./progs/meme /tmp/Rtmp5GGp3F/meme.tmp_92q423eZfL0nPCtkJ91o.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmp5GGp3F/meme.tmp_60sCR6d4k7Y889T2BN6E.out -d /tmp/Rtmp5GGp3F/mast.tmp_pM28I7kPH54aGF03b46y.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

./progs/meme /tmp/Rtmp5GGp3F/meme.tmp_ZnpT0z00369l7dOjvx5P.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmp5GGp3F/meme.tmp_F4226q55d769W920c7eB.out -d /tmp/Rtmp5GGp3F/mast.tmp_7ct7IMF19A706Dv5GOYs.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

./progs/meme /tmp/Rtmp5GGp3F/meme.tmp_3M55q28U798tZXfFuxH9.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmp5GGp3F/meme.tmp_q0zP46A3QdDWgH8MNl98.out -d /tmp/Rtmp5GGp3F/mast.tmp_577X2f609033nIJu4V8A.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

./progs/meme /tmp/Rtmp5GGp3F/meme.tmp_38eB4YPiHk7Z8C6z3qT9.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg  -time 600 -dna -revcomp -maxsize 9999999 -nmotifs 2 -evt 1e9 -minw 6 -maxw 24 -mod zoops -nostatus -text

./progs//mast /tmp/Rtmp5GGp3F/meme.tmp_Gr84815RT92iK9oL1kV4.out -d /tmp/Rtmp5GGp3F/mast.tmp_768o1Il163W5497HC5s3.fst -bfile /tmp/Rtmp5GGp3F/meme.tmp_6Up30S4LMItZgiPvrCDN.bg -nostatus -stdout -text -brief -ev 99999 -mev 99999 -mt 0.99 -seqp -remcorr

2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase
2-oxoglutarate ferredoxin oxidoreductase subunit alpha
2-oxoglutarate ferredoxin oxidoreductase subunit beta
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
5-nitroimidazole antibiotic resistance protein, putative
50S ribosomal protein L25/general stress protein Ctc
ABC transporter, ATP-binding protein/permease protein
ABC transporter, periplasmic substrate-binding protein
ABC transporter, periplasmic substrate-binding protein, putative
ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
ABC transporter, permease protein, putative
ABC transporter, substrate-binding protein, putative
ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease, ATP-binding subunit ClpA
ATP-dependent Clp protease, ATP-binding subunit ClpB
ATP-dependent Clp protease, proteolytic subunit
ATP-dependent DNA helicase, UvrD/REP family
ATP-dependent RNA helicase, DEAD/DEAH box family
ATP-dependent RNA helicase, DEAD/DEAH family
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein
B12 binding domain protein/radical SAM domain protein
C-5 cytosine-specific DNA methylase family protein
C4-type zinc finger protein, DksA/TraR family
CRISPR-associated helicase Cas3 domain protein
D-isomer specific 2-hydroxyacid dehydrogenase family protein
DNA internalization-related competence protein ComEC/Rec2
DNA mismatch repair protein MutL, putative
DNA polymerase III, delta prime subunit, putative
DNA polymerase III, gamma and tau subunits, putative
DNA-binding protein HU, beta subunit, putative
DNA-binding response regulator, LuxR family
DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase, beta prime subunit
DNA-directed RNA polymerase, omega subunit
GAF domain/sensory box/EAL domain protein
HAD-superfamily hydrolase, subfamily IA, variant 3
HAMP domain/GGDEF domain/EAL domain protein
HAMP domain/sigma-54 interaction domain protein
MiaB-like tRNA modifying enzyme YliG, TIGR01125
MotA/TolQ/ExbB proton channel family protein
RNA methyltransferase, TrmH family, group 3
RNA polymerase sigma factor for flagellar operon FliA
RNA pseudouridine synthase family protein
RND efflux system, outer membrane protein, NodT family
SUF system FeS assembly ATPase SufC, putative
Ser/Thr protein phosphatase family protein
TPR domain protein/response regulator receiver domain protein
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
[NiFe] hydrogenase maturation protein HypF
acetolactate synthase 1 regulatory subunit
acetolactate synthase, large subunit, biosynthetic type
acetyl-CoA carboxylase, biotin carboxylase, putative
acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit
adenine specific DNA methyltransferase, putative
alanyl-tRNA synthetase family protein, putative
aldehyde dehydrogenase (NADP) family protein
amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family
amino acid ABC transporter, ATP-binding protein
amino acid ABC transporter, amino acid-binding protein
amino acid ABC transporter, periplasmic amino acid-binding protein
amino acid ABC transporter, periplasmic-binding protein
amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
anaerobic glycerol-3-phosphate dehydrogenase subunit B
anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative
anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation
anthranilate synthase, glutamine amidotransferase component
arginine N-succinyltransferase, beta subunit, putative
aromatic amino acid decarboxylase, putative
bacterial extracellular solute-binding protein, family 3
bacterial extracellular solute-binding proteins, family 3
bacterial flagellin N-terminal domain protein
bacterial type II/III secretion system protein
bacteriophage DNA transposition B protein
bacteriophage DNA transposition B protein, putative
bacteriophage transposase A protein, putative
basal-body rod modification protein FlgD
bifunctional GMP synthase/glutamine amidotransferase protein
bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
biopolymer transport protein, ExbD/TolR family
branched chain amino acid ABC transporter, ATP-binding protein
branched chain amino acid ABC transporter, permease protein
branched-chain amino acid ABC transporter, ATP binding protein
branched-chain amino acid ABC transporter, ATP-binding protein
branched-chain amino acid ABC transporter, permease protein
capsular polysaccharide transport protein, putative
carbamoyl phosphate synthase small subunit
carbon monoxide dehydrogenase accessory protein CooC, putative
carbon monoxide-induced hydrogenase CooH, putative
cation ABC transporter, ATP-binding protein, putative
cation ABC transporter, periplasmc-binding protein
cation ABC transporter, periplasmic binding protein
cation ABC transporter, permease protein
cation ABC transporter, permease protein, putative
cell cycle protein, FtsW/RodA/SpoVE family
cell division ATP-binding protein FtsE, putative
chromosomal replication initiator protein DnaA
chromosome replication initiation inhibitor protein
cobalamin biosynthesis protein CobD, putative
cobalt ABC transporter, ATP-binding protein, putative
cobalt ABC transporter, permease protein, putative
cobyrinic acid a,c-diamide synthase family protein
competence/damage-inducible protein CinA protein, truncation
conserved domain protein/glycosyl transferase, group 1 family protein
cysteine-rich domain/iron-sulfur cluster-binding domain protein
cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein
cytochrome c nitrite reductase, catalytic subunit NfrA, putative
cytochrome c oxidase, subunit I, putative
cytochrome c oxidase, subunit II, putative
cytochrome c oxidase, subunit III, putative
cytochrome c-type biogenesis protein CcmB
cytochrome c-type biogenesis protein CcmC
cytochrome c-type biogenesis protein CcmE
cytochrome c-type biogenesis protein CcmF
cytochrome d ubiquinol oxidase, subunit I
cytochrome d ubiquinol oxidase, subunit II
dihydroorotate dehydrogenase, electron transfer subunit
dissimilatory sulfite reductase alpha subunit
dissimilatory sulfite reductase beta subunit
dissimilatory sulfite reductase, gamma subunit
efflux transporter, RND family, MFP subunit
electron transport complex protein RnfA, putative
electron transport complex protein RnfC, putative
electron transport complex protein RnfD, putative
electron transport complex protein RnfG, putative
endo/excinuclease amino terminal domain protein
ferrous iron transport protein A, putative
flagellar assembly protein FliH, putative
flagellar basal body-associated protein, putative
flagellar basal-body rod protein, putative
flagellar biosynthesis protein FlhF, putative
flagellar biosynthesis protein, FliO, putative
flagellar hook-associated protein 2, putative
flagellar hook-associated protein FlgK, putative
flagellar hook-associated protein FlgL, putative
flagellar hook-length control domain protein
flagellar protein FliS/hypothetical protein, fusion
flagellar synthesis regulator FleN, putative
formate dehydrogenase accessory protein FdhD, putative
formate dehydrogenase formation protein FdhE, putative
formate dehydrogenase, alpha subunit, selenocysteine-containing
formate dehydrogenase, beta subunit, putative
fumarate reductase, cytochrome b subunit
general secretion pathway protein E, putative
general secretion pathway protein F, putative
glutamate synthase, amidotransferase subunit, putative
glutamate synthase, iron-sulfur cluster-binding subunit, putative
glutamine ABC transporter, ATP-binding protein
glutamine ABC transporter, periplasmic glutamine-binding protein
glutamine ABC transporter, permease protein
glutathione-regulated potassium-efflux system protein KefB, putative
glycerophosphoryl diester phosphodiesterase family protein
glycine/betaine/L-proline ABC transporter, ATP binding protein
glycine/betaine/L-proline ABC transporter, periplasmic-binding protein
glycine/betaine/L-proline ABC transporter, permease protein
glycolate oxidase, iron-sulfur subunit, putative
glycolate oxidase, subunit GlcD, putative
glycosyl transferase, group 1 family protein
glycosyl transferase, group 1/2 family protein
glycosyl transferase, group 2 family protein
hemolysin-type calcium-binding repeat/calx-beta domain protein
heterodisulfide reductase, iron-sulfur-binding subunit, putative
heterodisulfide reductase, transmembrane subunit, putative
high-affinity branched chain amino acid ABC transporter, ATP-binding protein
high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein
high-affinity branched chain amino acid ABC transporter, permease protein
high-affinity branched-chain amino acid ABC ransporter, permease protein
high-affinity branched-chain amino acid ABC transporter ATP-binding protein
high-affinity branched-chain amino acid ABC transporter, ATP binding protein
high-affinity branched-chain amino acid ABC transporter, ATP-binding protein
high-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein
high-affinity branched-chain amino acid ABC transporter, permease protein
host-nuclease inhibitor protein Gam, putative
hydrogenase nickel insertion protein HypA
hydrogenase nickel insertion protein HypA, putative
hydrogenase, CooK subunit, selenocysteine-containing, putative
hydrogenase, b-type cytochrome subunit, putative
hydrogenase, iron-sulfur cluster-binding subunit, putative
imidazole glycerol phosphate synthase subunit HisH
imidazoleglycerol phosphate synthase, cyclase subunit
indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
iron compound ABC transporter, ATP-binding protein
iron compound ABC transporter, periplasmic iron compount-binding protein, putative
iron compound ABC transporter, permease protein
lipoprotein releasing system, ATP-binding protein
lipoprotein releasing system, permease protein
malonyl CoA-acyl carrier protein transacylase
mechanosensitive ion channel family protein
mercuric transport protein periplasmic component
methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein
molybdenum ABC transporter, ATP-binding protein
molybdenum ABC transporter, periplasmic molybdenum-binding protein
molybdenum ABC transporter, permease protein
molybdenum cofactor biosynthesis protein A
molybdenum cofactor biosynthesis protein C
molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family
molybdopterin biosynthesis MoeA protein, putative
molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative
molybdopterin oxidoreductase, molybdopterin-binding subunit, putative
molybdopterin oxidoreductase, transmembrane subunit, putative
molybdopterin-guanine dinucleotide biosynthesis protein A, putative
molybdopterin-guanine dinucleotide biosynthesis protein B, putative
multidrug resistance protein, Smr family
negative regulator of flagellin synthesis FlgM
nitrate reductase, gamma subunit, putative
nitrogenase MoFe cofactor biosynthesis protein NifE domain protein
nitrogenase cofactor biosynthesis protein NifB
nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, putative
nitrogenase molybdenum-iron protein alpha chain
nitrogenase molybdenum-iron protein beta chain
oligopeptide ABC transporter, ATP-binding protein
oligopeptide ABC transporter, permease protein
oligopeptide/dipeptide ABC transporter, ATP-binding protein
oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein
oligopeptide/dipeptide ABC transporter, permease protein
organic solvent tolerance protein, putative
outer membrane autotransporter barrel domain protein
outer membrane lipoprotein carrier protein, putative
outer membrane protein, OMPP1/FadL/TodX family
outer membrane transport protein, OmpP1/FadL/TodX family
oxidoreductase, FAD/iron-sulfur cluster-binding domain protein
oxidoreductase, short chain dehydrogenase/reductase family
oxygen-independent coproporphyrinogen III oxidase, putative
peptide chain release factor 2, programmed frameshift
peptide methionine sulfoxide reductase MsrA
peptidyl-prolyl cis-trans isomerase domain protein
peptidyl-prolyl cis-trans isomerse domain protein
periplasmic [Fe] hydrogenase, large subunit
periplasmic [Fe] hydrogenase, small subunit
periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
periplasmic [NiFeSe] hydrogenase, small subunit
periplasmic [NiFe] hydrogenase, large subunit, isozyme 1
periplasmic [NiFe] hydrogenase, large subunit, isozyme 2
periplasmic [NiFe] hydrogenase, small subunit, isozyme 1
periplasmic [NiFe] hydrogenase, small subunit, isozyme 2
periplasmic divalent cation tolerance protein cutA, putative
phage baseplate assembly protein V, putative
phage tail tape measure protein, TP901 family, putative
phenylacetic acid degradation protein PaaI
phosphate ABC transporter, ATP-binding protein
phosphate ABC transporter, ATP-binding protein, putative
phosphate ABC transporter, periplasmic phosphate-binding protein PstS
phosphate ABC transporter, periplasmic phosphate-binding protein, putative
phosphate ABC transporter, permease protein PstC
phosphate ABC transporter, permease protein, putative
phosphate regulon transcriptional regulator PhoB
phosphonate ABC transporter, ATP-binding protein
phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative
phosphonate ABC transporter, permease protein
plasmid stabilization system family protein
polyamine ABC transporter, periplasmic polyamine-binding protein
polyamine ABC transporter, permease protein
potassium channel histidine kinase domain protein/universal stress protein
prokaryotic dksA/traR C4-type zinc finger family protein
putative ABC transporter ATP-binding protein
putative alpha-isopropylmalate/homocitrate synthase family transferase
putative glutamate synthase subunit beta
putrescine/spermidine ABC transporter ATPase protein
pyridoxal phosphate biosynthetic protein PdxA
pyridoxal phosphate biosynthetic protein PdxJ
pyruvate ferredoxin oxidoreductase, alpha subunit
pyruvate ferredoxin oxidoreductase, beta subunit
pyruvate ferredoxin oxidoreductase, gamma subunit, putative
pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative
pyruvate ferredoxin/flavodoxin oxidoreductase family protein
pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative
pyruvate formate-lyase 1 activating enzyme, putative
pyruvate formate-lyase activating enzyme, putative
pyruvate phosphate dikinase, PEP/pyruvate binding domain protein
quaternary ammonium compound-resistance protein QacC, putative
reductase, iron-sulfur binding subunit, putative
response regulator receiver domain protein
response regulator/sensory box/GGDEF domain/EAL domain protein
response regulator/sensory box/HDIG domain protein
ribosomal RNA large subunit methyltransferase J
ribosomal large subunit pseudouridine synthase B
ribosomal large subunit pseudouridine synthase C
ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase
ribosomal protein L11 methyltransferase, putative
sensory box histidine kinase/response regulator
sensory box/GGDEF domain/EAL domain protein
septum formation initiator family protein
sigma-54 dependent DNA-binding response regulator
sigma-54 dependent transcriptional regulator, putative/response regulator
sigma-54 dependent transcriptional regulator/response regulator
signal recognition particle-docking protein FtsY
siroheme synthase, N-terminal domain protein
site-specific recombinase, phage integrase family
spermidine/putrescine ABC transporter membrane protein
spore coat polysaccharide biosynthesis protein spsF
succinate dehydrogenase and fumarate reductase iron-sulfur protein
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
tartrate dehydratase beta subunit, putative
transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family
transcriptional regulator, rrf2 protein, putative
transglycosylase SLT domain/bacterial extracellular solute-binding domain protein
translation initiation factor, aIF-2BI family, putative
tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein
twin-arginine translocation pathway signal sequence domain protein
twin-arginine translocation protein, TatA/E family
type I phosphodiesterase/nucleotide pyrophosphatase family protein
type I restriction-modification enzyme, R subunit
type I restriction-modification enzyme, S subunit
type I restriction-modification system, M subunit
type I secretion membrane fusion protein, HlyD family
type I secretion outer membrane protein, TolC family
type II DNA modification methyltransferase, putative
type II restriction endonuclease, putative
type III secretion chaperone, CesT family
type III secretion inner membrane protein
type III secretion inner membrane protein, HrcV family
type III secretion protein, hrpY/hrcU family
type III secretion system chaperone, LcrH/SycD family
type III secretion system protein, IpaC family, putative
type III secretion system protein, YopQ family
type III secretion system protein, YscC family
type III secretion system protein, YscF family
type III secretion system target, YopB family
type IV prepilin-like proteins leader peptidase
vitamin B12-dependent methionine synthase family protein
von Willebrand factor type A domain protein

Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough