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bicluster 68
Helicobacter pylori 26695
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bicluster 68 genes
Helicobacter pylori 26695
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bicluster 68 short names
Helicobacter pylori 26695
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short_name
[+] Show/hide bicluster #68 rows (long gene names).
bicluster 68 long names
Helicobacter pylori 26695
26
long_name
[+] Show/hide bicluster #68 rows (NCBI RefSeq gene IDs).
bicluster 68 NCBI RefSeq IDs
Helicobacter pylori 26695
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bicluster 68 upstream sequences
Helicobacter pylori 26695
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upstream
[+] Show/hide bicluster #68 columns (arrays; conditions).
bicluster 68 arrays
Helicobacter pylori 26695
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[+] Show/hide bicluster #68 ratios.
bicluster 68 ratios
Helicobacter pylori 26695
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GENES FeAddBack-2-0-repeat G27pH5-T1-2 Log-iron-survival-0 TC1-48HR FeAddBack-2-60-repeat G27pH5-T1-3 Stat-Chelate-T-2 Log-Chelate-T-4 Stat-iron-survival-0 TC2-6HR FeAddBack-2-120-repeat TC-Motility_broth-T G27pH-5-T2 Log-iron-survival-2hrs G27pH-5-T2-3 G27pH5-T1 Log-iron-survival-60 TC-Motility_broth-T-2 FeAddBack-1-30-repeat FeAddBack-1-0-repeat Log-iron-survival-30 Log-Chelate-T-3 Stat-Chelate-T TC1-30HR Stat-iron-survival-60 TC2-35HR G27pH-5-T2-4 FeAddBack-2-30-repeat Log-Chelate-T FeAddBack-1-60-repeat TC2-18HR G27pH-5-T2-2 TC-Motility_broth-T-4 Stat-iron-survival-2hrs TC1-36HR FeAddBack-1-120-repeat TC2-42HR
HP0625 -0.203215374765172 -0.430573071945628 -0.473451935887556 -0.400657585474516 -0.0825562459983512 -0.711778644774087 0.314322541185076 3.00771350646758 -0.253074518883693 -1.63915872537858 0.295376066420038 -1.77577278026333 0.850806931900363 3.02366843258551 -0.137401304528724 0.0720071007690641 1.31250260643787 -1.01691660677944 -0.0695928685275357 0.210615521418553 -0.144381584705317 1.97862077186131 0.134829622358401 1.06819280025711 -0.034691467644571 0.0351113341213585 0.317314089832188 0.774023849957841 -0.267035079236879 0.117877513358103 -1.73588546496851 0.287398603361075 -0.501373056593928 -0.43555898635748 1.04326322819785 -0.0675985027627948 -0.123440744175538
HP0628 0.0636957652062252 -0.729589350427396 -0.00478928074775652 -1.69694062452739 0.876004504715952 0.0836705702761365 0.266297359486754 2.60049600908496 0.298637520076135 -1.72262251676013 0.184495776819498 -1.20898467210527 -0.177904258020321 2.52630387596815 0.177837508462861 0.241566648447817 1.10904389719825 -1.01969961453801 1.61507229230267 1.05197302556993 -0.0742255078955435 1.83955105404072 0.402316270200912 0.202568219501799 -0.201683787865454 0.412779263332771 0.874102142328342 0.753302130715069 0.147399710261092 0.604917864481442 -1.86529969583093 0.0836705702761365 0.267248540680560 -0.894143696955713 0.307198150820382 0.626795031938964 0.0256485174540131
HP0015 -0.0980545669430478 0.0624248381627521 0.876258327044119 0.259796060534253 1.50895299315089 -1.15648080429601 0.824609782872137 2.48658615069197 0.44536190138073 -1.62758931077902 0.196711053009904 -1.01555406234103 0.907247453547308 1.10240516688287 -0.323832488609139 0.134363881830869 1.17213070151504 -1.02772836203872 0.0701721197885493 0.00708711226420043 0.855967827547983 1.78121460457177 0.454215937524498 -0.5901914092675 0.308493259324979 -0.983827099492532 -0.323463570436482 1.34293981545524 0.954100061474748 0.6884789771617 -1.66964598246192 -0.69643984299272 -0.605317054346438 0.936760907359868 0.0731234651698054 -0.165566592539281 -1.07716339717476
HP0019 -0.257401541355637 0.538486839934523 -0.250895641781058 -0.490529609444717 0.00717170801057389 1.64774271740024 0.920166281643156 2.05436144081142 -0.0242734732665578 -1.66376016606046 -0.253064274972585 -1.92399614904362 0.875709301216866 1.36907335228910 -1.00341135924069 -0.794138256258402 0.261986108014917 -0.635828033276981 0.732579510576129 0.368249134399707 0.279335173547127 1.72147624591213 0.344394169292917 -0.649924149021902 0.279335173547127 1.51762472590866 -0.442819679231138 0.419212014400575 -0.0752363532674264 0.421380647592102 -0.914497398388113 -0.55667292178627 -0.171740530290348 -0.124030600076769 -1.30268273967132 0.314033304611549 1.57617782207987
HP0097 0.327289134764435 -1.04003901288412 0.292307922160698 0.676226730486709 0.883927680321396 -0.8441442223032 1.07063990259384 2.35401313999343 0.393753438711535 -1.45762723834123 0.733071200967781 -1.41696157868939 0.251642262508855 1.36535661878032 -1.00636959575303 -0.388076662981981 1.13229428980793 -1.09906980915293 0.994555765180714 0.603640714333955 0.793851057866774 2.11701542460312 0.58571284287454 -0.185185629880308 0.900106491150624 -0.522754331506368 -0.875190048489015 0.813965255113923 0.455845091083168 0.861627157286514 -1.32601042591967 -0.686291500428837 -1.49217118578742 0.877368702958196 0.0308233579477663 0.742691034433809 -0.730892546498601
HP0224 0.387215258391497 -0.629529246398258 -0.119144966619232 0.273871049084460 0.534093257434344 -1.34849369833402 0.984787391483628 1.19336756364037 0.0854111507692083 -1.09162486895772 0.359717550808133 -1.17210596432366 0.11156750676314 1.44285895927479 -1.49268899419800 -0.287484591092997 1.69369170649865 -0.896458212695304 0.736637347438635 0.548177449123384 1.8077065916004 1.57967682139689 0.355693496039836 -1.22508935210624 1.19940364579281 0.88753940124978 -1.02723999266496 0.401970125875253 0.0847404749744921 0.604514215879545 -1.22106529733794 -0.982975390213693 -0.391439339274008 1.55955654755541 -0.733483994579268 0.222229012891312 0.872113857971307
HP0472 0.160390944666646 -1.13371466416568 0.145352919515593 0.527151669184008 -0.220572359160044 -0.773637506382125 0.192137886652204 1.95492861269237 0.230568395371563 -2.10951540730072 -0.139534112512700 -0.640801617547818 1.01171025738462 -0.265686434613205 -1.08525880534562 1.39517989873649 0.385961321932450 -0.0250780321963476 0.710114308521826 0.252289987256418 0.714291537730452 1.69176317254893 0.597329119888925 -0.950752024827866 -0.314977739274991 -0.198015321433464 -0.448649073951023 -0.807890785892858 0.177099861501150 0.162061836350097 -1.30163927835245 1.25482499732666 1.05682433283778 -0.206369779850715 -1.31918364102868 0.101074289904157 0.775279084176392
HP0570 -0.127461765062976 -0.767397915623928 -0.122608511483424 0.510394419678168 0.149867010911435 -0.422123589535787 0.863295287105606 2.99179364270921 0.00704269128461335 -1.64514349158294 -0.463722905931949 -1.21944382046222 -0.0886357364265583 2.69574517435652 -1.20003080614401 -0.360417936881481 2.01906296097896 -0.625960239876979 0.773163434913922 0.0985611873561688 1.11635779518226 2.47526879745687 0.219199204905037 -0.322285230184999 0.0874680363171924 0.193546293127404 -0.993420868043073 0.106187728695465 -0.00058385005468295 -0.193327349356898 -1.13901847542964 -0.587134211240561 -0.194020671296834 -0.44777650131342 -0.170447725339009 -0.0733826537479657 0.443142191504374
HP0626 0.189771489288517 -1.28669400354026 -0.167601318707468 -1.06748078626437 0.136349780876746 -1.20564037698447 0.96530732519733 2.92625244948458 0.245035325576556 -1.22774591149968 -0.237602178005650 -1.19919292941753 -0.571027323610152 2.11479511998854 -1.16879781945911 -0.489973697054361 1.38439141704829 -0.400630495055365 0.537012593965028 0.58122366299546 0.719383253715557 2.09821596910213 0.266219796153638 -0.576553707238956 0.0258221083006685 1.14307266525719 -0.265234096149670 0.971754772764268 0.0156904049811947 0.461485351038042 -1.14761334888202 -1.07024397807877 0.6392506910979 -0.388656663859623 -0.590369666310965 0.135428716938612 1.16241500795800
HP0681 0.0935293177820846 -1.34849515295223 -0.0377148448769141 0.91505132328683 0.210652273066381 -1.27124384202004 0.66751486460087 1.77727563240101 -0.0518360522516165 -1.05942573139950 -0.0285775930462243 -0.855083554094982 -1.05444177585549 0.393397309680177 -0.670677198966516 -1.38089086398831 0.274613035881209 0.376784124533468 -0.0244242967595472 0.0262459179379144 0.642595086880807 0.917543301058836 0.286242265483906 -1.39501207136301 0.473971257641714 0.57281970926463 -0.99546496858467 0.321129954291994 0.0279072364525852 0.0204313031365663 -1.0992973757516 -1.15910484227975 0.499721694619112 1.18501558192085 -1.41162525650972 -0.184741533425286 0.655054975740839
HP0682 0.059834164620936 -1.74634117107801 -0.276983422831471 2.11305694186279 -0.106061065019802 -1.37361552526180 0.512993861172042 1.76403061456670 0.0749155491337303 -1.48205786152047 -0.485250161341488 -0.959236531743596 -0.710034606698851 0.0533707141154527 -1.10933221570426 -0.755278760237234 0.614972746925223 -0.188649599256533 -0.433542557297622 0.0246442674244158 0.99918897141784 1.49041120983457 -0.0931341640088352 -0.183622471085601 -0.19439488859474 0.582655494397806 -1.08850554185326 0.0260805897589676 0.0066902382425178 0.217829621421639 -1.29102699102507 -0.90393812186335 0.336326214022166 -0.106779226187078 -0.0148545967757598 -0.382553114421031 1.01211587242881
HP0690 0.113664622380469 -0.467149819826261 -0.115458360123140 -0.320560384783629 0.612561439122198 -0.818225357533403 2.19548096878423 1.61651429256543 -0.17089133976111 -1.31896994026307 0.173409055990281 -1.18531486713596 0.92052243711092 1.30362591860889 -0.714750462209193 0.851539173561447 0.932224955034492 -0.0224541387305461 0.873096443420657 0.0785570686097546 0.921138359106898 1.15026134161051 0.275652107322537 -0.141327083954193 1.41141226790494 -1.15575061132904 -0.312553398835922 0.577453885351484 0.0225081669758073 0.579301651339416 -0.940793834732915 -0.141943005950170 -1.70268934375701 0.893421869287913 0.191886715869604 0.182647885929943 -1.27955093252051
HP0691 -0.185954396669038 -1.04817458176046 -0.219605661481799 -0.0692966786514645 0.397334193418829 -1.33757545915021 2.57195370620795 1.59083238544477 0.00997074512970715 -1.03620968760481 -0.153050937741004 -1.37421794750189 -0.133607984738076 0.816105488866528 -1.33084520618766 0.442202546502511 0.904346583264437 0.122141627838912 0.760020047511926 0.0697952159079499 1.19449526653891 0.972396918774688 0.225338839931381 -0.619681809811298 1.60803192079352 0.666544311920922 -1.23736947059665 0.723377559160252 -0.0371410256081591 0.333022887332218 -0.962924710901466 -0.66828919231862 -1.37646136515607 0.543904146825524 -0.332524350075733 -0.431234726859833 0.389108328686821
HP0692 -0.326291717639634 -1.32739367233750 -0.180886707504844 0.84860384440981 0.851373463650472 -0.933588436555772 2.64787544402614 1.77833040325976 0.0173141694050792 -1.42173382772257 -0.183194723538729 -1.41077075156161 -0.00547748892954128 0.680291775138706 -1.03975717411451 0.109057806752030 0.885705202154519 -0.156652539149045 0.460741749915341 -0.209448405924177 1.25354525755503 1.14564550797088 0.201089946103216 -0.182040715521786 1.51665908541798 -0.46350327085413 -1.00052090153845 0.106172786709673 -0.0773144879842293 0.249558282814812 -0.869829493619682 -0.592867569553415 -1.55386774566251 0.371594630606511 0.618725447434808 0.366401594530269 -0.83722876714105
HP0695 -0.507614298023918 -2.02553551581012 0.0626762766410941 0.81274667449727 0.179236821347453 -1.90897497110376 1.03401414919409 1.89998655760574 0.0416031838128258 -1.70285378187726 -0.887588503083631 -1.63634183263804 0.274724273225544 0.704088539601511 -1.37687937718999 0.117334611164415 0.955648585238965 -0.153981458999540 0.249699975491976 -0.178347222582225 1.12094065711069 1.58191456272906 0.401162830195154 0.234553690021658 0.575015846028368 -0.138835173529222 -1.44009865567479 1.8341331425174 0.313577788127664 0.661283819794091 -0.927100552136634 -1.20631903211119 -0.412126846145827 -0.452955963500597 0.248382907190209 0.879917157887375 0.222041541154873
HP0760 0.0982925560243942 -0.136957915079294 0.00749412858086541 -1.53092013639983 0.496567476401691 -0.175134526618050 0.417118852388603 2.16602038098839 0.0642431457330709 -1.60108255760620 0.477995070788242 -1.08518240167705 0.319097822762066 1.69242403784544 -0.0203644798393082 0.92373280551102 1.02484923607313 -0.800405515604169 0.402673648022587 0.0559887432382047 1.51598618451767 1.41177435301999 0.723563545010513 -1.28844706311314 0.843252381186074 0.819520974013333 0.263380605921719 0.415055251764887 0.134405566939434 0.381005841473563 -2.35739218619832 0.042575339184047 0.880397192412972 0.798884967776167 -0.295855163105469 0.188059183156065 0.630701516943267
HP0829 0.181859255296577 -0.660833631564355 0.433622068169347 -1.43417298884147 0.439322358272126 -1.11780688813719 0.538127386720308 1.81404232139250 0.585629804243472 -1.77714044335871 0.360468345183674 -0.161108199220668 0.189459642100283 0.768039087532422 -0.69978561393335 -0.467023768069845 0.81649155340605 0.546677821874477 0.389919844048036 0.146707466329435 0.971349434531564 1.67438521387439 0.660683623930071 -0.763438853414389 0.198010077254453 1.30006616379186 -0.75203827320883 0.226511527768351 0.326266604566996 0.384219553945256 -1.79044112026520 -1.22896254514140 1.13095755740940 -0.235211970556804 0.643582753621732 -0.00910046314654302 1.35041872636641
HP0830 0.265495715210865 -0.687584467268444 0.268603585371123 -0.892703897845512 0.561779337155519 -1.51738580005749 1.26208607993379 1.77592061309655 0.434356660584916 -2.05193946762197 0.235452970328365 -1.26875618723680 -0.312568134597238 1.09944087488026 -1.49873857909594 -0.811899273678788 0.903645054783967 -0.236943294030945 0.862206785980518 0.513089371311467 0.860134872540346 1.37604131914328 0.762754940852243 -0.507327997973444 0.44678814122595 1.22479163801069 -1.40550247428818 1.11601618240164 0.48511853986914 0.664339052444053 -1.27704384099749 -1.24907300955517 0.828020214217674 -0.0680823486568934 -0.294956870355772 0.830092127657846 0.95440693406819
HP1024 0.105969310993366 -0.286196221257456 -0.0287593329088961 -0.485033662258192 -0.0633179813447922 -1.03797203723253 1.49031864833854 1.67212719010999 0.0123103652323139 0.118490560426662 -0.0487933320021692 -1.38756532141015 0.317328001427398 1.07060636733447 -0.709915302080183 -0.475016662711555 0.825189878441872 -1.38255682163683 0.207641856391727 0.101461661197379 0.639875386829095 2.17898736716981 0.00529846554966829 0.0779217122627834 1.60150734330621 0.343372200248653 -0.470509012915569 0.21114780623305 -0.0362720825688735 -0.084353680392729 0.143032209315921 -0.67635835359895 -1.17570578099878 1.73924108707246 -0.853659245574418 0.076419162330788 0.327845850951366
HP1025 -0.0640681823658722 -0.267390852216786 -0.200716859830609 -0.419882854604971 0.246857069256791 -0.541348345684737 1.66021368013603 2.05959749591461 0.0824825731760199 -0.0568066584426253 0.166320167562598 -1.52297435240002 -0.165069378752852 0.594750079034165 -0.478635184529423 0.147836288485242 0.751202912653212 -1.75798367209783 0.00128553294334993 0.215170419409895 0.658783517266433 2.05629680322222 0.0613581399447562 0.304949260642766 1.66747520405928 0.415192396568424 -0.632447463994562 0.269301779565009 0.0494756462521703 0.100966452253376 -0.171670764137622 -0.406019945296954 -1.38830609055072 1.10701758489231 -0.400738836989138 -0.296436947909773 0.232334021410297
HP1052 0.00675712247585495 -1.46514954547497 -0.070443745987272 -0.878931961870349 0.266355647198018 -1.16058787758198 0.733802663936293 2.80719741694599 0.171339193704939 -2.16165408402692 -0.245206151519186 -1.67554312106679 0.932319182841476 2.19552899758429 -0.64817771767287 1.60931141397967 0.958618379790454 -1.04860420025085 0.950134767871429 0.631999320907993 0.503048419738814 1.86806157750993 0.585339455353356 -0.0212387968569274 -0.248599596286796 0.704958383411608 -0.300349628992848 0.599761595615698 0.127224411726009 0.309622067985045 -1.01551811376665 1.20294640305837 -0.253689763438211 -0.154431503985619 -0.711804807065558 0.393609825983392 0.840696174116007
HP1099 0.315242830541269 -1.42640530620617 0.163629541296850 0.796748352161735 0.167438920423595 -1.41726279630199 1.24777884076825 2.20850425653313 0.264197150242897 -1.37459775008245 -0.0679807096091963 -1.63287365487571 -0.388730432081057 1.27596824630615 -1.40354903144571 0.0523956707959201 1.09083242074639 -0.51824932239036 0.889697202854293 0.136963887409641 0.987217308498944 2.15517294875871 0.59637501009499 -0.637863826970127 0.193342698485455 1.44967593448569 -1.17193878053966 0.663420082725688 0.215437097420571 0.396001668028246 -1.18565254539594 -1.09651307383013 0.163629541296850 -0.547200603753615 -0.58986564997315 -0.125121396510359 1.18911440221639
HP1100 0.0594501140483907 -0.798954026561382 -0.0146507283514830 0.584816760726147 0.195162892825688 -0.206147287362393 1.30084737267998 1.98357423524062 0.0361374894731495 -1.71397454113960 -0.108733820387278 -1.29184951758077 -0.0479544777446847 1.05523222090512 -1.5532839503174 -0.128716070023199 0.926180192006464 -0.375163815532891 0.995285471997358 0.610627166505878 0.924515004536804 1.72213980250398 0.355020889913056 -0.694879809707627 0.0527893641697504 1.46570093217633 -1.28602136143696 0.597305666748598 -0.0304700093132538 -0.0512848526840049 -1.19859901927980 -1.28019320529315 0.0677760513966911 -0.525863281537129 -0.74816580873675 -0.231957693142124 1.59225517987050
HP1177 0.377726842829065 -2.34847847041573 0.337839347871687 0.676253252457441 0.123286611837791 -2.48913437368648 1.0222247876667 1.36567711266812 0.433989204137367 -0.077830336420989 0.126225690413597 -0.752978672120608 0.125385953677653 0.99955189579619 -2.41061898887564 -0.270549917320321 1.16456016440934 -0.228982948891053 0.317265797841039 0.570866292096369 1.27750475539392 1.18261450423216 0.665756543258131 -0.405327663439461 0.643503519755594 0.787098501602155 -2.72132158117522 0.102713061807143 0.448684597016401 0.064924908689627 -0.257114129545204 -1.36808583120017 -0.357462669490608 0.442386571496815 0.574645107408121 -0.143749670192656 0.654000228954904
HP1288 -0.0274950573834587 -0.719576076583695 -0.17040737921367 1.62964557327697 -0.180844795976550 -0.554183164802664 0.597947070176848 2.29764024610133 -0.0499756473342785 -1.35947001196953 -0.815118583874679 -0.777383307885803 -0.53651984412702 0.770565885870642 -1.01904964985711 -0.451414753598917 0.89340625238762 -0.190479334526902 0.0688503281200545 -0.158364206025731 1.16959635749769 1.82233634428399 0.153955418648158 -0.854459616288613 0.176436008598977 0.347449067867713 -1.37311894158253 -0.628047960355357 -0.118220295399267 -0.0234806663208123 -1.60916513606613 -0.966059687830183 0.0383409560439419 0.499193050035747 -0.299670771430883 -0.572649363690837 0.447808844433873
HP1289 0.204161669852244 -2.42308431127414 0.0612339647029248 0.966442763981948 0.370565423190341 -2.09303869262015 0.614302041150291 2.02079351646026 0.133733525285913 -1.68635068134987 0.0474245245918795 -1.07528295643611 -0.332335078461868 0.634325729311307 -1.10842561270262 -1.00140245184202 0.579778440872678 -0.336477910495181 0.544564368589512 0.37332731121255 0.761372578332924 1.47255874405176 0.286327838512964 -0.84466530658165 -0.0319797560466314 0.713039537944266 -1.13121118888584 0.395422415390222 -0.0706461883575584 0.495540856195301 -1.4080904631123 -1.15606818108572 0.164114293530213 0.592206936972619 -0.154883773034935 -0.00505134783009290 0.718563313988684
[+] Show/hide bicluster #68 motif PSSM #1.
bicluster 68 motif PSSM #1
Helicobacter pylori 26695
11x4
POSITION A C G T
1 0 0 0 1
2 0.3125 0.0625 0.1875 0.4375
3 0 0 0 1
4 0.125 0.125 0 0.75
5 1 0 0 0
6 0.375 0 0.4375 0.1875
7 0.4375 0 0.5625 0
8 0 0 1 0
9 0 0 0 1
10 0 0 0.875 0.125
11 0.0625 0.0625 0.1875 0.6875
[+] Show/hide bicluster #68 motif PSSM #2.
bicluster 68 motif PSSM #2
Helicobacter pylori 26695
15x4
POSITION A C G T
1 0.538462 0.461538 0 0
2 0.769231 0.230769 0 0
3 0.384615 0.615385 0 0
4 0.230769 0.307692 0.230769 0.230769
5 0 1 0 0
6 0.153846 0 0 0.846154
7 0.307692 0.384615 0 0.307692
8 0.076923 0.153846 0 0.769231
9 0 0 0 1
10 0.846154 0 0 0.153846
11 0.384615 0.076923 0.384615 0.153846
12 1 0 0 0
13 0.923077 0 0.076923 0
14 0.076923 0 0.923077 0
15 0.384615 0.461538 0 0.153846
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