[+] Show/hide bicluster #35 rows and columns.
bicluster 35
Helicobacter pylori 26695
22x38
[+] Show/hide bicluster #35 rows (genes).
bicluster 35 genes
Helicobacter pylori 26695
22
[+] Show/hide bicluster #35 rows (short gene names).
bicluster 35 short names
Helicobacter pylori 26695
22
short_name
[+] Show/hide bicluster #35 rows (long gene names).
bicluster 35 long names
Helicobacter pylori 26695
22
long_name
[+] Show/hide bicluster #35 rows (NCBI RefSeq gene IDs).
bicluster 35 NCBI RefSeq IDs
Helicobacter pylori 26695
44
[+] Show/hide bicluster #35 gene upstream sequences.
bicluster 35 upstream sequences
Helicobacter pylori 26695
22
upstream
[+] Show/hide bicluster #35 columns (arrays; conditions).
bicluster 35 arrays
Helicobacter pylori 26695
38
[+] Show/hide bicluster #35 ratios.
bicluster 35 ratios
Helicobacter pylori 26695
22x38
GENES TC2-50HR FeAddBack-2-30-repeat G27pH5-T1 Stat-iron-survival-30 Log-iron-survival-30 Stat-Chelate-T-3 TC-Motility_broth-T-5 FeAddBack-1-120-repeat TC-Motility_broth-T Stat-Chelate-T-5 FeAddBack-2-120-repeat Stat-Chelate-T-2 Log-iron-survival-2hrs TC1-42HR FeAddBack-1-60-repeat FeAddBack-2-0-repeat TC1-24HR TC2-18HR Stat-Chelate-T-4 G27pH-5-T2-2 TC2-28HR Log-Chelate-T-5 Log-Chelate-T-2 Stat-iron-survival-2hrs TC2-22HR G27pH-5-T2-4 FeAddBack-1-30-repeat TC2-35HR TC-Motility_broth-T-3 Log-iron-survival-60 Stat-iron-survival-60 TC-Motility_broth-T-6 TC1-30HR Log-Chelate-T-4 TC-Motility_broth-T-4 TC2-12HR G27pH-5-T2 TC-Motility_broth-T-2
HP0002 0.620469442014315 -0.436498916328019 -1.87220569323898 0.461975647287227 0.608119276191425 1.55599450309823 1.18343116744105 -0.572350740379809 1.94502472651927 0.895260631573617 -0.862579637217724 1.19886887471966 0.954953099717585 -1.56139318669625 -0.514716633206323 -0.978877032049938 0.0708870628957107 0.403312359628499 1.20916067957207 -1.64269844503027 -0.40047759934459 1.06404623115311 0.928194407101324 -0.397390057888868 0.307598574501102 -0.774070115487012 0.191301179668888 0.460946466801986 1.44690137166270 0.560776973870347 0.382728749923683 1.6156869712422 -1.08282426105926 0.667811744335393 1.25650298189315 0.965244904569993 -1.75487911792152 2.14777328211171
HP0005 1.57016293499275 -0.412313304586437 -1.23493254616152 0.0501841899447951 0.313952292294638 -0.0256943052517351 1.26424011308928 0.77404094570852 1.37745564560474 1.59063808449023 1.31482577655363 -0.399064678441011 -0.117230267711041 -1.64684437722840 -0.519506734308519 0.56085850682303 -1.17230267711041 1.32325672046436 -0.066644604246688 -1.13496563979149 0.637941422578236 0.528339151738803 -0.613451537885176 0.330814180116089 1.57859387890348 -0.691738874199056 0.276615254975711 0.56567618905773 0.636737002019561 -0.230445800226499 0.133289208493376 1.17029530951262 -1.30960662079937 -1.55289957365174 1.15704668336720 1.10525659934417 -2.61399408584449 1.17511299174732
HP0006 1.99716276790247 1.25902625279364 -1.52948947095083 0.0128853367392657 0.118158537899066 -0.0262860869481019 1.07173788328842 -0.104628934322837 1.27126732269595 0.605353120010699 -0.377604793144179 0.181812101391038 -0.406983360909704 0.0275746206220285 0.138968356732980 0.238121022941629 -1.66536534686638 1.08153073921026 0.254034413814622 -1.24304843523695 1.21863072211605 0.098572826055382 -0.287020875867142 0.00676480178811448 1.22719947104766 -0.653028865945982 -0.000579840153266925 1.06439324134704 0.459684388173301 -0.293141410818293 -0.263762843052767 1.32635213725631 -0.870919910206963 -0.782784206910386 0.24546566488301 0.965240575138387 -2.87478305321386 1.10723698600509
HP0028 0.838152395609002 0.101288586113427 -0.652926804453473 0.491699160218225 0.171851682470146 0.315869805362138 1.29565574985626 -0.0444646948856979 0.502688494896731 1.43504678446256 0.00643327625685357 0.277117940969514 0.826584674894786 -1.15959297173614 0.0902992514349214 -0.0103399187787600 -1.79755276912517 1.0145601365008 0.269020536469563 -0.887173148916352 1.07124196800046 1.12792379950012 0.343053949040547 0.432703784575723 1.14354022246431 -0.689943510738965 0.408411571075868 1.27830416878493 1.20774107242821 0.109964376649089 0.384119357576014 1.45181997949817 -0.831069703452403 0.340162018861992 1.32573182371322 0.997208555429476 -0.459167482490351 0.946310584286924
HP0059 2.05881557073041 0.480151854100286 -0.806078674057689 -0.0524093997026461 0.639444729121699 -0.306802498617440 1.29207001559003 -0.802512415661687 0.525324460449642 0.874817783257817 -0.128489578817351 0.150867328869455 0.325613990273543 -1.13655195208719 0.420714214166924 0.0866746777414234 -0.993901616247116 1.38598148668474 0.299461428702863 -1.05690551457648 1.5072342721488 0.562175797208327 0.297083923105528 0.959219231963192 1.36220643071139 -1.04620673938848 0.0557671049760746 0.805870120935116 0.276875125528185 0.362465327032228 0.0319920490027294 1.63086456321019 -1.98769895593295 0.294706417508194 0.323236484676208 0.628745953933694 -1.05096175058314 0.218626238393489
HP0317 1.82920063016691 0.317938052728639 -0.847389827496486 0.481393958540144 0.298210615820354 0.638508902488272 0.868192632206162 -0.140020304070835 0.262983049912702 0.89778378756859 -0.197088960841231 0.314415296137874 -0.201316268750150 -0.461295705148621 0.184073302279562 -0.0632242103921542 -1.71469250014288 -0.0434967734838691 0.90482930075012 -1.57378223651227 1.47128856054516 0.462371072950012 0.733623330438932 0.933011353476241 0.561008257491437 -1.42089460047306 0.241141959049958 2.01731583211377 0.855510708479407 0.181959648325103 0.366552093681199 0.86537442693355 -1.41384908729153 1.02248937088168 0.657531788078404 0.595531272080936 -0.513432502691945 0.234096445868428
HP0722 1.36898833364805 0.102808216182863 -0.381118537344748 0.0663713782701955 0.457498060238982 0.135259774948832 0.667009878236818 -0.173884021716454 0.352742151240064 0.332815755506574 -0.000239716038899150 0.598121481558182 0.336231709060887 0.250832870203073 0.45522075786944 0.17283526404627 -0.143709765320026 0.879368324196582 0.173973915231041 -2.22402547989637 1.03991814124927 0.241154335132521 0.402273477777596 0.237738381578208 0.633419668286078 -2.91689472582943 -0.369162699904654 0.779736345529132 0.0509995872757891 0.577056434639921 0.0783272157102894 0.839515532729602 -0.265545442090507 0.348187546500981 0.355019453609606 0.647083482503328 -0.509786121223854 0.134121123764061
HP0725 2.00127555426973 -0.0523581999692378 -1.02254009345863 -0.280868046963694 0.382007500567637 0.031363080179593 0.722802358585231 -0.00705021306516468 0.589833266584147 0.513006680094631 -0.120320180325348 0.0766710670836661 0.616427084984364 -0.0375838564135618 0.406631406493764 0.174181734551128 -0.535971712358366 1.37976816869429 0.407616362730809 -2.61816919747164 1.28127254498979 0.0431825550241338 0.148572872387956 0.401706625308539 1.02124409840989 -2.35321596970652 0.206685290373615 1.13155919695893 0.0707613296613957 0.125918878935920 -0.402017664120237 0.680449240392293 -0.65515141704082 0.0431825550241338 0.0431825550241338 0.878425444038352 -1.19293752246743 0.209640159084750
HP1006 1.93614851760481 0.414570646594748 -0.571476973394039 -0.621873831617524 0.130515627516925 0.130515627516925 0.551507564393913 -0.183064823651425 0.0653560532481767 0.388099569548069 0.0958996036866523 0.260834776054421 0.563215925395329 0.382499918634348 0.623284907924331 0.0780825325975416 -1.23478107708293 0.608522191879068 0.36162849250139 -0.929854631872153 1.66991056961609 0.132042805038848 0.250653592574929 0.149859876127959 0.536235789174675 -0.386179434067287 0.0577201656385578 1.43879770463163 0.335666474628686 0.121861621559357 -0.324074214842387 0.690480718888977 -1.01079504053411 0.277633728795582 0.158513882085527 0.395735457157688 -5.38157710827997 0.350938249847923
HP1276 1.79039469370181 1.16874654760167 -1.39379400034958 -0.381154486340301 -0.0173543646406723 -0.236759592676016 0.62867214013006 -0.115805428502685 0.377387519987018 0.126102899843975 0.139229708358910 0.183298279801907 -0.204880200568316 -0.76652007917161 0.682117003369439 0.126102899843975 -1.10219132548209 0.917461927458632 0.0314023527005151 -1.81854001872569 1.85884162381540 0.120477124766146 0.235805513861647 0.0304647235208768 0.683054632549077 -0.980299532129123 -0.0182919938203105 0.996222778548243 0.184235908981545 -0.249886401190951 -0.536800930160246 1.05248052932654 0.0914106201973611 0.240493659759838 -0.0182919938203105 0.202050863394671 -3.67785868194828 0.189861684059374
HP0065 0.451737824506097 0.340820005697791 -1.06145387119158 0.0452457064153198 0.204496429508810 0.0155023807013605 0.646928399503955 0.068792505938871 0.386054646887771 0.425092761887342 0.0799462530816057 0.0291347383202585 0.162979704033076 -0.00308719786986406 0.335243132126423 0.0904803476052996 -0.531031229292642 0.811136343549772 0.405883530697077 -1.89736525427765 0.87743917378714 0.282572659507954 0.161740398794994 0.389772562602015 0.54468571736222 -2.27969092022583 0.061976327129422 -0.795003245004031 0.159881440937871 0.780773365216772 -0.405241747627356 0.908421804739181 -0.767738529766235 0.156783177842667 0.399067351887628 0.913998678310549 -1.17423064785701 -0.133214247868436
HP0108 1.88820950573284 0.265702614975042 -1.40015369652819 0.00932175513774067 0.86640173101896 0.034092852706562 1.10048860304432 -0.853950995135684 0.223591749108045 0.65832451144086 -0.076138531474693 0.141847127130935 -0.18884702541283 -1.95378772719135 0.128223023468083 0.0192301941652692 -1.32707895870017 1.87086973743467 -0.439035110857926 -1.47942120874842 1.52407437147117 0.357355675979681 0.597635322397248 0.624883529722951 1.64049853004463 -0.819271458539334 0.0811579380873226 0.927090920062572 0.720252255362913 0.108406145413026 -0.255728988848648 1.43985263973717 -2.32535419072367 0.052671175883178 0.715298035849149 0.245885736919985 -1.22799456842489 0.501028041878845
HP0414 2.67797252569177 -0.580392381954455 -0.33165278968826 -0.0519754371899511 0.575442340317316 -0.0210376769578373 1.02465861888761 -0.52470441353665 0.629892798325837 0.69053080838078 -0.73136865188717 -0.112613447244894 0.219039342443366 -0.612567652595853 0.0643505412827967 -0.641030392009398 -1.30681099220449 1.45407473090935 0.407140924654617 -1.82037781205758 2.24731890326075 -0.0420753539156747 0.607617610958715 0.409615945473187 1.03703372298045 -0.381153206059642 -1.04569629584545 1.07168401444042 0 0.623705246279414 -0.67691819387865 1.40828684576582 -1.49862510564359 0.248739592266195 0.00618755204642276 1.28577331524665 -0.462828893072422 0.231414446536211
HP0622 2.06324930358409 0.423179874430427 -0.94374258245289 0.305607916801020 0.185660768108391 -0.0328568097078816 0.407741132519495 -0.161117127121781 -0.0447327650239835 0.183285577045171 0.483747246542547 0.24147775809407 -0.180118655627544 -1.00668514562823 0.606069586298395 0.178535194918730 -0.515020595541615 1.80672866875629 -0.074422653314238 -0.88080001927755 0.654761003094413 -0.310754164104664 0.367362884444749 0.245040544688900 1.32931526504899 -0.766790848242973 -0.218121712639070 0.30798310786424 -0.209808543917798 0.116780227275001 -0.113613305857374 0.417241896772377 -0.895051165656872 0.198724318956103 0.0467120909100004 1.63452731667281 -1.15157180048467 -0.167055104779832
HP0670 1.84497446064729 -2.35825199629662 -0.991916180050698 0.233272632955404 0.442531271479555 0.499974819309713 0.453199358933727 -0.154881625954097 0.156134154440620 0.087201897044429 0.51884912788248 0.547570901797559 -0.0596894609784056 -0.572578280890538 -0.213145795896116 -0.543035884863599 -0.815482426000924 1.28695142458289 0.475356155953931 -1.32590937957748 1.35506305986722 0.251326319416312 0.427760073466085 0.464688068499759 1.60207031553690 -1.00586675595231 0.499974819309713 1.20406859128509 0.148748555433885 0.386728967873114 0.169264108230370 0.99234808642536 -1.23646156938480 0.593525740061686 0.119206159406946 1.01860799400486 -3.9699538239885 0.264456273206062
HP0769 1.94112798485444 -0.263963281742573 -0.908997663518645 0.0161917562267199 0.660096480591626 -0.0640139199661018 0.976400555718247 -0.754234598188834 0.562945943231307 0.759506332774278 -0.0719215218442673 -0.118237475702094 0.31329165536351 -2.51650015960858 -0.25831499468674 -0.470690587986043 -1.17446715514277 1.64063911348415 0.252290155160519 -0.648046801539183 1.40792968678385 0.240993581048854 0.392367674145165 0.634114360134796 1.34918750140319 -0.885274857884149 -0.542988662300699 -2.34027360346660 0.266975701505683 0.666874425058625 -0.129534049813759 1.46893118698684 -0.559933523468196 0.199196256835693 0.309902683130010 0.6103915545003 -0.868329996716651 0.301995081251845
HP0844 1.69882221254332 0.0214489323919015 -1.13073430201727 0.090903413078829 0.404875723033434 0.624656340001657 0.608482008882783 -0.619815724909321 0.481941653658655 0.766419595102372 -0.670241580750515 0.724556620441758 1.82345970528287 -0.893827922687885 -0.479003901050892 -0.334386352223317 -0.586515631429287 0.758808145164078 0.184143674822924 -1.24395461984938 1.12415774220216 0.386798529429987 0.948142962379128 0.297363992655039 0.865368444300187 -0.75491896131403 -0.0489569795373129 1.67027927527472 0.955754412317421 0.88439706914592 0.0661662007793754 0.825408332124146 -1.08696846487208 2.22686655201243 0.914842868899094 0.568521896706742 -1.91281078317692 0.780691063736672
HP1009 0.629664419531046 -0.0104672258108999 -1.60373911609779 -0.237128625523418 -0.261206210108264 -0.0196001027223933 0.815643003910548 -0.756872347941133 0.468593681273799 0.231969143112379 -0.433070348351822 0.40217275828112 0.608907881095834 0.101618081739246 0.547468527327606 -0.0370355950079716 0.0924852048277529 0.943503280671456 0.70438795789781 -1.27412528574662 1.07717538819422 0.128186450936318 0.379755696771091 -0.428919040664779 1.22330141877812 -0.628181809642817 -0.635654163479493 1.32791437249159 -0.0328842873209291 0.468593681273799 -0.121722271823638 0.716841880958938 -0.738606594118146 0.207061296990125 -0.120892010286229 1.06970303435755 NA 0.0866733740658935
HP1161 1.09611139211248 -0.554620325305453 -0.927453348224724 -0.0331944309328497 0.287405946263432 1.01866298638529 0.3423402805583 -0.660886742466018 0.319826209125977 0.285604820548846 -0.466365165290747 0.468419080579310 0.0910832433735739 -0.498785428153292 -0.405126890994828 -0.513194433869979 -0.207003062390384 0.912396569224721 0.983541034950862 -1.30568974828775 1.68958231506852 1.08530463782496 0.241477240541492 0.763803697771389 1.06008887782076 -1.34441395115135 -0.0611118795089304 3.09896318673194 1.04027649496032 0.490933152011633 0.178437840530988 0.571083246310703 -0.413231956710464 0.290107634835310 1.1060175835427 0.51795003773042 -1.06974227967701 0.855661109215267
HP1236 1.77588743880574 1.19049476858326 -1.07618008538114 0.175527183006339 0.264196955113567 0.149701035790641 0.591328153179072 0.464780031822153 0.393327691192056 0.729928476569983 0.545701959764672 -0.0207515358329641 -0.409865487216143 -1.00386687317719 0.56636287753723 0.196188100778897 -1.05551916760859 1.19393825487869 0.23320557845473 -0.97631898281378 1.32392986253103 0.6145716856732 0.588745538457502 0.404519021652192 1.22234701681595 -0.55707452634562 0.426901682572463 0.570667235406513 0.309823148527967 0.0954661266376756 0.0679182362742647 1.13367724470872 -0.942744991433372 0.673971824269304 0.318431864266533 0.698076228337289 -1.66329449875134 0.178970669301765
HP1381 1.95487523734768 1.32176677933185 -2.1394252151981 -0.295845239969606 0.123240704723264 0.0386271529444184 0.821053643511155 0.403958605918963 0.491558518348827 0.505494868053578 0.630922015396337 -0.723890266615531 0.817071829309797 -0.905062812777294 1.00521255032394 0.366131371006068 -1.19971706367774 0.866844506826765 0.0585362239512056 -2.37833406727955 1.66320734709825 0.354185928401995 -0.000195535518816630 0.927567173397466 1.05199886718989 -1.02949450656971 0.576172070127672 0.815080922209119 0.410926780771339 -0.0181136994249251 -0.471045064829334 1.21624870299588 -1.34306237492661 -0.0728636446935899 -0.200281699137028 1.06195340269328 NA -0.0887909014990196
HP1518 0.448693918303328 -0.848181234254732 -1.00578295207332 -0.622463519751836 -0.0655150762742757 -0.0842135851680067 1.00564236178089 -0.651846890870556 0.725164728374922 0.645028261687504 -0.718627279776738 -0.466197409711369 -0.69725755532676 0.58492591167194 0.0533540159787288 -0.4114374908083 -1.16338466989191 1.59330978415529 -0.0428097440461737 -1.79646275672252 1.30214728852434 0.662391162803111 0.226983027134803 -0.161678836299178 1.9045063964581 -1.50396465331344 -0.603765010858105 1.3395443063118 0.384584744953393 -0.416779921920794 -0.750681866451706 1.36759206965240 -0.082877977389883 0.018628213747514 0.292427808262861 1.26475027073687 -1.57341625777587 0.528830384990747
[+] Show/hide bicluster #35 motif PSSM #1.
bicluster 35 motif PSSM #1
Helicobacter pylori 26695
21x4
POSITION A C G T
1 0.071429 0.142857 0 0.785714
2 0.071429 0.714286 0.071429 0.142857
3 0.142857 0.285714 0 0.571429
4 0.071429 0 0 0.928571
5 0 0.142857 0 0.857143
6 0 0 0 1
7 0 0.142857 0.071429 0.785714
8 0.071429 0.5 0.428571 0
9 0.214286 0.142857 0 0.642857
10 0 0 0.214286 0.785714
11 0.714286 0.285714 0 0
12 0.357143 0.071429 0.071429 0.5
13 1 0 0 0
14 0.785714 0 0.142857 0.071429
15 0.071429 0 0 0.928571
16 0.285714 0.071429 0.5 0.142857
17 0 0 0.5 0.5
18 0.071429 0.357143 0.142857 0.428571
19 0 0.357143 0.428571 0.214286
20 0 0.285714 0.071429 0.642857
21 0 0 0.071429 0.928571
[+] Show/hide bicluster #35 motif PSSM #2.
bicluster 35 motif PSSM #2
Helicobacter pylori 26695
21x4
POSITION A C G T
1 0 0 0 1
2 0 1 0 0
3 0.5 0 0.5 0
4 0 1 0 0
5 0 0 0 1
6 0 1 0 0
7 0 0 0 1
8 0 0 0 1
9 0 0 0.5 0.5
10 0.5 0.5 0 0
11 1 0 0 0
12 0 1 0 0
13 0 0.5 0.5 0
14 0 1 0 0
15 0 0 0 1
16 0 0 0.5 0.5
17 1 0 0 0
18 1 0 0 0
19 0.5 0 0.5 0
20 0.5 0 0 0.5
21 0 1 0 0
|