE4D | MCE-FAMILY PROTEIN MCE4B | MCE-FAMILY PROTEIN MCE4A | POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE |
| 81 | 15 | 37 | -48.124 | 0.335 | 
Residual = 0.335 |  | 
TGATCGAGG | 
ACAAACCGtcGTA |  | Rv1304 Rv1305 Rv1306 Rv1307 Rv1311 Rv1312 Rv1437 Rv1438 Rv1677 Rv2195 Rv2196 Rv2228c Rv3043c Rv3281 Rv3284 | atpB atpE atpF atpH atpC pgk tpiA dsbF qcrA qcrB ctaD | F0F1 ATP synthase subunit A | F0F1 ATP synthase subunit C | F0F1 ATP synthase subunit B | PROBABLE ATP SYNTHASE DELTA CHAIN ATPH | F0F1 ATP synthase subunit epsilon | CONSERVED HYPOTHETICAL SECRETED PROTEIN | phosphoglycerate kinase | triosephosphate isomerase | PROBABLE CONSERVED LIPOPROTEIN DSBF | Probable Rieske iron-sulfur protein QcrA | Probable Ubiquinol-cytochrome C reductase QcrB (cytochrome B subunit) | hypothetical protein | PROBABLE CYTOCHROME C OXIDASE POLYPEPTIDE I CTAD (CYTOCHROME AA3 SUBUNIT 1) |
| 82 | 26 | 38 | -30.927 | 0.458 | 
Residual = 0.458 |  | 
GAGGTgnCngnnntCGTTTGTGAT | 
ACnACAacAcgTtnCACtTTt |  | ORF02159 ORF03593 Rv0279c Rv0742 Rv0750 Rv0834c Rv1091 Rv1243c Rv1397c Rv1398c Rv1628c Rv1993c Rv2008c Rv2161c Rv2162c Rv2165c Rv2166c Rv2256c Rv2634c Rv2657c Rv2841c Rv3053c Rv3507 Rv3526 Rv3527 Rv3595c | PE_PGRS4 PE_PGRS8 PE_PGRS14 PE_PGRS22 PE_PGRS23 PE_PGRS38 mraW PE_PGRS46 nusA nrdH PE_PGRS53 PE_PGRS59 | PE-PGRS FAMILY PROTEIN | hypothetical protein | S-adenosyl-methyltransferase MraW | PROBABLE phiRv2 PROPHAGE PROTEIN | transcription elongation factor NusA | PROBABLE GLUTAREDOXIN ELECTRON TRANSPORT COMPONENT OF NRDEF (GLUTAREDOXIN-LIKE PROTEIN) NRDH | POSSIBLE OXIDOREDUCTASE |
| 83 | 14 | 34 | -50.722 | 0.306 | 
Residual = 0.306 |  | 
CGtcCtTGACG | 
CTGAtCTggGttcAGATag |  | ORFD0354 Rv0073 Rv0759c Rv1018c Rv1078 Rv1242 Rv2046 Rv2080 Rv2289 Rv2427c Rv2582 Rv3438 Rv3477 Rv3478 | glmU pra lppI lppJ cdh proA ppiB PE31 PPE60 | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER | hypothetical protein | Probable UDP-N-acetylglucosamine pyrophosphorylase glmU | Probable Proline-rich antigen homolog pra | Probable lipoprotein lppI | Possible lipoprotein lppJ | CDP-diacylglycerol pyrophosphatase | gamma-glutamyl phosphate reductase | PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PPIB (CYCLOPHILIN) (PPIASE) (ROTAMASE) (PEPTIDYLPROLYL ISOMERASE) | PE FAMILY PROTEIN |
| 84 | 25 | 35 | -34.796 | 0.426 | 
Residual = 0.426 |  | 
ccaaanTcgaaCAngttaCAgatt | 
TcTTgaTcTA |  | Rv0251c Rv0384c Rv0441c Rv0726c Rv1627c Rv1628c Rv2111c Rv2526 Rv2527 Rv2618 Rv2641 Rv2710 Rv2711 Rv2920c Rv3052c Rv3053c Rv3064c Rv3070 Rv3173c Rv3223c Rv3504 Rv3526 Rv3527 Rv3570c Rv3857c | hsp clpB cadI sigB ideR amt nrdI nrdH ccrB PROBABLY TETR/ACRR-FAMILY sigH fadE26 | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) | PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) | hypothetical protein | lipid-transfer protein | CADMIUM INDUCIBLE PROTEIN CADI | RNA polymerase sigma factor SigB | IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER | PROBABLE AMMONIUM-TRANSPORT INTEGRAL MEMBRANE PROTEIN AMT | ribonucleotide reductase stimulatory protein | PROBABLE GLUTAREDOXIN ELECTRON TRANSPORT COMPONENT OF NRDEF (GLUTAREDOXIN-LIKE PROTEIN) NRDH | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | camphor resistance protein CrcB | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) | RNA polymerase sigma factor RpoE | PROBABLE ACYL-CoA DEHYDROGENASE FADE26 | POSSIBLE OXIDOREDUCTASE | POSSIBLE MEMBRANE PROTEIN |
| 85 | 10 | 37 | -84.956 | 0.251 | 
Residual = 0.251 |  | 
ACAAgCGATTCCGCGcGcTTC | 
GTCGcgGcGGcGcgGctgGA |  | Rv0342 Rv0754 Rv1576c Rv1577c Rv1585c Rv1586c Rv2650c Rv2651c Rv2658c Rv2659c | iniA PE_PGRS11 | ISONIAZID INDUCTIBLE GENE PROTEIN INIA | PE-PGRS FAMILY PROTEIN | Probable phiRV1 phage protein | Probable phiRv1 phage protein | Possible phage phiRv1 protein | Probable phiRv1 integrase | POSSIBLE phiRv2 PROPHAGE PROTEIN | POSSIBLE phiRv2 PROPHAGE PROTEASE | POSSIBLE PROPHAGE PROTEIN | PROBABLE phiRv2 PROPHAGE INTEGRASE |
| 86 | 36 | 37 | -39.529 | 0.340 | 
Residual = 0.340 |  | 
TGtAtCTaAAaTcTaTcCATtT | 
cGgCGGCGntCAaCT |  | ORF01176 ORF07003 Rv0094c Rv0240 Rv0268c Rv0495c Rv0559c Rv0560c Rv0610c Rv0830 Rv0951 Rv1327c Rv1388 Rv1389 Rv1474c Rv1584c Rv1585c Rv1586c Rv1685c Rv1686c Rv1687c Rv2010 Rv2465c Rv2466c Rv2650c Rv2651c Rv2744c Rv2745c Rv2858c Rv3051c Rv3054c Rv3058c Rv3206c Rv3463 Rv3488 Rv3898c | METHYLASE sucC glgE mihF gmk 35kd_ag aldC nrdE PROBABLY TETR-FAMILY moeB1 | hypothetical protein | POSSIBLE CONSERVED SECRETED PROTEIN | POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) | succinyl-CoA synthetase subunit beta | PROBABLE GLUCANASE GLGE | PUTATIVE INTEGRATION HOST FACTOR MIHF | guanylate kinase | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | Possible phiRv1 phage protein | Possible phage phiRv1 protein | Probable phiRv1 integrase | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | ribose-5-phosphate isomerase B | POSSIBLE phiRv2 PROPHAGE PROTEIN | POSSIBLE phiRv2 PROPHAGE PROTEASE | CONSERVED 35 KDA ALANINE RICH PROTEIN | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE ALDEHYDE DEHYDROGENASE ALDC | ribonucleotide-diphosphate reductase subunit alpha | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | molybdopterin biosynthesis-like protein MoeZ |
| 87 | 15 | 36 | -52.719 | 0.325 | 
Residual = 0.325 |  | 
GACcACTAgggannACt | 
ttaAgaCcaGcCgTtcCCGtCcT |  | Rv0006 Rv0931c Rv1422 Rv1448c Rv1449c Rv1676 Rv1700 Rv2109c Rv2207 Rv2475c Rv2476c Rv2553c Rv2790c Rv2791c Rv3813c | gyrA pknD tal tkt prcA cobT gdh ltp1 | DNA gyrase subunit A | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) | hypothetical protein | transaldolase | transketolase | proteasome (alpha subunit) PrcA | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | PROBABLE NAD-DEPENDENT GLUTAMATE DEHYDROGENASE GDH (NAD-GDH) (NAD-DEPENDENT GLUTAMIC DEHYDROGENASE) | PROBABLE CONSERVED MEMBRANE PROTEIN | lipid-transfer protein | PROBABLE TRANSPOSASE |
| 88 | 22 | 37 | -37.892 | 0.377 | 
Residual = 0.377 |  | 
AAAATcTgTtA | 
cCAcCnACAAcACa |  | Rv0198c Rv0404 Rv0464c Rv0734 Rv1200 Rv1275 Rv1502 Rv2082 Rv2135c Rv2243 Rv2244 Rv2246 Rv2247 Rv2524c Rv2846c Rv3248c Rv3262 Rv3285 Rv3295 Rv3671c Rv3799c Rv3800c | fadD30 mapA lprC fabD acpP kasB accD6 fas efpA sahH fbiB accA3 PROBABLY TETR-FAMILY accD4 pks13 | PROBABLE ZINC METALLOPROTEASE | acyl-CoA synthetase | hypothetical protein | methionine aminopeptidase | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN | POSSIBLE LIPOPROTEIN LPRC | acyl-carrier-protein S-malonyltransferase | acyl carrier protein | 3-oxoacyl-(acyl carrier protein) synthase II | ACETYL/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD6 | PROBABLE FATTY ACID SYNTHASE FAS (FATTY ACID SYNTHETASE) | POSSIBLE INTEGRAL MEMBRANE EFFLUX PROTEIN EFPA | S-adenosyl-L-homocysteine hydrolase | F420-0--gamma-glutamyl ligase | PROBABLE BIFUNCTIONAL PROTEIN ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE (ALPHA CHAIN) ACCA3: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE | PROBABLE PROPIONYL-CoA CARBOXYLASE BETA CHAIN 4 ACCD4 (PCCASE) (PROPANOYL-COA:CARBON DIOXIDE LIGASE) | POLYKETIDE SYNTHASE PKS13 |
| 89 | 14 | 36 | -52.206 | 0.300 | 
Residual = 0.300 |  | 
ATCtagACCGtGgTg | 
tGTtGaTCaCC |  | Rv0009 Rv0567 Rv0706 Rv0723 Rv0732 Rv0761c Rv2271 Rv2272 Rv2275 Rv2276 Rv2582 Rv2993c Rv3598c Rv3747 | ppiA rplV rplO secY adhB cyp121 ppiB HHDD ISOMERASE lysS | PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) | PROBABLE METHYLTRANSFERASE/METHYLASE | 50S ribosomal protein L22 | 50S ribosomal protein L15 | preprotein translocase subunit SecY | POSSIBLE ZINC-CONTAINING ALCOHOL DEHYDROGENASE NAD DEPENDENT ADHB | hypothetical protein | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | CYTOCHROME P450 121 CYP121 | PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PPIB (CYCLOPHILIN) (PPIASE) (ROTAMASE) (PEPTIDYLPROLYL ISOMERASE) | POSSIBLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD ISOMERASE) | lysyl-tRNA synthetase |
| 90 | 18 | 37 | -48.510 | 0.351 | 
Residual = 0.351 |  | 
GtCACatTcGcCACaCcAgtCACA | 
gTcACCaacTCGGcACaaA |  | Rv1157c Rv1158c Rv1566c Rv1698 Rv2147c Rv2150c Rv2151c Rv2152c Rv2154c Rv2155c Rv2350c Rv2927c Rv3005c Rv3209 Rv3246c Rv3330 Rv3587c Rv3717 | ftsZ ftsQ murC ftsW murD plcB mtrA dacB1 | CONSERVED HYPOTHETICAL ALA-, PRO-RICH PROTEIN | Possible inv protein | hypothetical protein | cell division protein FtsZ | POSSIBLE CELL DIVISION PROTEIN FTSQ | UDP-N-acetylmuramate--L-alanine ligase | FtsW-like protein FtsW | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase | PROBABLE MEMBRANE-ASSOCIATED PHOSPHOLIPASE C 2 PLCB | CONSERVED HYPOTHETICAL THREONIN AND PROLINE RICH PROTEIN | TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY PROTEIN MTRA | PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE) | PROBABLE CONSERVED MEMBRANE PROTEIN |
| 91 | 41 | 38 | -21.992 | 0.458 | 
Residual = 0.458 |  | 
CTATGgACAACAA | 
taGTtancacAggCTgACctaaa |  | ORF01217 ORF05164 ORFD0179 ORFD0228 Rv0534c Rv0669c Rv0749 Rv0848 Rv0885 Rv1100 Rv1540 Rv1773c Rv1807 Rv1967 Rv2016 Rv2134c Rv2152c Rv2358 Rv2369c Rv2381c Rv2382c Rv2386c Rv2465c Rv2507 Rv2619c Rv2625c Rv2674 Rv2677c Rv2678c Rv2694c Rv2745c Rv2849c Rv2987c Rv3085 Rv3230c Rv3338 Rv3423c Rv3561 Rv3569c Rv3681c Rv3839 | menA cysK2 PPE31 mce3B murC PROBABLY ARSR-FAMILY mbtD mbtC mbtI hemY hemE cobO leuD alr fadD3 bphD whiB4 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | POSSIBLE HYDROLASE | hypothetical protein | POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) | CONSERVED HYPOTHETICAL PROTEIN MEMBER OF yabO/yceC/yfiI FAMILY | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PPE FAMILY PROTEIN | MCE-FAMILY PROTEIN MCE3B | UDP-N-acetylmuramate--L-alanine ligase | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) | POLYKETIDE SYNTHETASE MBTD (POLYKETIDE SYNTHASE) | POLYKETIDE SYNTHETASE MBTC (POLYKETIDE SYNTHASE) | salicylate synthase MbtI | ribose-5-phosphate isomerase B | POSSIBLE CONSERVED PROLINE RICH MEMBRANE PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN | protoporphyrinogen oxidase | uroporphyrinogen decarboxylase | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | cob(I)yrinic acid a,c-diamide adenosyltransferase | isopropylmalate isomerase small subunit | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE | HYPOTHETICAL OXIDOREDUCTASE | alanine racemase | acyl-CoA synthetase | 2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE BPHD | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB4 |
| 92 | 23 | 37 | -46.174 | 0.314 | 
Residual = 0.314 |  | 
CatCGgCaTg | 
GATTGAgcTtC |  | ORFD0310.1 Rv0626 Rv0643c Rv0714 Rv0715 Rv1386 Rv1387 Rv1408 Rv1591 Rv1597 Rv1870c Rv1887 Rv2144c Rv2585c Rv2785c Rv2904c Rv2907c Rv2909c Rv2951c Rv3025c Rv3726 Rv3908 Rv3924c | mmaA3 rplN rplX PE15 PPE20 rpe rpsO rplS rimM rpsP iscS rpmH | hypothetical protein | METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) | 50S ribosomal protein L14 | 50S ribosomal protein L24 | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | ribulose-phosphate 3-epimerase | PROBABLE TRANSMEMBRANE PROTEIN | Probable transmembrane protein | POSSIBLE CONSERVED LIPOPROTEIN | 30S ribosomal protein S15 | 50S ribosomal protein L19 | 16S rRNA-processing protein | 30S ribosomal protein S16 | POSSIBLE OXIDOREDUCTASE | PROBABLE CYSTEINE DESULFURASE ISCS (NIFS PROTEIN HOMOLOG) (NITROGENASE METALLOCLUSTERS BIOSYNTHESIS PROTEIN NIFS) | POSSIBLE DEHYDROGENASE | 50S ribosomal protein L34 |
| 93 | 16 | 39 | -40.558 | 0.353 | 
Residual = 0.353 |  | 
AtACAtcAGA | 
ACggCGACTgCGA |  | ORF00615 Rv1185c Rv1223 Rv1275 Rv1410c Rv1411c Rv1543 Rv1945 Rv2345 Rv2586c Rv2941 Rv2942 Rv3284 Rv3588c Rv3699 Rv3815c | fadD21 htrA lprC lprG secF fadD28 mmpL7 CARBONATE DEHYDRATASE | acyl-CoA synthetase | PROBABLE SERINE PROTEASE HTRA (DEGP PROTEIN) | POSSIBLE LIPOPROTEIN LPRC | AMINOGLYCOSIDES/TETRACYCLINE-TRANSPORT INTEGRAL MEMBRANE PROTEIN | PROBABLE CONSERVED LIPOPROTEIN LPRG | POSSIBLE FATTY ACYL-CoA REDUCTASE | hypothetical protein | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | preprotein translocase subunit SecF | CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL7 | CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE) (CARBONIC DEHYDRATASE) | POSSIBLE ACYLTRANSFERASE |
| 94 | 15 | 36 | -61.382 | 0.286 | 
Residual = 0.286 |  | 
CagAcCgCgcaaCGAtCGCTGCTA | 
TtCACCgAagGCCtGCAGGC |  | Rv0423c Rv1184c Rv1216c Rv1218c Rv1224 Rv1248c Rv1275 Rv1843c Rv2483c Rv2507 Rv3193c Rv3588c Rv3719 Rv3865 Rv3868 | thiC tatB kgd lprC guaB1 plsC CARBONATE DEHYDRATASE | thiamine biosynthesis protein ThiC | POSSIBLE EXPORTED PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | PROBABLE TETRONASIN-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER | sec-independent translocase | alpha-ketoglutarate decarboxylase | POSSIBLE LIPOPROTEIN LPRC | inositol-5-monophosphate dehydrogenase | POSSIBLE TRANSMEMBRANE PHOSPHOLIPID BIOSYNTHESIS BIFUNCTIONNAL ENZYME PLSC: PUTATIVE L-3-PHOSPHOSERINE PHOSPHATASE (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSP) (PSPASE) + 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE (1-AGP ACYLTRANSFERASE) (1-AGPAT) (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE) (LPAAT) | POSSIBLE CONSERVED PROLINE RICH MEMBRANE PROTEIN | hypothetical protein | CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE) (CARBONIC DEHYDRATASE) |
| 95 | 25 | 39 | -31.487 | 0.441 | 
Residual = 0.441 |  | 
tTGGTaAcTtAcgAA | 
atCaCGAttCGAccGcnAcCGcG |  | ORF04687 Rv0654 Rv0748 Rv0805 Rv1284 Rv1290c Rv1486c Rv1869c Rv1891 Rv1892 Rv1893 Rv1904 Rv1926c Rv2161c Rv2182c Rv2295 Rv2520c Rv2595 Rv2596 Rv2606c Rv2607 Rv2729c Rv3033 Rv3230c Rv3651 | mpt63 pdxH | PROBABLE DIOXYGENASE | hypothetical protein | Probable reductase | PROBABLE MEMBRANE PROTEIN | IMMUNOGENIC PROTEIN MPT63 (ANTIGEN MPT63/MPB63) (16 kDa IMMUNOPROTECTIVE EXTRACELLULAR PROTEIN) | 1-acylglycerol-3-phosphate O-acyltransferase | POSSIBLE CONSERVED MEMBRANE PROTEIN | pyridoxine biosynthesis protein | pyridoxamine 5'-phosphate oxidase | PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE VALINE AND LEUCINE RICH PROTEIN | HYPOTHETICAL OXIDOREDUCTASE |
| 96 | 13 | 35 | -62.590 | 0.199 | 
Residual = 0.199 |  | 
AtATtTTCAA | 
AAAAAG |  | ORFD0315 Rv0367c Rv1685c Rv1686c Rv1687c Rv2440c Rv2465c Rv2466c Rv2677c Rv2913c Rv3189 Rv3340 Rv3463 | obgE hemY D-AMINO ACID HYDROLASE metC | hypothetical protein | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | GTPase ObgE | ribose-5-phosphate isomerase B | protoporphyrinogen oxidase | POSSIBLE D-AMINO ACID AMINOHYDROLASE (D-AMINO ACID HYDROLASE) | O-acetylhomoserine aminocarboxypropyltransferase |
| 97 | 19 | 37 | -38.246 | 0.397 | 
Residual = 0.397 |  | 
ACGAtgcAGAGcgAAGCgAtG | 
atCGcttcGcTCaGCAaCGT |  | Rv0460 Rv0533c Rv0685 Rv0890c Rv0933 Rv0935 Rv1175c Rv1611 Rv1614 Rv2048c Rv2066 Rv2258c Rv2259 Rv2571c Rv2882c Rv3031 Rv3291c Rv3793 Rv3823c | fabH tuf PROBABLY LUXR-FAMILY pstB pstC1 fadH trpC lgt pks12 cobI adhE2 frr PROBABLY ASNC-FAMILY embC mmpL8 | CONSERVED HYDROPHOBIC PROTEIN | 3-oxoacyl-(acyl carrier protein) synthase III | elongation factor Tu | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) | PHOSPHATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER PSTB | PHOSPHATE-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER PSTC1 | PROBABLE NADPH DEPENDENT 2,4-DIENOYL-COA REDUCTASE FADH (2,4-dienoyl coenzyme A reductase) (4-enoyl-CoA reductase) | indole-3-glycerol-phosphate synthase | prolipoprotein diacylglyceryl transferase | Probable polyketide synthase pks12 | Probable bifunctional protein, CobI-CobJ fusion protein: S-adenosyl-L-methionine-precorrin-2 methyl transferase + precorrin-3 methylase | Possible transcriptional regulatory protein | Probable zinc-dependent alcohol dehydrogenase AdhE2 | PROBABLE TRANSMEMBRANE ALANINE AND VALINE AND LEUCINE RICH PROTEIN | ribosome recycling factor | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBC (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN MMPL8 |
| 98 | 25 | 37 | -41.686 | 0.384 | 
Residual = 0.384 |  | 
cGATTgCagAgatcgGngAaa | 
AAGgTCACgCCGGTCTgGTGACGC |  | ORF07004 ORFD0070 Rv0140 Rv0384c Rv0560c Rv0676c Rv0677c Rv0678 Rv0747 Rv0841c Rv0859 Rv1460 Rv1465 Rv1907c Rv1908c Rv1909c Rv1993c Rv3054c Rv3206c Rv3222c Rv3223c Rv3269 Rv3270 Rv3507 Rv3516 | clpB METHYLASE mmpL5 mmpS5 PE_PGRS10 fadA katG furA moeB1 sigH ctpC PE_PGRS53 echA19 | hypothetical protein | PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) | POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL5 | POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 | PE-PGRS FAMILY PROTEIN | acetyl-CoA acetyltransferase | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE NITROGEN FIXATION RELATED PROTEIN | CATALASE-PEROXIDASE-PEROXYNITRITASE T KATG | FERRIC UPTAKE REGULATION PROTEIN FURA (FUR) | molybdopterin biosynthesis-like protein MoeZ | RNA polymerase sigma factor RpoE | PROBABLE METAL CATION-TRANSPORTING P-TYPE ATPASE C CTPC | enoyl-CoA hydratase |
| 99 | 21 | 36 | -23.422 | 0.461 | 
Residual = 0.461 |  | 
ATACCgatTTg | 
TTGTCAAcGaTGTGA |  | ORF03049 Rv0041 Rv0206c Rv0287 Rv0288 Rv0734 Rv0755c Rv1098c Rv1135c Rv1155 Rv1201c Rv1208 Rv1484 Rv2061c Rv2101 Rv2219 Rv3210c Rv3464 Rv3682 Rv3910 Rv3915 | leuS mmpL3 esxG esxH mapA PPE12 fumC PPE16 inhA helZ rmlB ponA2 | leucyl-tRNA synthetase | POSSIBLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL3 | ESAT-6 LIKE PROTEIN ESXG (CONSERVED HYPOTHETICAL PROTEIN TB9.8) | LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) | methionine aminopeptidase | PPE FAMILY PROTEIN | fumarate hydratase | hypothetical protein | PROBABLE TRANSFERASE | enoyl-(acyl carrier protein) reductase | PROBABLE HELICASE HELZ | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | dTDP-GLUCOSE 4,6-DEHYDRATASE RMLB | PROBABLE BIFUNCTIONAL MEMBRANE-ASSOCIATED PENICILLIN-BINDING PROTEIN 1A/1B PONA2 | PROBABLE HYDROLASE |
| 100 | 25 | 34 | -48.301 | 0.325 | 
Residual = 0.325 |  | 
aGGGnCgaagGTCCCcaa | 
GCtcgnGACagAAGTCCCCta |  | ORF05167 ORFD0322 Rv0039c Rv0079 Rv0080 Rv0280 Rv0569 Rv0990c Rv1733c Rv1813c Rv1996 Rv2007c Rv2030c Rv2031c Rv2032 Rv2058c Rv2253 Rv2623 Rv2626c Rv2627c Rv2628 Rv3134c Rv3341 Rv3342 Rv3463 | PPE3 fdxA hspX acg rpmB TB31.7 metX METHYLASE | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | hypothetical protein | PPE FAMILY PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE FERREDOXIN FDXA | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) | Conserved hypothetical protein Acg | 50S ribosomal protein L28 | Possible secreted unknown protein | homoserine O-acetyltransferase | POSSIBLE METHYLTRANSFERASE (METHYLASE) |
| 101 | 19 | 38 | -35.904 | 0.374 | 
Residual = 0.374 |  | 
TtGGTgAC | 
aaCAaATCaGtAcT |  | ORF02734 ORF05723 Rv0257c Rv0873 Rv1543 Rv1608c Rv2588c Rv2716 Rv3219 Rv3240c Rv3248c Rv3363c Rv3600c Rv3601c Rv3602c Rv3673c Rv3715c Rv3716c Rv3924c | fadE10 bcpB yajC whiB1 secA1 sahH panD panC THIOL-DISULFIDE INTERCHANGE RELATED PROTEIN recR rpmH | PROBABLE ACYL-CoA DEHYDROGENASE FADE10 | POSSIBLE FATTY ACYL-CoA REDUCTASE | Probable peroxidoxin BcpB | preprotein translocase subunit YajC | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB1 | preprotein translocase subunit SecA | S-adenosyl-L-homocysteine hydrolase | pantothenate kinase | aspartate alpha-decarboxylase | pantoate--beta-alanine ligase | POSSIBLE MEMBRANE-ANCHORED THIOREDOXIN-LIKE PROTEIN (THIOL-DISULFIDE INTERCHANGE RELATED PROTEIN) | recombination protein RecR | 50S ribosomal protein L34 |
| 102 | 22 | 37 | -33.869 | 0.417 | 
Residual = 0.417 |  | 
GcAgATCGaca | 
ACnTgnTGnCgnacnGnaA |  | ORFD0052 ORFD0126 Rv0057 Rv0506 Rv0692 Rv0693 Rv0694 Rv0759c Rv0888 Rv0926c Rv1206 Rv1360 Rv2140c Rv2357c Rv2435c Rv2561 Rv2716 Rv3029c Rv3232c Rv3234c Rv3600c Rv3601c | mmpS2 pqqE lldD1 fadD6 TB18.6 glyS ADENYLYL-OR GUANYLYL- fixA pvdS panD | hypothetical protein | PROBABLE CONSERVED MEMBRANE PROTEIN MMPS2 | PROBABLE COENZYME PQQ SYNTHESIS PROTEIN E PQQE (COENZYME PQQ SYNTHESIS PROTEIN III) | POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD1 | PROBABLE EXPORTED PROTEIN | acyl-CoA synthetase | PROBABLE OXIDOREDUCTASE | glycyl-tRNA synthetase | PROBABLE CYCLASE (ADENYLYL-OR GUANYLYL-)(ADENYLATE-OR GUANYLATE-) | PROBABLE ELECTRON TRANSFER FLAVOPROTEIN (BETA-SUBUNIT) FIXA (BETA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN SMALL SUBUNIT) (ETFSS) | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN PVDS (PROBABLE RNA POLYMERASE SIGMA FACTOR) | pantothenate kinase | aspartate alpha-decarboxylase |
| 103 | 22 | 38 | -37.804 | 0.370 | 
Residual = 0.370 |  | 
TaATTTgTcaagCATA | 
CaTCGTgaact |  | ORF01392.2 ORFD0400 Rv0750 Rv0834c Rv1404 Rv1989c Rv1990c Rv1994c Rv2034 Rv2035 Rv2159c Rv2237 Rv2342 Rv2557 Rv2777c Rv2780 Rv2829c Rv2853 Rv3287c Rv3290c Rv3814c Rv3917c | PE_PGRS14 ald PE_PGRS48 rsbW lat parB | hypothetical protein | PE-PGRS FAMILY PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | Probable ArsR-type repressor protein | SECRETED L-ALANINE DEHYDROGENASE ALD (40 KDA ANTIGEN) (TB43) | ANTI-SIGMA FACTOR RSBW (SIGMA NEGATIVE EFFECTOR) | L-lysine aminotransferase | POSSIBLE ACYLTRANSFERASE | PROBABLE CHROMOSOME PARTITIONING PROTEIN PARB |
| 104 | 39 | 38 | -20.514 | 0.516 | 
Residual = 0.516 |  | 
AccTCAACGaC | 
TtcACATCAC |  | ORF00110 ORF03093 ORF05589 ORFD0024 Rv0043c Rv0044c Rv0060 Rv0129c Rv0184 Rv0250c Rv0465c Rv0559c Rv0660c Rv0664 Rv0729 Rv1056 Rv1352 Rv1685c Rv1686c Rv1687c Rv1842c Rv2024c Rv2137c Rv2242 Rv2284 Rv2377c Rv2619c Rv2677c Rv2697c Rv2700 Rv2794c Rv2963 Rv3049c Rv3206c Rv3222c Rv3463 Rv3675 Rv3774 Rv3839 | PROBABLY GNTR-FAMILY fbpC xylB lipM mbtH hemY dut moeB1 echA21 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) | POSSIBLE OXIDOREDUCTASE | hypothetical protein | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | POSSIBLE CONSERVED SECRETED PROTEIN | POSSIBLE D-XYLULOSE KINASE XYLB (XYLULOKINASE) (XYLULOSE KINASE) | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | Probable esterase LipM | PUTATIVE CONSERVED PROTEIN MBTH | protoporphyrinogen oxidase | deoxyuridine 5'-triphosphate nucleotidohydrolase | POSSIBLE CONSERVED SECRETED ALANINE RICH PROTEIN | PROBABLE INTEGRAL MEMBRANE PROTEIN | PROBABLE MONOOXYGENASE | molybdopterin biosynthesis-like protein MoeZ | POSSIBLE MEMBRANE PROTEIN | enoyl-CoA hydratase |
| 105 | 8 | 36 | -62.524 | 0.273 | 
Residual = 0.273 |  | 
AAGTTgAa | 
AgtCGGCAGAtggtG |  | Rv0433 Rv0707 Rv2120c Rv2911 Rv2953 Rv3794 Rv3795 Rv3922c | rpsC dacB2 embA embB | hypothetical protein | 30S ribosomal protein S3 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2 (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE) | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBA (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBB (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) |
| 106 | 33 | 36 | -21.391 | 0.490 | 
Residual = 0.490 |  | 
AGGATTTT | 
GACAACTnCAA |  | ORF00122 ORF06111 Rv0043c Rv0094c Rv0421c Rv0462 Rv0490 Rv0491 Rv0509 Rv0724 Rv0821c Rv1410c Rv1411c Rv1565c Rv1916 Rv1945 Rv2091c Rv2124c Rv2194 Rv2195 Rv2229c Rv2345 Rv2405 Rv2586c Rv2587c Rv2868c Rv2941 Rv3103c Rv3624c Rv3719 Rv3720 Rv3835 Rv3836 | PROBABLY GNTR-FAMILY lpd senX3 regX3 hemA sppA phoY2 lprG aceAb metH qcrC qcrA secF secD ispG fadD28 hpt | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) | hypothetical protein | dihydrolipoamide dehydrogenase | PUTATIVE TWO COMPONENT SENSOR HISTIDINE KINASE SENX3 | TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) | glutamyl-tRNA reductase | POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) | PROBABLE PHOSPHATE-TRANSPORT SYSTEM TRANSCRIPTIONAL REGULATORY PROTEIN PHOY2 | AMINOGLYCOSIDES/TETRACYCLINE-TRANSPORT INTEGRAL MEMBRANE PROTEIN | PROBABLE CONSERVED LIPOPROTEIN LPRG | isocitrate lyase | Probable membrane protein | Probable 5-methyltetrahydrofolate--homocystein methyltransferase MetH (Methionine synthase, vitamin-B12 dependent isozyme) (MS) | Probable Ubiquinol-cytochrome C reductase QcrC(cytochrome C subunit) | Probable Rieske iron-sulfur protein QcrA | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | preprotein translocase subunit SecF | preprotein translocase subunit SecD | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | acyl-CoA synthetase | HYPOTHETICAL PROLINE-RICH PROTEIN | hypoxanthine-guanine phosphoribosyltransferase | POSSIBLE FATTY ACID SYNTHASE | PROBABLE CONSERVED MEMBRANE PROTEIN |
| 107 | 22 | 37 | -36.365 | 0.385 | 
Residual = 0.385 |  | 
CAacccGAACCGcGtntggGcac | 
CGaAttcCAAcCtagAaTTtT |  | Rv0063 Rv0208c Rv0309 Rv0312 Rv0888 Rv1433 Rv1435c Rv1469 Rv1477 Rv1690 Rv1987 Rv2152c Rv2154c Rv2155c Rv2457c Rv2721c Rv3096 Rv3209 Rv3310 Rv3413c Rv3675 Rv3717 | trmB ctpD lprJ murC ftsW murD clpX ACID PHOSPHOMONOESTERASE | POSSIBLE OXIDOREDUCTASE | tRNA (guanine-N(7))-methyltransferase | POSSIBLE CONSERVED EXPORTED PROTEIN | CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN | PROBABLE EXPORTED PROTEIN | Probable conserved Proline, Glycine, Valine-rich secreted protein | PROBABLE CATION TRANSPORTER P-TYPE ATPASE D CTPD | HYPOTHETICAL INVASION PROTEIN | PROBABLE LIPOPROTEIN LPRJ | POSSIBLE CHITINASE | UDP-N-acetylmuramate--L-alanine ligase | FtsW-like protein FtsW | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase | ATP-dependent protease ATP-binding subunit | POSSIBLE CONSERVED TRANSMEMBRANE ALANINE AND GLYCINE RICH PROTEIN | hypothetical protein | CONSERVED HYPOTHETICAL THREONIN AND PROLINE RICH PROTEIN | POSSIBLE ACID PHOSPHATASE (ACID PHOSPHOMONOESTERASE) (PHOSPHOMONOESTERASE) (GLYCEROPHOSPHATASE) | HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN | POSSIBLE MEMBRANE PROTEIN |
| 108 | 18 | 35 | -38.379 | 0.341 | 
Residual = 0.341 |  | 
GcGCCGaTGTTGAtC | 
ACTTGAAA |  | Rv0049 Rv0490 Rv0495c Rv0505c Rv0938 Rv1594 Rv1595 Rv1916 Rv1925 Rv2181 Rv2495c Rv2496c Rv2678c Rv2753c Rv3244c Rv3408 Rv3869 Rv3875 | senX3 serB1 nadA nadB aceAb fadD31 pdhC pdhB hemE dapA lpqB esxA | hypothetical protein | PUTATIVE TWO COMPONENT SENSOR HISTIDINE KINASE SENX3 | POSSIBLE PHOSPHOSERINE PHOSPHATASE SERB1 (PSP) (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) | ATP-dependent DNA ligase | quinolinate synthetase | L-aspartate oxidase | isocitrate lyase | acyl-CoA synthetase | Probable conserved integral membrane protein | branched-chain alpha-keto acid dehydrogenase subunit E2 | PROBABLE PYRUVATE DEHYDROGENASE E1 COMPONENT (BETA SUBUNIT) PDHB (PYRUVATE DECARBOXYLASE) (PYRUVATE DEHYDROGENASE) (PYRUVIC DEHYDROGENASE) | uroporphyrinogen decarboxylase | dihydrodipicolinate synthase | PROBABLE CONSERVED LIPOPROTEIN LPQB | POSSIBLE CONSERVED MEMBRANE PROTEIN | 6 KDA EARLY SECRETORY ANTIGENIC TARGET ESXA (ESAT-6) |
| 109 | 17 | 33 | -64.558 | 0.278 | 
Residual = 0.278 |  | 
CtaCAAgCGATTCCGCgCGctTCc | 
TtGcaTcCtTTtCC |  | Rv0064 Rv1161 Rv1576c Rv1577c Rv2005c Rv2498c Rv2499c Rv2554c Rv2650c Rv2651c Rv2658c Rv2665 Rv2686c Rv2688c Rv3606c Rv3607c Rv3609c | narG citE folK folB folE | hypothetical protein | PROBABLE RESPIRATORY NITRATE REDUCTASE (ALPHA CHAIN) NARG | Probable phiRV1 phage protein | Probable phiRv1 phage protein | PROBABLE CITRATE (PRO-3S)-LYASE (BETA SUBUNIT) CITE (CITRASE) (CITRATASE) (CITRITASE) (CITRIDESMOLASE) (CITRASE ALDOLASE) | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | Holliday junction resolvase-like protein | POSSIBLE phiRv2 PROPHAGE PROTEIN | POSSIBLE phiRv2 PROPHAGE PROTEASE | POSSIBLE PROPHAGE PROTEIN | HYPOTHETICAL ARGININE RICH PROTEIN | PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND ALANINE AND VALINE RICH PROTEIN ABC TRANSPORTER | PROBABLE ANTIBIOTIC-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER | 2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDI NE PYROPHOSPHOKINASE FOLK (7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE) (HPPK) (6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE) (PPPK) (2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE DIPHOSPHOKINASE) (7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN-DIPHOSPHOKINASE) (6-HYDROXYMETHYL-7,8-DIHYDROPTERIN DIPHOSPHOKINASE) | PROBABLE DIHYDRONEOPTERIN ALDOLASE FOLB (DHNA) | GTP cyclohydrolase I |
| 110 | 29 | 36 | -30.665 | 0.438 | 
Residual = 0.438 |  | 
cAaagCTcGGcAAggAtggcG | 
GGTgGaTCAtC |  | ORF01163 ORF03093 ORF03865 Rv0239 Rv0240 Rv0352 Rv0526 Rv0659c Rv0922 Rv1303 Rv1585c Rv1907c Rv1908c Rv1982c Rv2009 Rv2010 Rv2017 Rv2168c Rv2193 Rv2194 Rv2327 Rv2480c Rv2630 Rv2736c Rv2737c Rv2963 Rv3050c Rv3222c Rv3760 | dnaJ1 THIOL-DISULFIDE INTERCHANGE PROTEIN katG ctaE qcrC recX recA PROBABLY ASNC-FAMILY | hypothetical protein | PROBABLE CHAPERONE PROTEIN DNAJ1 | POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) | POSSIBLE TRANSPOSASE | Possible phage phiRv1 protein | CATALASE-PEROXIDASE-PEROXYNITRITASE T KATG | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE TRANSPOSASE | PROBABLE CYTOCHROME C OXIDASE (SUBUNIT III) CTAE | Probable Ubiquinol-cytochrome C reductase QcrC(cytochrome C subunit) | recombination regulator RecX | recombinase A | PROBABLE INTEGRAL MEMBRANE PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| 111 | 29 | 35 | -38.570 | 0.349 | 
Residual = 0.349 |  | 
AcTTCGGcnAACgaTnTaT | 
AtTAtAAcACGTTcTAAT |  | ORF01809 ORF04431 ORF05528 ORF06004 ORFD0232 Rv0265c Rv0474 Rv0502 Rv0749 Rv0790c Rv0791c Rv0792c Rv0940c Rv1015c Rv1168c Rv1285 Rv1288 Rv1290c Rv1392 Rv2058c Rv2104c Rv2136c Rv2334 Rv2396 Rv2518c Rv2607 Rv2623 Rv3491 Rv3855 | PROBABLY GNTR-FAMILY rplY PPE17 cysD metK rpmB uppP cysK1 PE_PGRS41 lppS pdxH TB31.7 ethR | PROBABLE PERIPLASMIC IRON-TRANSPORT LIPOPROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | hypothetical protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) | POSSIBLE OXIDOREDUCTASE | 50S ribosomal protein L25/general stress protein Ctc | PPE FAMILY PROTEIN | sulfate adenylyltransferase subunit 2 | S-adenosylmethionine synthetase | 50S ribosomal protein L28 | undecaprenyl pyrophosphate phosphatase | PROBABLE CYSTEINE SYNTHASE A CYSK1 (O-ACETYLSERINE SULFHYDRYLASE A) (O-ACETYLSERINE (THIOL)-LYASE A) (CSASE A) | PE-PGRS FAMILY PROTEIN | PROBABLE CONSERVED LIPOPROTEIN LPPS | pyridoxamine 5'-phosphate oxidase | TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHR |
| 112 | 19 | 39 | -45.776 | 0.340 | 
Residual = 0.340 |  | 
CngCAtCgTCGaCGa | 
TcttcgGcTGaCagctcaTCAaag |  | Rv0248c Rv0554 Rv1182 Rv1215c Rv1437 Rv1676 Rv1677 Rv1871c Rv1872c Rv2062c Rv3153 Rv3254 Rv3281 Rv3494c Rv3495c Rv3496c Rv3497c Rv3498c Rv3499c | sdhA bpoC papA3 pgk dsbF lldD2 cobN nuoI mce4F lprN mce4D mce4C mce4B mce4A | succinate dehydrogenase flavoprotein subunit | POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE) | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA3 | hypothetical protein | phosphoglycerate kinase | PROBABLE CONSERVED LIPOPROTEIN DSBF | POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD2 | cobaltochelatase | NADH dehydrogenase subunit I | MCE-FAMILY PROTEIN MCE4F | POSSIBLE MCE-FAMILY LIPOPROTEIN LPRN (MCE-FAMILY LIPOPROTEIN MCE4E) | MCE-FAMILY PROTEIN MCE4D | MCE-FAMILY PROTEIN MCE4C | MCE-FAMILY PROTEIN MCE4B | MCE-FAMILY PROTEIN MCE4A |
| 113 | 18 | 37 | -43.080 | 0.318 | 
Residual = 0.318 |  | 
TAGAAAaCT | 
TTGTcgAT |  | Rv0423c Rv0868c Rv1083 Rv1248c Rv1843c Rv2260 Rv2507 Rv2586c Rv2587c Rv3044 Rv3283 Rv3318 Rv3719 Rv3720 Rv3870 Rv3877 Rv3888c Rv3910 | thiC moaD2 kgd guaB1 secF secD fecB sseA sdhA | thiamine biosynthesis protein ThiC | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D 2 MOAD2 (MOLYBDOPTERIN CONVERTING FACTOR SMALL SUBUNIT) (MOLYBDOPTERIN [MPT] CONVERTING FACTOR, SUBUNIT 1) | hypothetical protein | alpha-ketoglutarate decarboxylase | inositol-5-monophosphate dehydrogenase | POSSIBLE CONSERVED PROLINE RICH MEMBRANE PROTEIN | preprotein translocase subunit SecF | preprotein translocase subunit SecD | PROBABLE FEIII-DICITRATE-BINDING PERIPLASMIC LIPOPROTEIN FECB | PROBABLE THIOSULFATE SULFURTRANSFERASE SSEA (RHODANESE) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) | succinate dehydrogenase flavoprotein subunit | POSSIBLE FATTY ACID SYNTHASE | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE CONSERVED MEMBRANE PROTEIN |
| 114 | 29 | 36 | -33.298 | 0.421 | 
Residual = 0.421 |  | 
CGAcAAgatCA | 
GtgCtgGCtGagAaCgcCGA |  | Rv0047c Rv0259c Rv0383c Rv0628c Rv0659c Rv0660c Rv0752c Rv0932c Rv1046c Rv1161 Rv1584c Rv1593c Rv1929c Rv1991c Rv2413c Rv2543 Rv2650c Rv2657c Rv2901c Rv2926c Rv3182 Rv3385c Rv3420c Rv3422c Rv3423c Rv3503c Rv3504 Rv3582c Rv3583c | fadE9 pstS2 narG lppA rimI alr fdxD fadE26 ispD | hypothetical protein | POSSIBLE CONSERVED SECRETED PROTEIN | PROBABLE ACYL-CoA DEHYDROGENASE FADE9 | PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS2 (PBP-2) (PSTS2) | PROBABLE RESPIRATORY NITRATE REDUCTASE (ALPHA CHAIN) NARG | Possible phiRv1 phage protein | PROBABLE CONSERVED LIPOPROTEIN LPPA | POSSIBLE phiRv2 PROPHAGE PROTEIN | PROBABLE phiRv2 PROPHAGE PROTEIN | PROBABLE RIBOSOMAL-PROTEIN-ALANINE ACETYLTRANSFERASE RIMI (ACETYLATING ENZYME FOR N-TERMINAL OF RIBOSOMAL PROTEIN S18) | alanine racemase | PROBABLE FERREDOXIN FDXD | PROBABLE ACYL-CoA DEHYDROGENASE FADE26 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | POSSIBLE TRANSCRIPTION FACTOR |
| 115 | 37 | 38 | -28.654 | 0.436 | 
Residual = 0.436 |  | 
TacgtnCTAaAnAnnnAAtGTCGA | 
CGACnaatTnGACACgtnGtA |  | ORF01151 ORF04123 ORFD0400 Rv0088 Rv0238 Rv0476 Rv0750 Rv0813c Rv0830 Rv1216c Rv1218c Rv1219c Rv1265 Rv1284 Rv1398c Rv1403c Rv1404 Rv1646 Rv1787 Rv1795 Rv1893 Rv1990c Rv2034 Rv2035 Rv2160c Rv2295 Rv2342 Rv2371 Rv2663 Rv2777c Rv2829c Rv2961 Rv3526 Rv3742c Rv3854c Rv3855 Rv3917c | PROBABLY TETR-FAMILY PE17 PPE25 PE_PGRS40 ethA ethR parB | hypothetical protein | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | PROBABLE TETRONASIN-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PUTATIVE METHYLTRANSFERASE | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | Probable ArsR-type repressor protein | PE-PGRS FAMILY PROTEIN | PROBABLE TRANSPOSASE | POSSIBLE OXIDOREDUCTASE | MONOOXYGENASE ETHA | TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHR | PROBABLE CHROMOSOME PARTITIONING PROTEIN PARB |
| 116 | 20 | 34 | -33.092 | 0.390 | 
Residual = 0.390 |  | 
ttgntCgGtGaGAT | 
aGACcACtGaTTT |  | ORF02072 ORF05284 ORF06170 Rv0682 Rv0739 Rv0740 Rv1637c Rv2075c Rv2132 Rv2205c Rv2412 Rv2585c Rv2840c Rv2843 Rv2986c Rv2999 Rv3194c Rv3674c Rv3739c Rv3893c | rpsL rpsT hupB lppY nth PPE67 PE36 | 30S ribosomal protein S12 | hypothetical protein | Possible hypothetical exported or envelope protein | 30S ribosomal protein S20 | POSSIBLE CONSERVED LIPOPROTEIN | PROBABLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN | PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) | PROBABLE CONSERVED LIPOPROTEIN LPPY | POSSIBLE CONSERVED SECRETED PROTEIN | PROBABLE ENDONUCLEASE III NTH (DNA-(APURINIC OR APYRIMIDINIC SITE)LYASE) (AP LYASE) (AP ENDONUCLEASE CLASS I) (ENDODEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) (DEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) | PPE FAMILY PROTEIN | PE FAMILY PROTEIN |
| 117 | 22 | 39 | -24.874 | 0.491 | 
Residual = 0.491 |  | 
TACGcCATcGCaATaCcatTGCGG | 
AttaAtAaAGaaTT |  | ORF01125 ORFD0126 Rv0309 Rv0730 Rv0947c Rv1270c Rv1444c Rv1516c Rv1815 Rv1856c Rv1857 Rv1883c Rv1884c Rv2301 Rv2329c Rv2352c Rv2450c Rv3260c Rv3311 Rv3354 Rv3763 Rv3788 | lprA modA rpfC cut2 narK1 PPE38 rpfE whiB2 lpqH | POSSIBLE CONSERVED EXPORTED PROTEIN | hypothetical protein | POSSIBLE LIPOPROTEIN LPRA | probable sugar transferase | short chain dehydrogenase | PROBABLE MOLYBDATE-BINDING LIPOPROTEIN MODA | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFC | PROBABLE CUTINASE CUT2 | PROBABLE NITRITE EXTRUSION PROTEIN 1 NARK1 (NITRITE FACILITATOR 1) | PPE FAMILY PROTEIN | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFE | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB2 | 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH | nucleoside diphosphate kinase regulator |
| 118 | 31 | 36 | -25.319 | 0.444 | 
Residual = 0.444 |  | 
GCTGAGATgcTgaA | 
antgTtGCTtanggTTAtGa |  | ORF05040 ORFD0310.1 Rv0611c Rv1080c Rv1439c Rv1641 Rv1642 Rv1643 Rv1644 Rv1649 Rv1926c Rv1986 Rv2205c Rv2299c Rv2306c Rv2387 Rv2432c Rv2465c Rv2584c Rv2645 Rv2699c Rv2840c Rv2930 Rv3363c Rv3489 Rv3490 Rv3491 Rv3603c Rv3847 Rv3893c Rv3923c | greA infC rpmI rplT tsnR pheS mpt63 htpG apt fadD26 otsA PE36 rnpA | hypothetical protein | transcription elongation factor GreA | translation initiation factor IF-3 | 50S ribosomal protein L35 | 50S ribosomal protein L20 | Possible 23S rRNA methyltransferase tsnR | phenylalanyl-tRNA synthetase subunit alpha | IMMUNOGENIC PROTEIN MPT63 (ANTIGEN MPT63/MPB63) (16 kDa IMMUNOPROTECTIVE EXTRACELLULAR PROTEIN) | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | heat shock protein 90 | ribose-5-phosphate isomerase B | adenine phosphoribosyltransferase | acyl-CoA synthetase | PROBABLE ALPHA, ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] OTSA (TREHALOSE-6-PHOSPHATE SYNTHASE) (UDP-GLUCOSE-GLUCOSEPHOSPHATE GLUCOSYLTRANSFERASE) (TREHALOSEPHOSPHATE-UDP GLUCOSYLTRANSFERASE) (TREHALOSE-6-PHOSPHATE SYNTHETASE) (TREHALOSE-PHOSPHATE SYNTHASE) (TREHALOSE-PHOSPHATE SYNTHETASE) (TRANSGLUCOSYLASE) (TREHALOSEPHOSPHATE-UDP GLUCOSYL TRANSFERASE) | CONSERVED HYPOTHETICAL ALANINE AND LEUCINE RICH PROTEIN | PE FAMILY PROTEIN | ribonuclease P |
| 119 | 21 | 36 | -41.243 | 0.364 | 
Residual = 0.364 |  | 
TGtGGaACtGgAnctaaA | 
TTTGATCA |  | ORFD0244 ORFD0322 Rv0077c Rv0277c Rv0425c Rv0426c Rv0520 Rv0860 Rv1462 Rv1464 Rv1466 Rv1670 Rv1685c Rv1686c Rv1687c Rv1861 Rv1888c Rv2827c Rv3083 Rv3086 Rv3760 | ctpH FRAGMENT fadB csd HYDROXYLASE adhD | PROBABLE OXIDOREDUCTASE | hypothetical protein | POSSIBLE METAL CATION TRANSPORTING P-TYPE ATPASE CTPH | POSSIBLE TRANSMEMBRANE PROTEIN | POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT) | PROBABLE FATTY OXIDATION PROTEIN FADB | PROBABLE CYSTEINE DESULFURASE CSD | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE MONOOXYGENASE (HYDROXYLASE) | PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE ADHD (ALDEHYDE REDUCTASE) | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| 120 | 20 | 35 | -47.415 | 0.338 | 
Residual = 0.338 |  | 
agcTCGTCATCGCgA | 
aAGACATTGT |  | Rv0055 Rv0056 Rv0707 Rv0708 Rv0714 Rv0715 Rv0719 Rv0871 Rv0891c Rv1516c Rv1857 Rv2275 Rv2445c Rv2763c Rv2908c Rv2909c Rv2959c Rv3102c Rv3172c Rv3481c | rpsR rplI rpsC rplP rplN rplX rplF cspB modA ndk dfrA rpsP METHYLASE ftsE | 30S ribosomal protein S18 | 50S ribosomal protein L9 | 30S ribosomal protein S3 | 50S ribosomal protein L16 | 50S ribosomal protein L14 | 50S ribosomal protein L24 | 50S ribosomal protein L6 | PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | probable sugar transferase | PROBABLE MOLYBDATE-BINDING LIPOPROTEIN MODA | hypothetical protein | nucleoside diphosphate kinase | DIHYDROFOLATE REDUCTASE DFRA (DHFR) (TETRAHYDROFOLATE DEHYDROGENASE) | 30S ribosomal protein S16 | POSSIBLE METHYLTRANSFERASE (METHYLASE) | PUTATIVE CELL DIVISION ATP-BINDING PROTEIN FTSE (SEPTATION COMPONENT-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER) | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| 121 | 14 | 35 | -66.934 | 0.252 | 
Residual = 0.252 |  | 
TTGTCgGnccctGCtctgAtgAT | 
GAGCatCtcTTtGCGGgGtGatGA |  | Rv0336 Rv0412c Rv0922 Rv1063c Rv1405c Rv1588c Rv1702c Rv1765c Rv2015c Rv3010c Rv3206c Rv3245c Rv3424c Rv3466 | pfkA moeB1 mtrB | CONSERVED 13E12 REPEAT FAMILY PROTEIN | POSSIBLE CONSERVED MEMBRANE PROTEIN | POSSIBLE TRANSPOSASE | hypothetical protein | PUTATIVE METHYLTRANSFERASE | Partial REP13E12 repeat protein | 6-phosphofructokinase | molybdopterin biosynthesis-like protein MoeZ | TWO COMPONENT SENSORY TRANSDUCTION HISTIDINE KINASE MTRB |
| 122 | 15 | 35 | -57.493 | 0.294 | 
Residual = 0.294 |  | 
GAtGCgaTGACagCCGACCC | 
TAGGAaCGCtAccTCAGCGaG |  | Rv0199 Rv0431 Rv0432 Rv0546c Rv0636 Rv0652 Rv1241 Rv1408 Rv1590 Rv2069 Rv2238c Rv2462c Rv2951c Rv2952 Rv2993c | sodC rplL rpe sigC ahpE tig METHYLASE HHDD ISOMERASE | PROBABLE CONSERVED MEMBRANE PROTEIN | PUTATIVE TUBERCULIN RELATED PEPTIDE | PROBABLE PERIPLASMIC SUPEROXIDE DISMUTASE [CU-ZN] SODC | hypothetical protein | 50S ribosomal protein L7/L12 | ribulose-phosphate 3-epimerase | RNA polymerase sigma factor SigC | Probable peroxiredoxin AhpE | trigger factor | POSSIBLE OXIDOREDUCTASE | POSSIBLE METHYLTRANSFERASE (METHYLASE) | POSSIBLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD ISOMERASE) |
| 123 | 22 | 37 | -27.162 | 0.443 | 
Residual = 0.443 |  | 
GgATtACCGTC | 
GAttTtCgCtGAgca |  | ORF02072 ORF08416 Rv0430 Rv0714 Rv0739 Rv0740 Rv0909 Rv1041c Rv1221 Rv1365c Rv1535 Rv1815 Rv1856c Rv1876 Rv1878 Rv2020c Rv2204c Rv2352c Rv2632c Rv2764c Rv2876 Rv2986c | rplN sigE rsfA bfrA glnA3 PPE38 thyA hupB | hypothetical protein | 50S ribosomal protein L14 | PROBABLE IS LIKE-2 TRANSPOSASE | RNA polymerase sigma factor SigE | ANTI-ANTI-SIGMA FACTOR RSFA (ANTI-SIGMA FACTOR ANTAGONIST) (REGULATOR OF SIGMA F A) | short chain dehydrogenase | PROBABLE BACTERIOFERRITIN BFRA | PROBABLE GLUTAMINE SYNTHETASE GLNA3 (GLUTAMINE SYNTHASE) (GS-I) | PPE FAMILY PROTEIN | thymidylate synthase | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) |
| 124 | 20 | 34 | -40.305 | 0.368 | 
Residual = 0.368 |  | 
TTGGTGTCAGTTTGACGATCTGA | 
GCcgGattTgGtCGGTGtGG |  | Rv0050 Rv0241c Rv0247c Rv0284 Rv0289 Rv0290 Rv0291 Rv0292 Rv0315 Rv0934 Rv1295 Rv1309 Rv1310 Rv1836c Rv3017c Rv3019c Rv3020c Rv3151 Rv3155 Rv3157 | ponA1 mycP3 pstS1 thrC atpG atpD esxQ esxR esxS nuoG nuoK nuoM | PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) | hypothetical protein | fumarate reductase iron-sulfur subunit | POSSIBLE CONSERVED MEMBRANE PROTEIN | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) | POSSIBLE BETA-1,3-GLUCANASE PRECURSOR | PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS1 (PBP-1) (PSTS1) | threonine synthase | F0F1 ATP synthase subunit gamma | F0F1 ATP synthase subunit beta | ESAT-6 LIKE PROTEIN ESXQ (TB12.9) (ESAT-6 LIKE PROTEIN 8) | SECRETED ESAT-6 LIKE PROTEIN ESXR (TB10.3) (ESAT-6 LIKE PROTEIN 9) | ESAT-6 LIKE PROTEIN ESXS | NADH dehydrogenase subunit G | NADH dehydrogenase subunit K | NADH dehydrogenase subunit M |
| 125 | 17 | 36 | -36.046 | 0.362 | 
Residual = 0.362 |  | 
GCCgGTGctGTGCT | 
TGAAACTT |  | Rv0875c Rv1100 Rv1333 Rv1540 Rv2181 Rv2310 Rv2326c Rv2365c Rv2367c Rv2368c Rv2589 Rv2678c Rv3245c Rv3339c Rv3433c Rv3869 Rv3871 | phoH1 gabT hemE mtrB icd1 | POSSIBLE CONSERVED EXPORTED PROTEIN | hypothetical protein | PROBABLE HYDROLASE | CONSERVED HYPOTHETICAL PROTEIN MEMBER OF yabO/yceC/yfiI FAMILY | Probable conserved integral membrane protein | POSSIBLE EXCISIONASE | POSSIBLE TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSORTER | PROBABLE PHOH-LIKE PROTEIN PHOH1 (PHOSPHATE STARVATION-INDUCIBLE PROTEIN PSIH) | 4-aminobutyrate aminotransferase | uroporphyrinogen decarboxylase | TWO COMPONENT SENSORY TRANSDUCTION HISTIDINE KINASE MTRB | isocitrate dehydrogenase | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| 126 | 24 | 38 | -30.254 | 0.433 | 
Residual = 0.433 |  | 
GGtggAaCgtAAGCGTGGtCgAC | 
ACCGGAAGCGAACACTGTCACACA |  | ORF02571 ORFD0373 Rv0039c Rv0251c Rv0253 Rv0280 Rv0496 Rv0540 Rv1256c Rv1388 Rv1773c Rv1873 Rv2213 Rv2572c Rv2837c Rv2838c Rv2940c Rv2948c Rv3031 Rv3233c Rv3417c Rv3484 Rv3793 Rv3920c | hsp nirD PPE3 cyp130 mihF pepB aspS rbfA mas fadD22 groEL cpsA embC | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) | PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD | PPE FAMILY PROTEIN | hypothetical protein | PROBA BLE CYTOCHROME P450 130 CYP130 | PUTATIVE INTEGRATION HOST FACTOR MIHF | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | leucyl aminopeptidase | aspartyl-tRNA synthetase | ribosome-binding factor A | PROBABLE MULTIFUNCTIONAL MYCOCEROSIC ACID SYNTHASE MEMBRANE-ASSOCIATED MAS | acyl-CoA synthetase | chaperonin GroEL | POSSIBLE CONSERVED PROTEIN CPSA | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBC (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) | HYPOTHETICAL PROTEIN SIMILAR TO JAG PROTEIN |
| 127 | 30 | 35 | -21.196 | 0.463 | 
Residual = 0.463 |  | 
tGGTCttc | 
TaaTctgcgcGAgcCTGGTG |  | ORF00385 ORF06120 ORF08400 Rv0038 Rv0423c Rv0530 Rv0937c Rv0981 Rv1126c Rv1223 Rv1487 Rv1565c Rv1797 Rv1810 Rv1845c Rv1862 Rv2093c Rv2345 Rv2444c Rv2447c Rv3095 Rv3103c Rv3139 Rv3140 Rv3299c Rv3437 Rv3519 Rv3837c Rv3877 Rv3905c | thiC mprA htrA adhA tatC rne folC fadE24 fadE23 atsB PHOSPHOGLYCEROMUTASE esxF | hypothetical protein | thiamine biosynthesis protein ThiC | MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) | PROBABLE SERINE PROTEASE HTRA (DEGP PROTEIN) | Probable alcohol dehydrogenase adhA | Probable Sec-independent protein translocase transmembrane protein tatC | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | POSSIBLE RIBONUCLEASE E RNE | PROBABLE FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC (FOLYLPOLY-GAMMA-GLUTAMATE SYNTHETASE) (FPGS) | HYPOTHETICAL TRANSCRIPTIONAL REGULATORY PROTEIN | HYPOTHETICAL PROLINE-RICH PROTEIN | PROBABLE ACYL-CoA DEHYDROGENASE FADE24 | PROBABLE ACYL-CoA DEHYDROGENASE FADE23 | PROBABLE ARYLSULFATASE ATSB (ARYL-SULFATE SULPHOHYDROLASE) (SULFATASE) | PROBABLE PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCEROMUTASE) (PHOSPHOGLYCERATE PHOSPHOMUTASE) | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PUTATIVE ESAT-6 LIKE PROTEIN ESXF (HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 13) |
| 128 | 13 | 38 | -50.847 | 0.287 | 
Residual = 0.287 |  | 
ATCgaGtT | 
AAACAaAA |  | Rv0176 Rv0177 Rv0248c Rv0642c Rv0684 Rv0685 Rv1172c Rv2102 Rv2945c Rv2947c Rv3598c Rv3646c Rv3921c | sdhA mmaA4 fusA1 tuf PE12 lppX pks15 lysS topA | PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN | PROBABLE CONSERVED MCE ASSOCIATED PROTEIN | succinate dehydrogenase flavoprotein subunit | METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) | elongation factor G | elongation factor Tu | PE FAMILY PROTEIN | hypothetical protein | PROBABLE CONSERVED LIPOPROTEIN LPPX | PROBABLE POLYKETIDE SYNTHASE PKS15 | lysyl-tRNA synthetase | DNA topoisomerase I | putative inner membrane protein translocase component YidC |
| 129 | 24 | 38 | -35.678 | 0.410 | 
Residual = 0.410 |  | 
CgATGCagAgCgccgCGAtcAGGa | 
ACGatGCAGngCGAAgCGAtG |  | ORF00122 ORF03865 ORF04157 Rv0009 Rv0642c Rv0831c Rv1175c Rv1281c Rv1303 Rv1681 Rv2258c Rv2259 Rv2405 Rv2427c Rv2733c Rv2882c Rv2928 Rv3215 Rv3224 Rv3280 Rv3464 Rv3592 Rv3725 Rv3914 | ppiA mmaA4 fadH oppD moeX adhE2 proA frr tesA entC accD5 rmlB TB11.2 trxC | PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) | METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) | hypothetical protein | PROBABLE NADPH DEPENDENT 2,4-DIENOYL-COA REDUCTASE FADH (2,4-dienoyl coenzyme A reductase) (4-enoyl-CoA reductase) | PROBABLE OLIGOPEPTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER OPPD | POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEX | Possible transcriptional regulatory protein | Probable zinc-dependent alcohol dehydrogenase AdhE2 | gamma-glutamyl phosphate reductase | CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN | ribosome recycling factor | PROBABLE THIOESTERASE TESA | isochorismate synthase | short chain dehydrogenase | PROBABLE PROPIONYL-CoA CARBOXYLASE BETA CHAIN 5 ACCD5 (PCCASE) (PROPANOYL-COA:CARBON DIOXIDE LIGASE) | dTDP-GLUCOSE 4,6-DEHYDRATASE RMLB | POSSIBLE OXIDOREDUCTASE | THIOREDOXIN TRXC (TRX) (MPT46) |
| 130 | 15 | 37 | -46.996 | 0.351 | 
Residual = 0.351 |  | 
ACcACGAAAAA | 
GCtcGtnAcCcaaacnCtgGTtGA |  | ORFD0052 Rv0692 Rv0693 Rv0694 Rv0696 Rv1196 Rv1215c Rv1368 Rv1728c Rv2220 Rv3232c Rv3291c Rv3318 Rv3319 Rv3487c | pqqE lldD1 PPE18 lprF glnA1 pvdS PROBABLY ASNC-FAMILY sdhA sdhB lipF | hypothetical protein | PROBABLE COENZYME PQQ SYNTHESIS PROTEIN E PQQE (COENZYME PQQ SYNTHESIS PROTEIN III) | POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD1 | PROBABLE MEMBRANE SUGAR TRANSFERASE | PPE FAMILY PROTEIN | PROBABLE CONSERVED LIPOPROTEIN LPRF | GLUTAMINE SYNTHETASE GLNA1 (GLUTAMINE SYNTHASE) (GS-I) | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN PVDS (PROBABLE RNA POLYMERASE SIGMA FACTOR) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) | succinate dehydrogenase flavoprotein subunit | succinate dehydrogenase iron-sulfur subunit | PROBABLE ESTERASE/LIPASE LIPF |
| 131 | 29 | 37 | -23.304 | 0.513 | 
Residual = 0.513 |  | 
tcTaTgTgcaAcGtcTAcTgT | 
agGcaATGcGgtcGggaACTG |  | ORF00090 ORF02734 Rv0253 Rv0572c Rv0824c Rv0855 Rv1176c Rv1177 Rv1403c Rv1405c Rv1442 Rv1520 Rv1542c Rv1760 Rv1813c Rv1997 Rv2029c Rv2067c Rv2175c Rv2324 Rv2389c Rv2390c Rv2724c Rv2892c Rv2935 Rv3338 Rv3484 Rv3548c Rv3782 | nirD desA1 far fdxC bisC glbN ctpF pfkB PROBABLY ASNC-FAMILY rpfD fadE20 PPE45 ppsE cpsA | PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD | hypothetical protein | PROBABLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA1 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE) (PROTEIN DES) | PROBABLE FATTY-ACID-CoA RACEMASE FAR | PROBABLE FERREDOXIN FDXC | PUTATIVE METHYLTRANSFERASE | PROBABLE BIOTIN SULFOXIDE REDUCTASE BISC (BDS reductase) (BSO reductase) | probable sugar transferase | Probable hemoglobin glbN | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF | Probable phosphofructokinase PfkB (PHOSPHOHEXOKINASE) | conserved hypothetical regulatory protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFD | PROBABLE ACYL-CoA DEHYDROGENASE FADE20 | PPE FAMILY PROTEIN | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSE | POSSIBLE CONSERVED PROTEIN CPSA | short chain dehydrogenase | POSSIBLE L-RHAMNOSYLTRANSFERASE |
| 132 | 28 | 38 | -16.151 | 0.507 | 
Residual = 0.507 |  | 
AcnACTgTTG | 
TgCtgtGCAaAGagGCAgt |  | ORF03288 ORF03593 Rv0164 Rv0207c Rv0259c Rv0315 Rv0504c Rv0516c Rv0605 Rv0788 Rv0806c Rv0886 Rv1790 Rv1886c Rv1939 Rv2302 Rv2471 Rv2493 Rv3115 Rv3137 Rv3337 Rv3416 Rv3614c Rv3615c Rv3633 Rv3653 Rv3750c Rv3864 | TB18.5 purQ cpsY fprB PPE27 fbpB aglA whiB3 PE_PGRS61 | hypothetical protein | POSSIBLE BETA-1,3-GLUCANASE PRECURSOR | POSSIBLE RESOLVASE | phosphoribosylformylglycinamidine synthase subunit I | POSSIBLE UDP-GLUCOSE-4-EPIMERASE CPSY (GALACTOWALDENASE) (UDP-GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE-4-EPIMERASE) | PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) | PPE FAMILY PROTEIN | SECRETED ANTIGEN 85-B FBPB (85B) (ANTIGEN 85 COMPLEX B) (MYCOLYL TRANSFERASE 85B) (FIBRONECTIN-BINDING PROTEIN B) (EXTRACELLULAR ALPHA-ANTIGEN) | PROBABLE OXIDOREDUCTASE | PROBABLE ALPHA-GLUCOSIDASE AGLA (MALTASE) (GLUCOINVERTASE) (GLUCOSIDOSUCRASE) (MALTASE-GLUCOAMYLASE) (LYSOSOMAL ALPHA-GLUCOSIDASE) (ACID MALTASE) | PROBABLE TRANSPOSASE | PROBABLE MONOPHOSPHATASE | TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB3 | PE-PGRS FAMILY-RELATED PROTEIN | POSSIBLE EXCISIONASE |
| 133 | 7 | 36 | -75.869 | 0.201 | 
Residual = 0.201 |  | 
aTCGCCGA | 
GAAaAccA |  | Rv0717 Rv0718 Rv0719 Rv0720 Rv3442c Rv3443c Rv3922c | rpsN rpsH rplF rplR rpsI rplM | 30S ribosomal protein S14 | 30S ribosomal protein S8 | 50S ribosomal protein L6 | 50S ribosomal protein L18 | 30S ribosomal protein S9 | 50S ribosomal protein L13 | hypothetical protein |
| 134 | 28 | 37 | -23.467 | 0.481 | 
Residual = 0.481 |  | 
GTGTCGCtGCa | 
GGGtGAgTGTCtTCa |  | ORF08400 ORFD0228 Rv0212c Rv0270 Rv0534c Rv0960 Rv1095 Rv1127c Rv1331 Rv1415 Rv1536 Rv1546 Rv1570 Rv2153c Rv2325c Rv2417c Rv2447c Rv2619c Rv2752c Rv2849c Rv2879c Rv2895c Rv2900c Rv3299c Rv3865 Rv3866 Rv3867 Rv3871 | nadR fadD2 menA phoH2 ppdK clpS ribA2 ileS bioD murG folC cobO viuB fdhF atsB | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN NADR (PROBABLY ASNC-FAMILY) | acyl-CoA synthetase | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | hypothetical protein | PROBABLE PHOH-LIKE PROTEIN PHOH2 (PHOSPHATE STARVATION-INDUCIBLE PROTEIN PSIH) | pyruvate phosphate dikinase | ATP-dependent Clp protease adaptor protein ClpS | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein | isoleucyl-tRNA synthetase | dithiobiotin synthetase | N-acetylglucosaminyl transferase | PROBABLE FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC (FOLYLPOLY-GAMMA-GLUTAMATE SYNTHETASE) (FPGS) | cob(I)yrinic acid a,c-diamide adenosyltransferase | POSSIBLE MYCOBACTIN UTILIZATION PROTEIN VIUB | POSSIBLE FORMATE DEHYDROGENASE H FDHF (FORMATE-HYDROGEN-LYASE-LINKED, SELENOCYSTEINE-CONTAINING POLYPEPTIDE) (FORMATE DEHYDROGENASE-H ALPHA SUBUNIT) (FDH-H) | PROBABLE ARYLSULFATASE ATSB (ARYL-SULFATE SULPHOHYDROLASE) (SULFATASE) |
| 135 | 13 | 36 | -72.472 | 0.273 | 
Residual = 0.273 |  | 
GcTGctcGnCGgCgagaTgcaCGA | 
GGTcgnaGaCTGaCCtGcCCt |  | Rv0566c Rv1241 Rv1242 Rv1613 Rv1614 Rv2068c Rv2069 Rv2213 Rv2564 Rv2911 Rv2945c Rv2952 Rv2954c | trpA lgt blaC sigC pepB glnQ dacB2 lppX METHYLASE | nucleotide-binding protein | hypothetical protein | tryptophan synthase subunit alpha | prolipoprotein diacylglyceryl transferase | CLASS A BETA-LACTAMASE BLAC | RNA polymerase sigma factor SigC | leucyl aminopeptidase | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER GLNQ | PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2 (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE) | PROBABLE CONSERVED LIPOPROTEIN LPPX | POSSIBLE METHYLTRANSFERASE (METHYLASE) |
| 136 | 26 | 36 | -28.336 | 0.448 | 
Residual = 0.448 |  | 
CGnTgaCcaCGaTG | 
CCGagACCGaCGcCG |  | ORF00915 ORF05088 Rv0015c Rv0571c Rv0615 Rv0981 Rv1027c Rv1065 Rv1095 Rv1127c Rv1845c Rv1846c Rv2005c Rv2133c Rv2164c Rv2237 Rv2365c Rv2471 Rv2551c Rv2558 Rv2675c Rv2853 Rv2925c Rv3289c Rv3757c Rv3905c | pknA mprA kdpE phoH2 ppdK aglA PE_PGRS48 rnc proW esxF | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) | hypothetical protein | PROBABLE INTEGRAL MEMBRANE PROTEIN | MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE | PROBABLE PHOH-LIKE PROTEIN PHOH2 (PHOSPHATE STARVATION-INDUCIBLE PROTEIN PSIH) | pyruvate phosphate dikinase | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE CONSERVED PROLINE RICH MEMBRANE PROTEIN | PROBABLE ALPHA-GLUCOSIDASE AGLA (MALTASE) (GLUCOINVERTASE) (GLUCOSIDOSUCRASE) (MALTASE-GLUCOAMYLASE) (LYSOSOMAL ALPHA-GLUCOSIDASE) (ACID MALTASE) | PE-PGRS FAMILY PROTEIN | ribonuclease III | POSSIBLE TRANSMEMBRANE PROTEIN | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW | PUTATIVE ESAT-6 LIKE PROTEIN ESXF (HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 13) |
| 137 | 31 | 37 | -29.100 | 0.437 | 
Residual = 0.437 |  | 
tTTcctACttCtgtgtaagAt | 
GaagTgAaCaACngA |  | ORF03092 Rv0112 Rv0118c Rv0243 Rv0247c Rv0346c Rv0407 Rv0813c Rv1005c Rv1014c Rv1015c Rv1309 Rv1310 Rv1792 Rv1836c Rv1886c Rv1892 Rv2124c Rv2245 Rv2246 Rv2247 Rv2518c Rv2697c Rv2731 Rv2994 Rv3002c Rv3086 Rv3093c Rv3139 Rv3805c Rv3838c | gca oxcA fadA2 ansP2 fgd1 pabB pth rplY atpG atpD fbpB metH kasA kasB accD6 lppS dut ilvH adhD fadE24 pheA | POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) | putative oxalyl-CoA decarboxylase | acetyl-CoA acetyltransferase | fumarate reductase iron-sulfur subunit | POSSIBLE L-ASPARAGINE PERMEASE ANSP2 (L-ASPARAGINE TRANSPORT PROTEIN) | PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1 | hypothetical protein | para-aminobenzoate synthase component I | peptidyl-tRNA hydrolase | 50S ribosomal protein L25/general stress protein Ctc | F0F1 ATP synthase subunit gamma | F0F1 ATP synthase subunit beta | SECRETED ANTIGEN 85-B FBPB (85B) (ANTIGEN 85 COMPLEX B) (MYCOLYL TRANSFERASE 85B) (FIBRONECTIN-BINDING PROTEIN B) (EXTRACELLULAR ALPHA-ANTIGEN) | PROBABLE MEMBRANE PROTEIN | Probable 5-methyltetrahydrofolate--homocystein methyltransferase MetH (Methionine synthase, vitamin-B12 dependent isozyme) (MS) | 3-oxoacyl-(acyl carrier protein) synthase II | ACETYL/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD6 | PROBABLE CONSERVED LIPOPROTEIN LPPS | deoxyuridine 5'-triphosphate nucleotidohydrolase | CONSERVED HYPOTHETICAL ALANINE AND ARGININE RICH PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | acetolactate synthase 3 regulatory subunit | PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE ADHD (ALDEHYDE REDUCTASE) | HYPOTHETICAL OXIDOREDUCTASE | PROBABLE ACYL-CoA DEHYDROGENASE FADE24 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | prephenate dehydratase |
| 138 | 14 | 35 | -47.024 | 0.335 | 
Residual = 0.335 |  | 
CgagGAaaTngATGcCgAggT | 
AAtaAcTtGtcACCA |  | Rv0013 Rv0057 Rv1202 Rv1980c Rv2068c Rv2114 Rv2144c Rv2445c Rv2950c Rv2954c Rv3102c Rv3218 Rv3623 Rv3747 | trpG dapE mpt64 blaC ndk fadD29 ftsE lpqG | para-aminobenzoate synthase component II | hypothetical protein | dipeptidase | IMMUNOGENIC PROTEIN MPT64 (ANTIGEN MPT64/MPB64) | CLASS A BETA-LACTAMASE BLAC | Probable transmembrane protein | nucleoside diphosphate kinase | acyl-CoA synthetase | PUTATIVE CELL DIVISION ATP-BINDING PROTEIN FTSE (SEPTATION COMPONENT-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER) | PROBABLE CONSERVED LIPOPROTEIN LPQG |
| 139 | 31 | 36 | -40.399 | 0.405 | 
Residual = 0.405 |  | 
CtAcAaCcaCgAaCaGctcGAGCA | 
ATCGTGAACATGCTGCACGGGGTG |  | ORF01755 ORF01756 ORFD0388 Rv0072 Rv0074 Rv0468 Rv0920c Rv0990c Rv1037c Rv1038c Rv1195 Rv1197 Rv1198 Rv1793 Rv1794 Rv2030c Rv2113 Rv2346c Rv2347c Rv2348c Rv2386c Rv2510c Rv2625c Rv3015c Rv3077 Rv3088 Rv3619c Rv3620c Rv3730c Rv3874 Rv3889c | fadB2 esxI esxJ PE13 esxK esxL esxN esxO esxP mbtI esxV esxW esxB | PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER | hypothetical protein | 3-hydroxybutyryl-CoA dehydrogenase | PROBABLE TRANSPOSASE | PUTATIVE ESAT-6 LIKE PROTEIN ESXI (ESAT-6 LIKE PROTEIN 1) | ESAT-6 LIKE PROTEIN ESXJ (ESAT-6 LIKE PROTEIN 2) | PE FAMILY PROTEIN | ESAT-6 LIKE PROTEIN ESXK (ESAT-6 LIKE PROTEIN 3) | PUTATIVE ESAT-6 LIKE PROTEIN ESXL (ESAT-6 LIKE PROTEIN 4) | PUTATIVE ESAT-6 LIKE PROTEIN ESXN (ESAT-6 LIKE PROTEIN 5) | Probable integral membrane protein | PUTATIVE ESAT-6 LIKE PROTEIN ESXO (ESAT-6 LIKE PROTEIN 6) | PUTATIVE ESAT-6 LIKE PROTEIN ESXP (ESAT-6 LIKE PROTEIN 7) | salicylate synthase MbtI | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN | POSSIBLE HYDROLASE | PUTATIVE ESAT-6 LIKE PROTEIN ESXV (ESAT-6 LIKE PROTEIN 1) | PUTATIVE ESAT-6 LIKE PROTEIN ESXW (ESAT-6 LIKE PROTEIN 10) | 10 KDA CULTURE FILTRATE ANTIGEN ESXB (LHP) (CFP10) |
| 140 | 29 | 38 | -23.561 | 0.523 | 
Residual = 0.523 |  | 
tcGCCGgTggCGtnGgAgtcgtCG | 
cGCCGAnCagA |  | ORF04174 ORF05444 ORF06111 Rv0207c Rv0262c Rv0615 Rv1027c Rv1224 Rv1239c Rv1583c Rv1627c Rv1890c Rv2115c Rv2117 Rv2130c Rv2131c Rv2471 Rv2575 Rv2653c Rv2708c Rv2751 Rv3093c Rv3519 Rv3691 Rv3707c Rv3802c Rv3871 Rv3880c Rv3881c | aac kdpE tatB corA cysS cysQ aglA | hypothetical protein | AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE AAC (AAC(2')-IC) | PROBABLE INTEGRAL MEMBRANE PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE | sec-independent translocase | POSSIBLE MAGNESIUM AND COBALT TRANSPORT TRANSMEMBRANE PROTEIN CORA | Probable phiRv1 phage protein | lipid-transfer protein | Probable ATPase | cysteinyl-tRNA synthetase | POSSIBLE MONOPHOSPHATASE CYSQ | PROBABLE ALPHA-GLUCOSIDASE AGLA (MALTASE) (GLUCOINVERTASE) (GLUCOSIDOSUCRASE) (MALTASE-GLUCOAMYLASE) (LYSOSOMAL ALPHA-GLUCOSIDASE) (ACID MALTASE) | POSSIBLE CONSERVED MEMBRANE GLYCINE RICH PROTEIN | POSSIBLE phiRv2 PROPHAGE PROTEIN | HYPOTHETICAL OXIDOREDUCTASE | PROBABLE CONSERVED MEMBRANE PROTEIN | CONSERVED HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN |
| 141 | 25 | 37 | -21.271 | 0.487 | 
Residual = 0.487 |  | 
ggTCGcGgTgA | 
GACAACGcGA |  | ORF187_in_recF_region ORFD0293 ORFD0302 Rv0408 Rv0409 Rv0440 Rv0468 Rv1347c Rv1703c Rv1704c Rv1947 Rv2076c Rv2208 Rv2403c Rv2460c Rv2461c Rv2571c Rv2725c Rv2794c Rv3101c Rv3418c Rv3586 Rv3592 Rv3684 Rv3774 | pta ackA groEL fadB2 cycA cobS lppR clpP2 clpP hflX ftsX groES TB11.2 echA21 | phosphate acetyltransferase | acetate kinase | chaperonin GroEL | 3-hydroxybutyryl-CoA dehydrogenase | hypothetical protein | Probable catechol-o-methyltransferase | PROBABLE D-SERINE/ALANINE/GLYCINE TRANSPORTER PROTEIN CYCA | cobalamin synthase | PROBABLE CONSERVED LIPOPROTEIN LPPR | ATP-dependent Clp protease proteolytic subunit | PROBABLE TRANSMEMBRANE ALANINE AND VALINE AND LEUCINE RICH PROTEIN | PROBABLE GTP-BINDING PROTEIN HFLX | PUTATIVE CELL DIVISION PROTEIN FTSX (SEPTATION COMPONENT-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER) | co-chaperonin GroES | PROBABLE LYASE | enoyl-CoA hydratase |
| 142 | 28 | 38 | -32.168 | 0.390 | 
Residual = 0.390 |  | 
AACAAaCG | 
ATTAAA |  | ORF04548 ORF04687 Rv0474 Rv0638 Rv0639 Rv0641 Rv0680c Rv1031 Rv1093 Rv1285 Rv1441c Rv1644 Rv1806 Rv1807 Rv1875 Rv1878 Rv2122c Rv2255c Rv2332 Rv2465c Rv2699c Rv2741 Rv2904c Rv3135 Rv3357 Rv3597c Rv3903c Rv3913 | secE nusG rplA kdpC glyA cysD PE_PGRS26 tsnR PE20 PPE31 glnA3 hisE mez PE_PGRS47 rplS PPE50 lsr2 trxB2 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | preprotein translocase subunit SecE | transcription antitermination protein NusG | 50S ribosomal protein L1 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | Probable Potassium-transporting ATPase C chain KDPC (Potassium-translocating ATPase C chain) (ATP phosphohydrolase [potassium-transporting] C chain) (Potassium binding and translocating subunit C) | serine hydroxymethyltransferase | sulfate adenylyltransferase subunit 2 | PE-PGRS FAMILY PROTEIN | Possible 23S rRNA methyltransferase tsnR | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | hypothetical protein | PROBABLE GLUTAMINE SYNTHETASE GLNA3 (GLUTAMINE SYNTHASE) (GS-I) | phosphoribosyl-ATP pyrophosphatase | PROBABLE [NAD] DEPENDENT MALATE OXIDOREDUCTASE MEZ (MALIC ENZYME) (NAD-MALIC ENZYME) (MALATE DEHYDROGENASE (OXALOACETATE DECARBOXYLATING)) (PYRUVIC-MALIC CARBOXYLASE) (NAD-ME) | ribose-5-phosphate isomerase B | 50S ribosomal protein L19 | PROBABLE IRON-REGULATED LSR2 PROTEIN PRECURSOR | HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN | PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR) |
| 143 | 29 | 40 | -37.390 | 0.413 | 
Residual = 0.413 |  | 
tggTCnCGnTTtngTnaCacC | 
TtcGgAaTATgTGcG |  | Rv0040c Rv0063 Rv0129c Rv0312 Rv0883c Rv0994 Rv1157c Rv1158c Rv1435c Rv1469 Rv1477 Rv1690 Rv1697 Rv1698 Rv1987 Rv2145c Rv2350c Rv2351c Rv2525c Rv2721c Rv3246c Rv3258c Rv3260c Rv3310 Rv3413c Rv3414c Rv3717 Rv3810 Rv3812 | mtc28 fbpC moeA1 ctpD lprJ wag31 plcB plcA mtrA whiB2 ACID PHOSPHOMONOESTERASE sigD pirG PE_PGRS62 | SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) | POSSIBLE OXIDOREDUCTASE | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) | CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN | hypothetical protein | PROBABLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA1 | CONSERVED HYPOTHETICAL ALA-, PRO-RICH PROTEIN | Probable conserved Proline, Glycine, Valine-rich secreted protein | PROBABLE CATION TRANSPORTER P-TYPE ATPASE D CTPD | HYPOTHETICAL INVASION PROTEIN | PROBABLE LIPOPROTEIN LPRJ | POSSIBLE CHITINASE | CONSERVED HYPOTHETICAL PROTEIN WAG31 | PROBABLE MEMBRANE-ASSOCIATED PHOSPHOLIPASE C 2 PLCB | PROBABLE MEMBRANE-ASSOCIATED PHOSPHOLIPASE C 1 PLCA (MTP40 ANTIGEN) | POSSIBLE CONSERVED TRANSMEMBRANE ALANINE AND GLYCINE RICH PROTEIN | TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY PROTEIN MTRA | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB2 | POSSIBLE ACID PHOSPHATASE (ACID PHOSPHOMONOESTERASE) (PHOSPHOMONOESTERASE) (GLYCEROPHOSPHATASE) | HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN | RNA polymerase sigma factor SigD | EXPORTED REPETITIVE PROTEIN PRECURSOR PIRG (CELL SURFACE PROTEIN) (EXP53) | PE-PGRS FAMILY PROTEIN |
| 144 | 26 | 36 | -47.305 | 0.287 | 
Residual = 0.287 |  | 
AnCaGaTT | 
AATTTCGA |  | ORF03128 ORFD0043 Rv0237 Rv0249c Rv0404 Rv0429c Rv0433 Rv0554 Rv0642c Rv0643c Rv0651 Rv0700 Rv0701 Rv0714 Rv0715 Rv0718 Rv0732 Rv0947c Rv1111c Rv1201c Rv1630 Rv1980c Rv2190c Rv2289 Rv3443c Rv3623 | lpqI SUCCINIC DEHYDROGENASE fadD30 def bpoC mmaA4 mmaA3 rplJ rpsJ rplC rplN rplX rpsH secY rpsA mpt64 cdh rplM lpqG | PROBABLE CONSERVED LIPOPROTEIN LPQI | PROBABLE SUCCINATE DEHYDROGENASE [MEMBRANE ANCHOR SUBUNIT] (SUCCINIC DEHYDROGENASE) | acyl-CoA synthetase | peptide deformylase | hypothetical protein | POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE) | METHOXY MYCOLIC ACID SYNTHASE 4 MMAA4 (METHYL MYCOLIC ACID SYNTHASE 4) (MMA4) (HYDROXY MYCOLIC ACID SYNTHASE) | METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) | 50S ribosomal protein L10 | 30S ribosomal protein S10 | 50S ribosomal protein L3 | 50S ribosomal protein L14 | 50S ribosomal protein L24 | 30S ribosomal protein S8 | preprotein translocase subunit SecY | PROBABLE TRANSFERASE | 30S ribosomal protein S1 | IMMUNOGENIC PROTEIN MPT64 (ANTIGEN MPT64/MPB64) | CDP-diacylglycerol pyrophosphatase | 50S ribosomal protein L13 | PROBABLE CONSERVED LIPOPROTEIN LPQG |
| 145 | 11 | 37 | -83.493 | 0.217 | 
Residual = 0.217 |  | 
GAaccGAGtTTgAGgcgAG | 
ttgtCGACaAgCA |  | Rv0682 Rv0683 Rv0714 Rv0715 Rv0718 Rv0723 Rv1111c Rv2462c Rv3442c Rv3443c Rv3804c | rpsL rpsG rplN rplX rpsH rplO tig rpsI rplM fbpA | 30S ribosomal protein S12 | 30S ribosomal protein S7 | 50S ribosomal protein L14 | 50S ribosomal protein L24 | 30S ribosomal protein S8 | 50S ribosomal protein L15 | hypothetical protein | trigger factor | 30S ribosomal protein S9 | 50S ribosomal protein L13 | SECRETED ANTIGEN 85-A FBPA (MYCOLYL TRANSFERASE 85A) (FIBRONECTIN-BINDING PROTEIN A) (ANTIGEN 85 COMPLEX A) |
| 146 | 42 | 37 | -21.873 | 0.519 | 
Residual = 0.519 |  | 
ATAtnGTtGncTTCTGAcAnA | 
TCTAAATAATCAATGTCGACGAT |  | ORF03736.2 ORF06006 ORF06096 Rv0163 Rv0244c Rv0336 Rv0341 Rv0382c Rv0412c Rv0686 Rv0688 Rv0747 Rv0752c Rv0921 Rv0996 Rv1219c Rv1403c Rv1404 Rv1405c Rv1441c Rv1654 Rv1685c Rv1957 Rv2249c Rv2324 Rv2386c Rv2430c Rv2620c Rv2719c Rv2780 Rv2809 Rv2837c Rv2838c Rv2930 Rv2931 Rv2933 Rv2935 Rv3027c Rv3189 Rv3238c Rv3585 Rv3710 | fadE5 iniB pyrE PE_PGRS10 fadE9 PE_PGRS26 argB glpD1 PROBABLY ASNC-FAMILY mbtI PPE41 ald rbfA fadD26 ppsA ppsC ppsE radA leuA | hypothetical protein | PROBABLE ACYL-CoA DEHYDROGENASE FADE5 | CONSERVED 13E12 REPEAT FAMILY PROTEIN | ISONIAZID INDUCTIBLE GENE PROTEIN INIB | orotate phosphoribosyltransferase | POSSIBLE CONSERVED MEMBRANE PROTEIN | PROBABLE MEMBRANE PROTEIN | PUTATIVE FERREDOXIN REDUCTASE | PE-PGRS FAMILY PROTEIN | PROBABLE ACYL-CoA DEHYDROGENASE FADE9 | POSSIBLE RESOLVASE | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PUTATIVE METHYLTRANSFERASE | acetylglutamate kinase | PROBABLE GLYCEROL-3-PHOSPHATE DEHYDROGENASE GLPD1 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) | salicylate synthase MbtI | PPE FAMILY PROTEIN | SECRETED L-ALANINE DEHYDROGENASE ALD (40 KDA ANTIGEN) (TB43) | ribosome-binding factor A | acyl-CoA synthetase | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSA | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSC | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSE | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | DNA repair protein RadA | 2-isopropylmalate synthase |
| 147 | 26 | 39 | -27.957 | 0.436 | 
Residual = 0.436 |  | 
CTGGAtgtGtgt | 
CcGTCgATCGAtcGA |  | Rv0014c Rv0220 Rv0222 Rv0444c Rv0760c Rv0896 Rv1070c Rv1133c Rv1232c Rv1233c Rv1304 Rv1305 Rv1307 Rv1437 Rv1438 Rv2074 Rv2197c Rv2214c Rv2216 Rv2883c Rv3146 Rv3148 Rv3150 Rv3264c Rv3305c Rv3708c | pknB lipC echA1 gltA echA8 metE atpB atpE atpH pgk tpiA ephD pyrH nuoB nuoD nuoF manB amiA1 asd | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) | PROBABLE ESTERASE LIPC | enoyl-CoA hydratase | hypothetical protein | type II citrate synthase | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | F0F1 ATP synthase subunit A | F0F1 ATP synthase subunit C | PROBABLE ATP SYNTHASE DELTA CHAIN ATPH | phosphoglycerate kinase | triosephosphate isomerase | Probable conserved transmembrane protein | short chain dehydrogenase | uridylate kinase | NADH dehydrogenase subunit B | NADH dehydrogenase subunit D | PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN F) | D-ALPHA-D-MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE MANB (D-ALPHA-D-HEPTOSE-1-PHOSPHATE GUANYLYLTRANSFERASE) | POSSIBLE N-ACYL-L-AMINO ACID AMIDOHYDROLASE AMIA1 (N-ACYL-L-AMINO ACID AMINOHYDROLASE) | aspartate-semialdehyde dehydrogenase |
| 148 | 26 | 36 | -25.451 | 0.478 | 
Residual = 0.478 |  | 
aCGAAAAgCCAgCCtAaCt | 
ccgcCGacGGCanccnGGncAAC |  | ORFD0024 Rv0005 Rv0066c Rv0421c Rv0424c Rv0425c Rv0530 Rv0542c Rv1217c Rv1274 Rv1700 Rv2097c Rv2345 Rv2392 Rv2393 Rv2454c Rv2868c Rv2931 Rv2941 Rv3285 Rv3315c Rv3407 Rv3408 Rv3813c Rv3814c Rv3816c | gyrB icd2 ctpH menE lprB cysH ispG ppsA fadD28 accA3 cdd | DNA gyrase subunit B | PROBABLE ISOCITRATE DEHYDROGENASE [NADP] ICD2 (OXALOSUCCINATE DECARBOXYLASE) (IDH) (NADP+-SPECIFIC ICDH) (IDP) | hypothetical protein | POSSIBLE METAL CATION TRANSPORTING P-TYPE ATPASE CTPH | O-succinylbenzoic acid--CoA ligase | PROBABLE TETRONASIN-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | POSSIBLE LIPOPROTEIN LPRB | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | phosphoadenosine phosphosulfate reductase | 2-oxoglutarate ferredoxin oxidoreductase subunit beta | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSA | acyl-CoA synthetase | PROBABLE BIFUNCTIONAL PROTEIN ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE (ALPHA CHAIN) ACCA3: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) | cytidine deaminase | POSSIBLE ACYLTRANSFERASE |
| 149 | 33 | 36 | -31.837 | 0.417 | 
Residual = 0.417 |  | 
AcAaattgACtTgTAaAnAc | 
TGaGCAAtGcAgtaagTT |  | Rv0135c Rv0140 Rv0211 Rv0244c Rv0467 Rv0581 Rv0788 Rv0792c Rv0814c Rv0815c Rv0870c Rv0898c Rv0920c Rv1180 Rv1222 Rv1265 Rv1355c Rv1760 Rv1909c Rv1939 Rv2621c Rv2622 Rv2641 Rv2642 Rv2825c Rv2961 Rv3249c Rv3251c Rv3269 Rv3270 Rv3548c Rv3742c Rv3749c | pckA fadE5 icl purQ PROBABLY GNTR-FAMILY sseC2 cysA2 pks3 moeY furA METHYLASE cadI PROBABLY ARSR-FAMILY PROBABLY TETR-FAMILY rubA ctpC | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | hypothetical protein | phosphoenolpyruvate carboxykinase | PROBABLE ACYL-CoA DEHYDROGENASE FADE5 | isocitrate lyase | phosphoribosylformylglycinamidine synthase subunit I | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) | CONSERVED HYPOTHETICAL PROTEIN SSEC2 | PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA2 (RHODANESE-LIKE PROTEIN) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) | PROBABLE TRANSPOSASE | PROBABLE POLYKETIDE BETA-KETOACYL SYNTHASE PKS3 | FERRIC UPTAKE REGULATION PROTEIN FURA (FUR) | PROBABLE OXIDOREDUCTASE | POSSIBLE METHYLTRANSFERASE (METHYLASE) | CADMIUM INDUCIBLE PROTEIN CADI | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | PROBABLE RUBREDOXIN RUBA | PROBABLE METAL CATION-TRANSPORTING P-TYPE ATPASE C CTPC | short chain dehydrogenase | POSSIBLE OXIDOREDUCTASE |
| 150 | 21 | 39 | -29.163 | 0.438 | 
Residual = 0.438 |  | 
TgaacataCCGATTT | 
cgcaGATCAACctCa |  | Rv0103c Rv0200 Rv0444c Rv0526 Rv0527 Rv0533c Rv0558 Rv1007c Rv1230c Rv1233c Rv1427c Rv1484 Rv1547 Rv1689 Rv1708 Rv2216 Rv3417c Rv3418c Rv3631 Rv3725 Rv3795 | ctpB THIOL-DISULFIDE INTERCHANGE PROTEIN ccdA fabH ubiE metG fadD12 inhA dnaE tyrS groEL groES POSSIBLY GLYCOSYLTRANSFERASE embB | PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | hypothetical protein | POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) | POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA | 3-oxoacyl-(acyl carrier protein) synthase III | ubiquinone/menaquinone biosynthesis methyltransferase | methionyl-tRNA synthetase | POSSIBLE MEMBRANE PROTEIN | acyl-CoA synthetase | enoyl-(acyl carrier protein) reductase | DNA polymerase III subunit alpha | tyrosyl-tRNA synthetase | PUTATIVE INITIATION INHIBITOR PROTEIN | chaperonin GroEL | co-chaperonin GroES | POSSIBLE TRANSFERASE (POSSIBLY GLYCOSYLTRANSFERASE) | POSSIBLE OXIDOREDUCTASE | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBB (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) |
| 151 | 23 | 37 | -30.120 | 0.478 | 
Residual = 0.478 |  | 
CgCCgCGCTnGCGATCgCna | 
tTgGcGGcGACCcGCtGCGCCCGG |  | Rv0265c Rv0407 Rv0408 Rv0409 Rv1007c Rv1274 Rv1466 Rv1708 Rv1925 Rv2197c Rv2199c Rv2228c Rv2242 Rv2448c Rv2457c Rv2496c Rv2509 Rv2674 Rv2846c Rv2869c Rv3042c Rv3699 Rv3708c | fgd1 pta ackA metG lprB fadD31 valS clpX pdhB efpA serB2 asd | PROBABLE PERIPLASMIC IRON-TRANSPORT LIPOPROTEIN | PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1 | phosphate acetyltransferase | acetate kinase | methionyl-tRNA synthetase | POSSIBLE LIPOPROTEIN LPRB | hypothetical protein | PUTATIVE INITIATION INHIBITOR PROTEIN | acyl-CoA synthetase | Probable conserved transmembrane protein | Possible conserved integral membrane protein | valyl-tRNA synthetase | ATP-dependent protease ATP-binding subunit | PROBABLE PYRUVATE DEHYDROGENASE E1 COMPONENT (BETA SUBUNIT) PDHB (PYRUVATE DECARBOXYLASE) (PYRUVATE DEHYDROGENASE) (PYRUVIC DEHYDROGENASE) | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE | POSSIBLE INTEGRAL MEMBRANE EFFLUX PROTEIN EFPA | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | phosphoserine phosphatase | aspartate-semialdehyde dehydrogenase |
| 152 | 33 | 36 | -38.840 | 0.356 | 
Residual = 0.356 |  | 
TtAacTCAggtagtgATaaTTAaC | 
antCGacAACACtCG |  | ORF03148 Rv0163 Rv0230c Rv0559c Rv0560c Rv0754 Rv0806c Rv0846c Rv0948c Rv1222 Rv1540 Rv1576c Rv1585c Rv1586c Rv1599 Rv1622c Rv1639c Rv1686c Rv1687c Rv1830 Rv1882c Rv1982c Rv2158c Rv2499c Rv2503c Rv2590 Rv2602 Rv2650c Rv2677c Rv2963 Rv3046c Rv3049c Rv3563 | php METHYLASE PE_PGRS11 cpsY hisD cydB murE scoB fadD9 hemY fadE32 | hypothetical protein | PROBABLE PHOSPHOTRIESTERASE PHP (PARATHION HYDROLASE) (PTE) (ARYLDIALKYLPHOSPHATASE) (PARAOXONASE) (A-ESTERASE) (ARYLTRIPHOSPHATASE) (PARAOXON HYDROLASE) | POSSIBLE CONSERVED SECRETED PROTEIN | POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) | PE-PGRS FAMILY PROTEIN | POSSIBLE UDP-GLUCOSE-4-EPIMERASE CPSY (GALACTOWALDENASE) (UDP-GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE-4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE-4-EPIMERASE) | PROBABLE OXIDASE | CONSERVED HYPOTHETICAL PROTEIN MEMBER OF yabO/yceC/yfiI FAMILY | Probable phiRV1 phage protein | Possible phage phiRv1 protein | Probable phiRv1 integrase | histidinol dehydrogenase | Probable integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (Cytochrome BD-I oxidase subunit II) | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | short chain dehydrogenase | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | PROBABLE SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE (BETA SUBUNIT) SCOB (3-OXO-ACID:COA TRANSFERASE) (OXCT B) (SUCCINYL CoA:3-OXOACID CoA-TRANSFERASE) | PROBABLE FATTY-ACID-CoA LIGASE FADD9 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) | POSSIBLE phiRv2 PROPHAGE PROTEIN | protoporphyrinogen oxidase | PROBABLE INTEGRAL MEMBRANE PROTEIN | PROBABLE MONOOXYGENASE | PROBABLE ACYL-CoA DEHYDROGENASE FADE32 |
| 153 | 14 | 35 | -62.357 | 0.290 | 
Residual = 0.290 |  | 
TAcaaaTCaGcActTGatGTtAG | 
CAACGCGG |  | Rv0274 Rv1063c Rv1463 Rv1995 Rv2340c Rv2495c Rv2497c Rv2498c Rv2499c Rv2500c Rv2501c Rv2503c Rv2504c Rv3010c | PE_PGRS39 pdhC pdhA citE fadE19 accA1 scoB scoA pfkA | hypothetical protein | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | PE-PGRS FAMILY PROTEIN | branched-chain alpha-keto acid dehydrogenase subunit E2 | PROBABLE PYRUVATE DEHYDROGENASE E1 COMPONENT (ALPHA SUBUNIT) PDHA (PYRUVATE DECARBOXYLASE) (PYRUVATE DEHYDROGENASE) (PYRUVIC DEHYDROGENASE) | PROBABLE CITRATE (PRO-3S)-LYASE (BETA SUBUNIT) CITE (CITRASE) (CITRATASE) (CITRITASE) (CITRIDESMOLASE) (CITRASE ALDOLASE) | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | POSSIBLE ACYL-CoA DEHYDROGENASE FADE19 (MMGC) | PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) | PROBABLE SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE (BETA SUBUNIT) SCOB (3-OXO-ACID:COA TRANSFERASE) (OXCT B) (SUCCINYL CoA:3-OXOACID CoA-TRANSFERASE) | PROBABLE SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE (ALPHA SUBUNIT) SCOA (3-OXO ACID:CoA TRANSFERASE) (OXCT A) (SUCCINYL-COA:3-OXOACID-COENZYME A TRANSFERASE) | 6-phosphofructokinase |
| 154 | 27 | 37 | -36.120 | 0.383 | 
Residual = 0.383 |  | 
AGCatAtcgAAcaAttGttCGGAA | 
AaTTTagCATCgCaggtTCC |  | ORF00796 Rv0015c Rv0366c Rv1390 Rv1433 Rv1479 Rv1557 Rv1576c Rv1577c Rv1583c Rv1655 Rv2153c Rv2471 Rv2499c Rv2537c Rv2594c Rv2596 Rv2651c Rv2749 Rv2751 Rv2752c Rv3245c Rv3370c Rv3419c Rv3421c Rv3422c Rv3871 | pknA rpoZ moxR1 mmpL6 argD murG aglA aroD ruvC mtrB dnaE2 gcp | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) | hypothetical protein | DNA-directed RNA polymerase subunit omega | POSSIBLE CONSERVED EXPORTED PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN MOXR1 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL6 | Probable phiRV1 phage protein | Probable phiRv1 phage protein | acetylornithine aminotransferase | N-acetylglucosaminyl transferase | PROBABLE ALPHA-GLUCOSIDASE AGLA (MALTASE) (GLUCOINVERTASE) (GLUCOSIDOSUCRASE) (MALTASE-GLUCOAMYLASE) (LYSOSOMAL ALPHA-GLUCOSIDASE) (ACID MALTASE) | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | 3-dehydroquinate dehydratase | Holliday junction resolvase | POSSIBLE phiRv2 PROPHAGE PROTEASE | TWO COMPONENT SENSORY TRANSDUCTION HISTIDINE KINASE MTRB | error-prone DNA polymerase | O-sialoglycoprotein endopeptidase |
| 155 | 30 | 38 | -22.577 | 0.558 | 
Residual = 0.558 |  | 
TGcGaCGtcGCtACgGgTgAA | 
AGAACAATGTCGACATCGACTGA |  | ORF03049 Rv0262c Rv0271c Rv0313 Rv0443 Rv0467 Rv1126c Rv1135c Rv1142c Rv1152 Rv1156 Rv1344 Rv1479 Rv1480 Rv1790 Rv1791 Rv1794 Rv2077c Rv2280 Rv2358 Rv2576c Rv2724c Rv3075c Rv3077 Rv3083 Rv3084 Rv3085 Rv3086 Rv3088 Rv3841 | aac fadE6 icl PPE16 echA10 moxR1 PPE27 PE19 PROBABLY ARSR-FAMILY fadE20 HYDROXYLASE lipR adhD bfrB | AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE AAC (AAC(2')-IC) | PROBABLE ACYL-CoA DEHYDROGENASE FADE6 | hypothetical protein | isocitrate lyase | PPE FAMILY PROTEIN | enoyl-CoA hydratase | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | acyl carrier protein | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN MOXR1 | PE FAMILY PROTEIN | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN | Probable dehydrogenase | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) | POSSIBLE CONSERVED MEMBRANE PROTEIN | PROBABLE ACYL-CoA DEHYDROGENASE FADE20 | POSSIBLE HYDROLASE | PROBABLE MONOOXYGENASE (HYDROXYLASE) | PROBABLE ACETYL-HYDROLASE/ESTERASE LIPR | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE | PROBABLE ZINC-TYPE ALCOHOL DEHYDROGENASE ADHD (ALDEHYDE REDUCTASE) | POSSIBLE BACTERIOFERRITIN BFRB |
| 156 | 20 | 38 | -32.903 | 0.414 | 
Residual = 0.414 |  | 
AcgCCGACgACaTCA | 
ATTACcTAA |  | Rv0314c Rv0482 Rv0506 Rv0760c Rv0867c Rv1172c Rv1545 Rv1650 Rv1860 Rv2076c Rv2357c Rv2403c Rv2430c Rv2763c Rv2836c Rv2940c Rv3234c Rv3579c Rv3580c Rv3794 | murB mmpS2 rpfA PE12 pheT apa glyS lppR PPE41 dfrA dinF mas cysS embA | POSSIBLE CONSERVED MEMBRANE PROTEIN | UDP-N-acetylenolpyruvoylglucosamine reductase | PROBABLE CONSERVED MEMBRANE PROTEIN MMPS2 | hypothetical protein | POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA | PE FAMILY PROTEIN | phenylalanyl-tRNA synthetase subunit beta | ALANINE AND PROLINE RICH SECRETED PROTEIN APA (FIBRONECTIN ATTACHMENT PROTEIN) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (45/47 kDa antigen) | glycyl-tRNA synthetase | PROBABLE CONSERVED LIPOPROTEIN LPPR | PPE FAMILY PROTEIN | DIHYDROFOLATE REDUCTASE DFRA (DHFR) (TETRAHYDROFOLATE DEHYDROGENASE) | POSSIBLE DNA-DAMAGE-INDUCIBLE PROTEIN F DINF | PROBABLE MULTIFUNCTIONAL MYCOCEROSIC ACID SYNTHASE MEMBRANE-ASSOCIATED MAS | POSSIBLE TRNA/RRNA METHYLTRANSFERASE | cysteinyl-tRNA synthetase | INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBA (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE) |
| 157 | 25 | 39 | -34.065 | 0.419 | 
Residual = 0.419 |  | 
tGCAcAgCcgCTTAGaAcTAAAGa | 
AAaCnGnAaTAGAGC |  | ORF00615 ORF05336 ORF05469 Rv0455c Rv1182 Rv1185c Rv1270c Rv1368 Rv2220 Rv2376c Rv2633c Rv2715 Rv3390 Rv3497c Rv3613c Rv3614c Rv3615c Rv3616c Rv3633 Rv3763 Rv3822 Rv3824c Rv3825c Rv3826 Rv3849 | papA3 fadD21 lprA lprF glnA1 cfp2 lpqD mce4C lpqH papA1 pks2 fadD23 | hypothetical protein | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA3 | acyl-CoA synthetase | POSSIBLE LIPOPROTEIN LPRA | PROBABLE CONSERVED LIPOPROTEIN LPRF | GLUTAMINE SYNTHETASE GLNA1 (GLUTAMINE SYNTHASE) (GS-I) | LOW MOLECULAR WEIGHT ANTIGEN CFP2 (LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 2) (CFP-2) | POSSIBLE HYDROLASE | PROBABLE CONSERVED LIPOPROTEIN LPQD | MCE-FAMILY PROTEIN MCE4C | CONSERVED HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN | 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA1 | PROBABLE POLYKETIDE SYNTHASE PKS2 |
| 158 | 31 | 38 | -23.632 | 0.601 | 
Residual = 0.601 |  | 
TTAgngcanCCtAtGntnaC | 
GccTACCaAcgacATtGAg |  | ORF08109 ORF187_in_recF_region Rv0028 Rv0201c Rv0282 Rv0283 Rv0284 Rv0285 Rv0286 Rv0333 Rv0664 Rv0790c Rv0791c Rv0815c Rv0997 Rv1396c Rv1810 Rv2110c Rv2380c Rv2382c Rv2383c Rv2392 Rv2393 Rv2686c Rv2743c Rv2744c Rv3075c Rv3095 Rv3616c Rv3707c Rv3837c | PE5 PPE4 cysA2 PE_PGRS25 prcB mbtE mbtC mbtB cysH 35kd_ag PHOSPHOGLYCEROMUTASE | hypothetical protein | POSSIBLE CONSERVED MEMBRANE PROTEIN | PE FAMILY PROTEIN | PPE FAMILY PROTEIN | PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA2 (RHODANESE-LIKE PROTEIN) (THIOSULFATE CYANIDE TRANSSULFURASE) (THIOSULFATE THIOTRANSFERASE) | PE-PGRS FAMILY PROTEIN | proteasome (beta subunit) PrcB | PEPTIDE SYNTHETASE MBTE (PEPTIDE SYNTHASE) | POLYKETIDE SYNTHETASE MBTC (POLYKETIDE SYNTHASE) | PHENYLOXAZOLINE SYNTHASE MBTB (PHENYLOXAZOLINE SYNTHETASE) | phosphoadenosine phosphosulfate reductase | PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND ALANINE AND VALINE RICH PROTEIN ABC TRANSPORTER | POSSIBLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN | CONSERVED 35 KDA ALANINE RICH PROTEIN | HYPOTHETICAL TRANSCRIPTIONAL REGULATORY PROTEIN | CONSERVED HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN | PROBABLE PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCEROMUTASE) (PHOSPHOGLYCERATE PHOSPHOMUTASE) |
| 159 | 24 | 37 | -31.452 | 0.380 | 
Residual = 0.380 |  | 
tAAnTcTTtanttAgAtnaGnaTT | 
ACCGTcAcgCtgCcGcTaC |  | ORF01176 ORF06092 Rv0047c Rv0179c Rv0263c Rv0264c Rv0516c Rv1013 Rv1187 Rv1462 Rv1522c Rv1646 Rv1665 Rv1687c Rv1888c Rv1986 Rv2022c Rv2136c Rv2487c Rv2784c Rv2832c Rv3049c Rv3160c Rv3450c | lprO pks16 rocA mmpL12 PE17 pks11 uppP PE_PGRS42 lppU ugpC PROBABLY TETR-FAMILY | hypothetical protein | POSSIBLE LIPOPROTEIN LPRO | acyl-CoA synthetase | PROBABLE PYRROLINE-5-CARBOXYLATE DEHYDROGENASE ROCA | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL12 | PE FAMILY PROTEIN | Possible chalcone synthase pks11 | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | POSSIBLE TRANSMEMBRANE PROTEIN | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN | undecaprenyl pyrophosphate phosphatase | PE-PGRS FAMILY PROTEIN | PROBABLE LIPOPROTEIN LPPU | PROBABLE Sn-GLYCEROL-3-PHOSPHATE TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER UGPC | PROBABLE MONOOXYGENASE | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) | PROBABLE CONSERVED MEMBRANE PROTEIN |
| 160 | 15 | 37 | -54.722 | 0.279 | 
Residual = 0.279 |  | 
AcanAACngaaccTgtTngTagat | 
CGTCGtGAAGT |  | ORF02159 Rv0064 Rv0274 Rv1670 Rv1672c Rv1894c Rv1990c Rv2602 Rv2659c Rv3287c Rv3288c Rv3290c Rv3502c Rv3503c Rv3574 | rsbW usfY lat fabG fdxD PROBABLY TETR-FAMILY | hypothetical protein | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN | PROBABLE phiRv2 PROPHAGE INTEGRASE | ANTI-SIGMA FACTOR RSBW (SIGMA NEGATIVE EFFECTOR) | PUTATIVE PROTEIN USFY | L-lysine aminotransferase | 3-ketoacyl-(acyl-carrier-protein) reductase | PROBABLE FERREDOXIN FDXD | TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| 161 | 23 | 37 | -41.888 | 0.359 | 
Residual = 0.359 |  | 
TCAGacccTGcTgCgAtgATgA | 
ATCtcTtTGcGgGGtGAtGACGgC |  | Rv0270 Rv0272c Rv0273c Rv0441c Rv0938 Rv1765c Rv2015c Rv2340c Rv2373c Rv2498c Rv2516c Rv2517c Rv2539c Rv2634c Rv2650c Rv2651c Rv2925c Rv3182 Rv3606c Rv3607c Rv3610c Rv3627c Rv3870 | fadD2 PE_PGRS39 dnaJ2 citE aroK PE_PGRS46 rnc folK folB ftsH | acyl-CoA synthetase | hypothetical protein | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN | ATP-dependent DNA ligase | PE-PGRS FAMILY PROTEIN | PROBABLE CHAPERONE PROTEIN DNAJ2 | PROBABLE CITRATE (PRO-3S)-LYASE (BETA SUBUNIT) CITE (CITRASE) (CITRATASE) (CITRITASE) (CITRIDESMOLASE) (CITRASE ALDOLASE) | shikimate kinase | POSSIBLE phiRv2 PROPHAGE PROTEIN | POSSIBLE phiRv2 PROPHAGE PROTEASE | ribonuclease III | 2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDI NE PYROPHOSPHOKINASE FOLK (7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE) (HPPK) (6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE) (PPPK) (2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE DIPHOSPHOKINASE) (7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN-DIPHOSPHOKINASE) (6-HYDROXYMETHYL-7,8-DIHYDROPTERIN DIPHOSPHOKINASE) | PROBABLE DIHYDRONEOPTERIN ALDOLASE FOLB (DHNA) | MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| 162 | 15 | 36 | -45.321 | 0.344 | 
Residual = 0.344 |  | 
TcTaCGcgGCGtanTtcgtGA | 
aGAAcCTGaCCGcTGG |  | Rv0001 Rv0176 Rv0482 Rv0685 Rv0732 Rv1612 Rv2066 Rv2200c Rv2271 Rv2272 Rv2844 Rv2947c Rv2949c Rv3584 Rv3721c | dnaA murB tuf secY trpB cobI ctaC pks15 lpqE dnaZX | chromosomal replication initiation protein | PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN | UDP-N-acetylenolpyruvoylglucosamine reductase | elongation factor Tu | preprotein translocase subunit SecY | tryptophan synthase subunit beta | Probable bifunctional protein, CobI-CobJ fusion protein: S-adenosyl-L-methionine-precorrin-2 methyl transferase + precorrin-3 methylase | PROBABLE TRANSMEMBRANE CYTOCHROME C OXIDASE (SUBUNIT II) CTAC | hypothetical protein | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN | PROBABLE POLYKETIDE SYNTHASE PKS15 | POSSIBLE CONSERVED LIPOPROTEIN LPQE | DNA polymerase III subunits gamma and tau |
| 163 | 25 | 41 | -27.217 | 0.495 | 
Residual = 0.495 |  | 
GTCGAgAtTcA | 
AAnGTtaGCAA |  | ORF03148 Rv0208c Rv0233 Rv0937c Rv1179c Rv1208 Rv1363c Rv1640c Rv1793 Rv2135c Rv2494 Rv2499c Rv2590 Rv2895c Rv3041c Rv3046c Rv3087 Rv3089 Rv3197 Rv3241c Rv3433c Rv3561 Rv3563 Rv3689 Rv3825c | trmB nrdB lysS esxN fadD9 viuB fadD13 fadD3 fadE32 pks2 | tRNA (guanine-N(7))-methyltransferase | ribonucleotide-diphosphate reductase subunit beta | hypothetical protein | POSSIBLE MEMBRANE PROTEIN | lysyl-tRNA synthetase | PUTATIVE ESAT-6 LIKE PROTEIN ESXN (ESAT-6 LIKE PROTEIN 5) | POSSIBLE OXIDASE REGULATORY-RELATED PROTEIN | PROBABLE FATTY-ACID-CoA LIGASE FADD9 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) | POSSIBLE MYCOBACTIN UTILIZATION PROTEIN VIUB | PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER | PROBABLE CHAIN-FATTY-ACID-CoA LIGASE FADD13 (FATTY-ACYL-CoA SYNTHETASE) | acyl-CoA synthetase | PROBABLE ACYL-CoA DEHYDROGENASE FADE32 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN | PROBABLE POLYKETIDE SYNTHASE PKS2 |
| 164 | 6 | 35 | -79.663 | 0.165 | 
Residual = 0.165 |  | 
TTttTGnTGA | 
aTCtACA |  | Rv0635 Rv0700 Rv0701 Rv0714 Rv0715 Rv0716 | rpsJ rplC rplN rplX rplE | hypothetical protein | 30S ribosomal protein S10 | 50S ribosomal protein L3 | 50S ribosomal protein L14 | 50S ribosomal protein L24 | 50S ribosomal protein L5 |
| 165 | 19 | 35 | -46.285 | 0.309 | 
Residual = 0.309 |  | 
CAnCgtCGtCgggGcAgTtaacGt | 
CAcCGACAAC |  | Rv0073 Rv0227c Rv0361 Rv0717 Rv1018c Rv1281c Rv1282c Rv2441c Rv2442c Rv2523c Rv2564 Rv2929 Rv3218 Rv3461c Rv3494c Rv3579c Rv3791 Rv3820c Rv3924c | rpsN glmU oppD oppC rpmA rplU acpS glnQ rpmJ mce4F papA2 rpmH | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER | PROBABLE CONSERVED MEMBRANE PROTEIN | 30S ribosomal protein S14 | Probable UDP-N-acetylglucosamine pyrophosphorylase glmU | PROBABLE OLIGOPEPTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER OPPD | PROBABLE OLIGOPEPTIDE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER OPPC | 50S ribosomal protein L27 | 50S ribosomal protein L21 | 4'-phosphopantetheinyl transferase | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER GLNQ | hypothetical protein | 50S ribosomal protein L36 | MCE-FAMILY PROTEIN MCE4F | POSSIBLE TRNA/RRNA METHYLTRANSFERASE | short chain dehydrogenase | POSSIBLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA2 | 50S ribosomal protein L34 |