./progs//mast $memeOutFname -d $fname -bfile $bgFname -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

David J Reiss, Institute for Systems Biology
cMonkey integrated biclustering algorithm for learning co-regulated gene modules
RCurl, doMC, foreach, multicore, igraph, RSVGTipsDevice, hwriter, ref, bigmemory, filehash

./progs//meme $fname -bfile $bgFname -psp $pspFname -time 600 -dna -revcomp -maxsize 9999999 -nmotifs %1$d -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text -cons $none

./progs//meme /tmp/Rtmpjw5x2a/meme.tmp_6OHi580Zt51GCp2DYzBr.fst -bfile /tmp/Rtmpjw5x2a/meme.tmp_Sv183EH047KtZnP5bR48.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmpjw5x2a/meme.tmp_7fs9O0GW09u4192oFYJ7.out -d /tmp/Rtmpjw5x2a/mast.tmp_8CHc37F27e6290kg80n5.fst -bfile /tmp/Rtmpjw5x2a/meme.tmp_Sv183EH047KtZnP5bR48.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

./progs//meme $fname -bfile $bgFname -psp $pspFname -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//meme /tmp/Rtmpjw5x2a/meme.tmp_39175gR2k3e45Y0n41Bx.fst -bfile /tmp/Rtmpjw5x2a/meme.tmp_X28zo6g59QuB5Vt17fs4.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmpjw5x2a/meme.tmp_L3gmIbB0Q62f94o87xXG.out -d /tmp/Rtmpjw5x2a/mast.tmp_6Jirx2C4ka66073MZDpy.fst -bfile /tmp/Rtmpjw5x2a/meme.tmp_X28zo6g59QuB5Vt17fs4.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

./progs//meme /tmp/Rtmpjw5x2a/meme.tmp_MuBOI38w2UT85ZE5PAYq.fst -bfile /tmp/Rtmpjw5x2a/meme.tmp_885U0e7JtRq66ra42462.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmpjw5x2a/meme.tmp_L6jd36nJG41Q5THEX24P.out -d /tmp/Rtmpjw5x2a/mast.tmp_6qkx7bXV85r9115Jp5UH.fst -bfile /tmp/Rtmpjw5x2a/meme.tmp_885U0e7JtRq66ra42462.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr