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bicluster 64
Helicobacter pylori 26695
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bicluster 64 genes
Helicobacter pylori 26695
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[+] Show/hide bicluster #64 rows (short gene names).
bicluster 64 short names
Helicobacter pylori 26695
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short_name
[+] Show/hide bicluster #64 rows (long gene names).
bicluster 64 long names
Helicobacter pylori 26695
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long_name
[+] Show/hide bicluster #64 rows (NCBI RefSeq gene IDs).
bicluster 64 NCBI RefSeq IDs
Helicobacter pylori 26695
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[+] Show/hide bicluster #64 gene upstream sequences.
bicluster 64 upstream sequences
Helicobacter pylori 26695
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upstream
[+] Show/hide bicluster #64 columns (arrays; conditions).
bicluster 64 arrays
Helicobacter pylori 26695
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[+] Show/hide bicluster #64 ratios.
bicluster 64 ratios
Helicobacter pylori 26695
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GENES G27pH5-T1-3 Log-Chelate-T-4 G27pH5-T1-4 TC1-42HR TC2-12HR TC2-18HR TC1-18HR TC-Motility_broth-T-3 Log-Chelate-T TC-Motility_broth-T-2 TC1-60HR G27pH5-T1 Stat-iron-survival-0 Log-Chelate-T-3 Stat-iron-survival-60 TC1-36HR Log-iron-survival-2hrs Log-iron-survival-0 TC1-24HR TC-Motility_broth-T-6 Log-Chelate-T-2 TC-Motility_broth-T-4 G27pH5-T1-2 FeAddBack-2-120-repeat G27pH-5-T2-2 TC2-50HR Stat-Chelate-T FeAddBack-1-0-repeat Stat-Chelate-T-5 G27pH-5-T2-3 Stat-Chelate-T-3 Stat-Chelate-T-4 Stat-iron-survival-2hrs Stat-iron-survival-30 TC-Motility_broth-T-5 TC1-48HR
HP0114 1.73068359376097 -1.27662509518382 1.74672257343534 0.60690899614137 -1.08485468603371 -0.603336622331366 0.524273383471236 -0.159475293516674 0.144219299882851 -0.70305723508942 0.204191136926156 1.75439338980135 0.0570509320873507 -0.359265192503962 0.204888483868520 0.912695630367989 -0.911215297385076 0.137943177401575 0.21709205535989 -1.39935815703988 -0.0384855990165191 -0.186602089574635 1.67280379754476 0.741148282546443 0.867368079114328 -1.86135050635603 -0.0587086603450761 0.604119608371915 -1.39343070802979 1.55320879692933 0.113884707890016 -0.191204579394237 -0.757450296593812 0.0797147077141803 -1.03115897147168 0.0319464421622464
HP0159 1.60110695589912 -0.0145133302719885 1.93953142996867 0.330394371270158 -1.09980560918468 -1.04664314390939 0.308351397863329 -1.25280977753797 0.242222477642843 -1.27614939643931 0.544340877865851 0.850349214572417 0.164423747971682 0.0684719813772498 0.627326189515089 0.448389111271419 0.134600901597737 -0.00414016631583372 1.20952001655428 -1.53418184984867 -0.255689392252587 -0.889749039072549 0.26685874203871 -0.430736534012699 1.46495917897459 -1.66254975380608 0.155347229510046 -0.413880142583948 -0.44888957093597 1.73077150535105 0.769957193912217 0.476915312150845 0.14756735654293 0.74532092951635 -1.28263262391191 0.78551693984645
HP0616 1.26510755885323 0.539847985321919 1.39972013121321 1.30814695273703 -1.83372880078056 -1.25681777638065 1.15521974468182 -0.79803615221501 0.0426056261962839 -1.07183995585878 -0.665255043424556 0.81639898431997 -0.134130608262736 -0.00867535375037456 0.292600403436244 1.22573109210848 0.643325676999998 -0.116731704352262 1.00961839090470 -1.36762132233682 -0.274237571331285 -0.324602819493181 0.912550821719955 -0.0727765786836977 1.15888267182087 -0.868547499641666 0.431791634720031 0.63966274986095 -0.752249562976923 1.30997841630656 0.166229417139121 -0.265080253483667 -0.425333315816975 -0.131383412908450 -1.25864923995018 -0.654266262007415
HP0981 1.97182807907108 -0.461758254846614 1.57495664165507 1.06289824351146 -0.349712756684311 -1.02408005403500 0.900589344304385 -1.15811579015439 0.270202522867874 -1.03769305848462 2.15508006204681 0.528849607410761 -0.562285056936158 -0.319345285219761 -0.696320793055549 0.802156850591707 -1.10680523492118 0.00317820481752393 0.874410489593567 -1.30052875978124 -0.0135762621974000 -1.27644421344729 1.91318744451885 1.12258603225213 0.874410489593567 -0.39892900354065 -0.382174536525726 0.331984619985405 -1.55917584432413 1.45872252673904 -0.228242870826112 0.0544887600507284 -0.943449181525676 -0.23871441271044 -0.922506097757022 1.62940865945357
HP1016 1.67558680680950 -1.67492442663364 1.40642541728172 0.354138355960427 -0.966092170049158 -0.492319407486678 1.32604237787523 -0.541036401066367 -0.257259913464676 -0.509370355239569 0.816949794967477 0.315164761096675 -0.293797658649443 -0.927118575185406 -0.578792071090627 0.187282652949990 -1.20115166407116 -0.175658949218696 1.27123576009808 -1.00384784007342 -0.953912921654236 -0.721289277311218 0.887589435658027 1.03008664187862 1.61103679031642 -1.79428106090388 -0.202453295687525 0.388240251466210 -0.371744848376946 1.53917922478637 -0.894234604519116 -0.502062806202616 -0.67866190792899 -0.654303411139145 -0.304758982204873 0.896114909534472
HP0178 1.07272151566422 0.0513070394835041 -0.265633982744644 0.767305621517094 -1.14442499892269 -1.28560781791523 1.30754600031507 -0.421223211838463 0.633326007575195 -1.19772871629743 1.07272151566422 0.510871521714319 0.556972034038414 -0.362156930423217 -0.494695903354988 0.535362418886494 -0.885109617099662 0.388417035853444 1.46169458839876 -1.19052551124679 -0.290124879916820 -0.667572824570342 0.888319466367842 1.55101433102670 1.48762612658107 -0.975870000737723 0.470533573430737 -0.000556036881102029 -1.06663038437578 0.258759344941929 -0.599862697094328 -0.223855393450934 -1.41094358579636 -0.658928978509574 -0.915363078312349 0.971876644955263
HP0239 -0.156296112597398 0.628301022923939 0.551321681325619 0.5856663106541 0.435260520146613 -0.626462245128675 0.813051442759906 -0.558365135253238 0.112539434215196 -1.51113252472783 1.47744237563156 0.482632422668656 -0.0088510659975396 0.422825395734577 -0.199522973648763 0.596917137503085 -0.250447768859959 -0.094120490537217 0.653171271748011 -1.40573004161628 0.460130768970686 -0.715284562357505 1.78832048593247 -0.682124230592075 1.05642459196690 0.299658449177265 0.200769602662501 0.466052256785941 -1.2322304486293 1.50112832689258 0.103065053710787 -1.17597631438437 -1.94399328402300 -0.996555233582136 -1.28966888043728 0.29373696136201
HP0240 1.79004859468441 -0.282554723384462 1.97930864953536 -0.498558046855659 0.637002282250064 0.63391652048619 -0.153981316556368 -1.24839815547710 0.0990511480813202 -1.52303095246191 0.424084720542741 1.79416294370291 -0.321641039060202 -0.223925249870851 -0.936736217325803 -1.33788524662946 0.61437336264832 -0.128266635190749 -0.530444251749027 -1.27822718586122 -0.386442036101562 -1.04473787906140 0.536200731296839 0.160766383358805 2.78366388265192 -0.0120362754181528 -0.0860945577511348 -0.453300207652170 -0.200267743014482 2.55737468663447 -1.26279837704185 -0.89044979086769 0.087736688280448 -0.623017104665254 -0.844163364409575 0.665802725379557
HP0241 1.36821845352700 -0.684224206324846 0.744511822991923 -0.827316270423085 0.500927622275073 0.587219783067141 -0.82076243542622 0.222389634908272 -0.0495945174616637 -0.731193357135719 -0.591378210535912 0.66368119136391 0.105512910797496 -0.52256294306882 -1.16702338442730 -1.43573061929880 -0.0900098332756701 0.0978667699678193 -1.09274658779615 -0.305194082339434 -0.435178476443942 0.378589369000243 1.48072595430653 1.24697250608498 1.91218675826687 0.90726539208076 0.135005168283393 -0.58810129303748 1.37149537102543 1.16504956862415 -2.27025227556640 -1.54714581424552 -0.808747071265299 -0.81093168293092 0.0334207258319712 -1.49143821677216
HP0270 1.50898346813574 -0.896355227621218 0.432440468052941 NA 0.49268979954589 0.341735430530589 -0.326965940984558 -0.278634059677027 0.569491145185253 -0.411050172848344 -1.12808342567102 0.628416315546489 0.348356236189155 -0.707000185786236 -0.226991775540214 NA -0.137610899149576 0.411253889945530 -4.49145270022246 -1.33068007882314 -0.67124783522998 -0.552735413941652 1.47521735927706 0.744942495137248 0.0934552183343713 NA 0.472165302004336 0.237788781691106 -0.166080363481409 0.977332773752908 -0.724876361064364 -0.939390464401896 0.166946161144452 0.0557166260805462 -0.88046529404066 -0.628874679015159
HP0272 1.24476980886287 -0.387545850019391 1.27109748078032 -2.06892671565691 -0.148203378042520 -0.358824753382167 0.56384047608867 -1.22883463901809 0.492037734495609 -1.31978477836930 0.738560480631786 1.40752268980714 0.456136363699079 0.0181396399814049 -0.170940912880323 -0.285825299429221 -1.00145929064006 0.380743485026364 0.982689802048194 -1.47535738515427 -0.313349683706561 -0.952394083884806 1.30101528977743 1.10714788747617 1.44342406060367 -1.29345710645185 0.207220192843133 0.791215824466698 -1.06368833335405 1.66002899774274 -0.504823661288058 -0.199662009517547 -0.0608433757709624 -0.0321222791337379 -1.05172120975521 1.68875009437996
HP0279 0.422294485528305 -1.11227997926278 1.45602111740845 0.961967731843198 0.612539011207655 0.224284877168164 1.67635533847586 -1.11616252060318 0.210695982476782 -1.36270389571826 1.05708999468287 -1.22390304279914 0.137898332344377 -0.927859265594026 0.238844407194645 0.851315303641943 0.549447714426238 -0.0348747573031964 1.21530355430397 -2.16347804717471 -1.07442520119393 -1.39958803845201 0.6542763306169 0.292229350625075 1.28907183977147 -0.715290127207405 0.492180229655413 0.320377775342938 -1.18022445271970 1.25024642636752 -0.169793068881920 0.0253046334729247 0.507710395016993 -0.335771711183802 -1.70145562766771 1.01632331060873
HP0478 0.50455048135591 -0.0275676408539179 1.75449237916423 0.836677899916407 -0.147800147214528 0.631925512846854 1.51997947071829 -1.33703058141502 -0.0311389034190845 -1.61201779893285 0.806917378540019 0.0402863478842482 0.498598377080633 0.00814498479774843 -0.107325838142639 0.768823911178241 0.318844827967246 0.00695456394269289 1.25808688260607 -1.50845118454302 -0.071613212490973 -1.37631446963185 0.241467472388635 -0.266842232720082 1.36641518041612 -0.734677628756911 -0.00733048631797366 -1.57511475242613 -1.23703522959035 0.885485154973685 -0.0251867991438068 0.243848314098746 0.502169639645799 0.0295725601887483 -1.42750256639924 1.23070720293979
HP0537 0.765326795885693 -0.152693690963839 1.10243871459143 0.796431885641584 0.225611454715913 0.152472459884494 1.36473028226272 -1.56839561390762 -0.0366801129553818 -1.68104647951004 0.652675930283278 0.242425016746124 -0.0644224903052303 -0.325873379875015 -0.111500463989822 0.787184426524968 0.737584418535845 -0.109819107786801 0.993150561395055 -2.59402289775051 -0.325873379875015 -1.28424641559705 0.688825088648232 0.448391151616212 1.99103546788809 -0.728558190498573 0.166763987610174 -0.0307953662448079 -0.941249750180745 1.79852018264217 -0.871473467755369 -0.58900562564782 0.129774151143709 -0.277954728088913 -2.0122736515052 0.783821714118926
HP0650 0.770165818206751 -2.06743227041315 0.943944895781628 0.155987708421572 0.401182845273795 0.241686979554388 0.761833944624394 -1.66750233846001 0.296439291667020 0.302390629940133 1.49622908752644 1.73428261845093 -0.280840520824863 -2.08528628523248 0.685656814728558 0.786829565371466 0.014345857521502 0.0238679987584815 0.689227617692426 -1.85794516319960 -1.91983908123996 -1.68535635327934 0.615431023105834 -0.229659011676098 1.64739307966349 -1.25328919465140 -0.0511188634827322 0.480930778133499 -0.998571916562195 0.987984799002658 0.633285037925171 0.59876727594112 0.823727862664761 0.430939536639356 -1.00571352248993 1.52717604654662
HP0675 1.76713364165421 0.0831381023422924 0.991371691780487 0.884992950918113 -0.94953854244434 -0.777927554826736 0.32700634790415 -0.991688609578488 0.22464189914979 -0.722731038341542 1.78419438311328 1.10577901685889 -0.200873064299706 0.163423944502575 0.219624034014772 0.342059943309203 -0.0352835148441241 0.0530309115321865 0.282849134715995 -0.784952566015761 0.435392234820531 -1.11613166492693 1.44197598090507 -1.15727815903407 1.42491523944601 -0.453773467104596 0.0179058555870630 -0.846170520662976 -0.481873511860695 1.28943288080053 0.206577584663727 0.285859853797005 -0.164744435327579 -0.0864657392213041 -0.649470207370284 1.23624351036935
HP0756 1.72313902994525 -0.350007586282675 1.31820710553663 0.985350442754149 -0.764112725807342 -0.79949512696926 0.838579000897305 -1.27388139439942 -0.406357336281285 -1.02751504556829 1.79783521017596 1.74672729738653 0.174176134634626 -0.406357336281285 -0.165232824659326 1.17798796019126 -0.48498489441888 0.0116791811502626 0.0575452567305265 -1.36299262695536 -0.52560913278997 -1.20311659207558 1.02204330321836 -0.429945603722563 0.90148104740738 -0.673691033949108 -0.258275435122147 0.92113793694178 -1.03799871998663 1.46759946599807 -0.857155336270163 -0.782459156039448 -0.677622411855988 -0.0499124060575202 -0.774596400225688 1.63533825669160
HP0771 2.12795291354394 0.366328072250369 1.27661748258414 -1.34933264953129 -0.108301422709613 -0.446037779123241 -0.471018278857977 -0.940651673871011 0.109528534977284 -1.04357133277812 -0.408067419526443 1.11973994425000 -0.0213692836327319 0.394306231953273 0.130512154754462 -1.39429754905381 -0.275171160937648 0.441269571454576 -0.653875536916244 -1.29337633012548 0.185469254170881 -1.01859083304339 2.15293341327868 1.14072356402718 2.22088037255716 -0.953641533733074 0.189466134128439 0.45126177134847 -0.993610333308651 1.97507225516736 -0.0313614835266263 0.215445853852564 1.29460344239315 0.115523854913621 -1.09053467227943 -0.100307662794497
HP0772 1.35098426488911 -0.430480801730117 1.13092681701925 0.712817666066502 -0.254434843434225 -0.259436149067631 1.02389887646436 -0.411475840323174 0.270702248073409 -0.915607448170502 1.38599340432295 1.02890018209776 -0.0313766121843157 -0.791575068462033 -0.660540860866794 0.76883228916065 -0.071387057251564 0.260699636806597 0.813844039861304 -1.67980694895494 -0.603525976645966 -0.80557872423557 2.33724173579678 0.115661773437822 1.27396415813466 -0.854591519442949 0.273703031453452 0.245695719906378 -1.56377665825992 1.45301089981059 -0.238430665407325 -0.0693865349982016 0.179678485545419 -0.349459650468939 -1.58678266417359 1.01089548181750
HP0971 -0.440162258484677 0.217744947413824 1.00334209161056 0.913351087476566 -0.830528641282124 -0.800126275020641 1.12251936735557 -1.33764011052367 0.214096663462446 -1.18927656316763 1.60774113288885 1.23804835914921 0.28098186923771 0.0778940626110007 0.139914889784427 0.802686474284766 0.918215466078403 0.064517021455948 0.533929556533252 -0.867011480795904 0.145995363036724 -1.55653714760635 0.103432050270647 0.432993700545127 0.938889075136212 -2.04662329174146 0.237202461821174 -0.156812204927651 -1.10293384298502 1.61625379544206 0.0620848321550293 -0.00601646827069358 0.177613823948666 0.302871572945978 -1.32183088006770 1.42167865136857
HP1028 1.39618639274552 -0.313582638922077 1.24391008836263 1.55024370653641 -0.921797351749666 -0.857681013062131 1.57695884765621 -0.74191540154297 0.123655170738752 -1.02064337389295 2.50130273040151 1.03642249233213 -0.0517742559479754 0.308880149169409 -0.496136103240753 0.166399396530442 -0.430238755145231 0.0292616721154369 1.22075696605880 -0.920906847045672 0.095159020210959 -0.331392733001947 0.857431046829431 0.419302732464608 1.86281085763814 -2.03492823174159 0.158384854194500 0.149479807154565 -0.572719507784197 1.27507775300240 -0.34207878944987 0.0444002520833271 -0.0731463688438204 -0.251247309642529 -0.777535589702712 0.742555940014264
HP1049 2.21222560416129 -1.34318421160923 2.06799877696962 0.780883607031797 -0.321577519001532 -0.5007684255124 0.894516864819177 -0.655921527491323 -0.0440501394054316 -0.360912108235625 1.1775073818089 1.00596486764911 -0.144571867448114 -1.43168703738594 0.117658727445840 0.394093479563215 -1.03943377252373 -0.0997741408203967 0.64758305462737 -1.05800843966205 -1.11045455864084 -0.738961215874408 1.57959429397963 -0.464711718714482 1.20045255886212 -2.03263215068458 -0.272409282458916 0.434520696276033 -0.487656895767703 1.70961696394788 0.182123748690603 0.0958061778713435 0.526301404488917 0.0684904909032234 -0.630791095480652 1.1818778917238
HP1062 1.21410183982511 -0.823375199870889 1.84669643910642 0.54402856590056 -0.441774148957926 -0.672324783884508 1.29133062393845 -0.909689723291678 -0.0669874025255524 -0.70526058887402 1.17435173035501 0.139713166718969 0.0215985557220996 -0.33388099468194 -0.29413088521184 0.218077668245738 1.09712294624167 -0.173744839388107 0.99490837903284 -0.91877546259913 -0.538310129099599 -1.16749757614061 1.34811649461002 0.412285345942514 1.45600964888600 -1.11411885770934 -0.0783445766598668 -0.0306444452957465 -0.940354093454327 1.66952452261111 -0.0965160552747698 0.211263363765150 0.371399519058982 -0.49174571514891 -1.11071170546904 1.70018889277376
HP1121 0.671017560574536 0.120885846904154 1.17848599849089 0.560991217840460 -1.43520100033493 -1.10137957952269 0.756344112082595 -0.918750820154567 0.311747870014287 -0.754085545314453 0.422522691270363 2.01378802904347 0.218188054764222 0.0916951845461338 0.215194140676220 0.511591635388425 -0.888063200752546 0.202470005802211 0.507849242778423 -0.809472955942492 0.116394975772151 -0.956174746254593 0.96367266267674 0.171782386400189 2.09686914498553 -1.93443617450927 0.262348287562252 0.256360459386248 -0.448706308338241 1.30123647609897 -0.0557550842879685 0.142591724042169 0.348423317592312 0.129119110646160 -0.882823851098543 0.250372631210244
HP1372 1.36727229166675 -0.457407529869687 1.5977086608814 0.939319034553821 -0.871252437847023 -1.25217786450798 0.918156510850435 -0.85831978447273 0.798235543197911 -0.89006357002781 0.951075992166814 1.17680957833627 -0.0764821032087301 -0.0306299685180595 -0.763088427807492 0.645395094229009 -1.39326135586389 0.661854834887198 1.45780086528679 -1.47438436339354 -0.0717793201635331 -0.673735549948749 0.989873952289689 0.989873952289689 0.718288231429562 -1.72833464783418 0.631286745093418 0.978116994676696 -0.852441305666235 0.966360037063704 -0.209335724235545 0.0693041711923767 -0.305742776662084 0.351471153904197 -0.991173405499546 0.915805119327836
HP1513 0.499888007809725 -0.789689246929835 0.842049308714579 0.694409156381401 0.220001463102279 -0.400646949786484 1.55925857952741 -1.83436577505038 0.383735091756135 -1.15144260596421 1.10304351165427 1.29336636205534 0.55866418219829 0.103148830686920 -0.225018142982561 1.22619359132555 -0.40274609887179 0.578955956689579 1.54176567048320 -1.15774005322013 -0.108865226928971 -1.51109681591328 1.4762255712642 -0.0556867834345562 0.781873701602478 -1.28438871470025 0.259185579361321 -0.514001000393 -1.27389296927372 0.541870989515842 -0.190732041255899 0.158426423266641 -0.649046258214343 -0.546187953034357 -1.60275965930497 1.25768082760514
[+] Show/hide bicluster #64 motif PSSM #1.
bicluster 64 motif PSSM #1
Helicobacter pylori 26695
11x4
POSITION A C G T
1 0.15 0.65 0.05 0.15
2 0.2 0 0 0.8
3 0.9 0.1 0 0
4 1 0 0 0
5 0.85 0.15 0 0
6 0.5 0.2 0.1 0.2
7 0.1 0.9 0 0
8 0 0.45 0.5 0.05
9 0 0.9 0.1 0
10 0.45 0.55 0 0
11 0.35 0 0 0.65
[+] Show/hide bicluster #64 motif PSSM #2.
bicluster 64 motif PSSM #2
Helicobacter pylori 26695
21x4
POSITION A C G T
1 0 0 0.6 0.4
2 0 0.2 0.8 0
3 1 0 0 0
4 0 0 0.8 0.2
5 0.4 0 0 0.6
6 0.8 0.2 0 0
7 1 0 0 0
8 1 0 0 0
9 1 0 0 0
10 0.6 0 0 0.4
11 0.2 0 0 0.8
12 0 0 0.2 0.8
13 0.2 0 0 0.8
14 0.2 0 0 0.8
15 1 0 0 0
16 0 0.8 0.2 0
17 0 1 0 0
18 0.2 0.8 0 0
19 0.6 0.4 0 0
20 0 1 0 0
21 0.4 0.6 0 0
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